data_3BHN # _model_server_result.job_id ABdy3FB52PrDu-BqGX-72g _model_server_result.datetime_utc '2024-11-13 11:54:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":220}' # _entry.id 3BHN # _exptl.entry_id 3BHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BHN _cell.length_a 71.32 _cell.length_b 71.32 _cell.length_c 180.63 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_575 x,x-y+2,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -71.32 123.529864 30.105 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 20 A MSE 1 1_555 A N TYR 21 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C LEU 38 A LEU 19 1_555 A N MSE 39 A MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C MSE 39 A MSE 20 1_555 A N ASN 40 A ASN 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C GLY 66 A GLY 47 1_555 A N MSE 67 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale5 A C MSE 67 A MSE 48 1_555 A N THR 68 A THR 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C PHE 102 A PHE 83 1_555 A N MSE 103 A MSE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 103 A MSE 84 1_555 A N SER 104 A SER 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 A C GLY 148 A GLY 129 1_555 A N MSE 149 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C MSE 149 A MSE 130 1_555 A N GLY 150 A GLY 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 A C GLN 202 A GLN 183 1_555 A N MSE 203 A MSE 184 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.338 ? covale ? covale11 A C GLN 202 A GLN 183 1_555 A N MSE 203 A MSE 184 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 203 A MSE 184 1_555 A N GLU 204 A GLU 185 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C MSE 203 A MSE 184 1_555 A N GLU 204 A GLU 185 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3BHN _atom_sites.fract_transf_matrix[1][1] 0.014021 _atom_sites.fract_transf_matrix[1][2] 0.008095 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 218 1 EDO EDO . C 2 EDO A 1 219 2 EDO EDO . D 2 EDO A 1 220 3 EDO EDO . E 3 HOH A 1 221 4 HOH HOH . E 3 HOH A 2 222 5 HOH HOH . E 3 HOH A 3 223 6 HOH HOH . E 3 HOH A 4 224 7 HOH HOH . E 3 HOH A 5 225 8 HOH HOH . E 3 HOH A 6 226 9 HOH HOH . E 3 HOH A 7 227 10 HOH HOH . E 3 HOH A 8 228 11 HOH HOH . E 3 HOH A 9 229 12 HOH HOH . E 3 HOH A 10 230 13 HOH HOH . E 3 HOH A 11 231 14 HOH HOH . E 3 HOH A 12 232 15 HOH HOH . E 3 HOH A 13 233 16 HOH HOH . E 3 HOH A 14 234 17 HOH HOH . E 3 HOH A 15 235 18 HOH HOH . E 3 HOH A 16 236 19 HOH HOH . E 3 HOH A 17 237 20 HOH HOH . E 3 HOH A 18 238 21 HOH HOH . E 3 HOH A 19 239 22 HOH HOH . E 3 HOH A 20 240 23 HOH HOH . E 3 HOH A 21 241 24 HOH HOH . E 3 HOH A 22 242 25 HOH HOH . E 3 HOH A 23 243 26 HOH HOH . E 3 HOH A 24 244 27 HOH HOH . E 3 HOH A 25 245 28 HOH HOH . E 3 HOH A 26 246 29 HOH HOH . E 3 HOH A 27 247 30 HOH HOH . E 3 HOH A 28 248 31 HOH HOH . E 3 HOH A 29 249 32 HOH HOH . E 3 HOH A 30 250 33 HOH HOH . E 3 HOH A 31 251 34 HOH HOH . E 3 HOH A 32 252 35 HOH HOH . E 3 HOH A 33 253 36 HOH HOH . E 3 HOH A 34 254 37 HOH HOH . E 3 HOH A 35 255 38 HOH HOH . E 3 HOH A 36 256 39 HOH HOH . E 3 HOH A 37 257 40 HOH HOH . E 3 HOH A 38 258 41 HOH HOH . E 3 HOH A 39 259 42 HOH HOH . E 3 HOH A 40 260 43 HOH HOH . E 3 HOH A 41 261 44 HOH HOH . E 3 HOH A 42 262 45 HOH HOH . E 3 HOH A 43 263 46 HOH HOH . E 3 HOH A 44 264 47 HOH HOH . E 3 HOH A 45 265 48 HOH HOH . E 3 HOH A 46 266 49 HOH HOH . E 3 HOH A 47 267 50 HOH HOH . E 3 HOH A 48 268 51 HOH HOH . E 3 HOH A 49 269 52 HOH HOH . E 3 HOH A 50 270 53 HOH HOH . E 3 HOH A 51 271 54 HOH HOH . E 3 HOH A 52 272 55 HOH HOH . E 3 HOH A 53 273 56 HOH HOH . E 3 HOH A 54 274 57 HOH HOH . E 3 HOH A 55 275 58 HOH HOH . E 3 HOH A 56 276 59 HOH HOH . E 3 HOH A 57 277 60 HOH HOH . E 3 HOH A 58 278 61 HOH HOH . E 3 HOH A 59 279 62 HOH HOH . E 3 HOH A 60 280 63 HOH HOH . E 3 HOH A 61 281 64 HOH HOH . E 3 HOH A 62 282 65 HOH HOH . E 3 HOH A 63 283 66 HOH HOH . E 3 HOH A 64 284 67 HOH HOH . E 3 HOH A 65 285 68 HOH HOH . E 3 HOH A 66 286 69 HOH HOH . E 3 HOH A 67 287 70 HOH HOH . E 3 HOH A 68 288 71 HOH HOH . E 3 HOH A 69 289 72 HOH HOH . E 3 HOH A 70 290 73 HOH HOH . E 3 HOH A 71 291 74 HOH HOH . E 3 HOH A 72 292 75 HOH HOH . E 3 HOH A 73 293 76 HOH HOH . E 3 HOH A 74 294 77 HOH HOH . E 3 HOH A 75 295 78 HOH HOH . E 3 HOH A 76 296 79 HOH HOH . E 3 HOH A 77 297 80 HOH HOH . E 3 HOH A 78 298 81 HOH HOH . E 3 HOH A 79 299 82 HOH HOH . E 3 HOH A 80 300 83 HOH HOH . E 3 HOH A 81 301 84 HOH HOH . E 3 HOH A 82 302 85 HOH HOH . E 3 HOH A 83 303 86 HOH HOH . E 3 HOH A 84 304 87 HOH HOH . E 3 HOH A 85 305 88 HOH HOH . E 3 HOH A 86 306 89 HOH HOH . E 3 HOH A 87 307 90 HOH HOH . E 3 HOH A 88 308 91 HOH HOH . E 3 HOH A 89 309 92 HOH HOH . E 3 HOH A 90 310 93 HOH HOH . E 3 HOH A 91 311 94 HOH HOH . E 3 HOH A 92 312 95 HOH HOH . E 3 HOH A 93 313 96 HOH HOH . E 3 HOH A 94 314 97 HOH HOH . E 3 HOH A 95 315 98 HOH HOH . E 3 HOH A 96 316 99 HOH HOH . E 3 HOH A 97 317 100 HOH HOH . E 3 HOH A 98 318 101 HOH HOH . E 3 HOH A 99 319 102 HOH HOH . E 3 HOH A 100 320 103 HOH HOH . E 3 HOH A 101 321 104 HOH HOH . E 3 HOH A 102 322 105 HOH HOH . E 3 HOH A 103 323 106 HOH HOH . E 3 HOH A 104 324 107 HOH HOH . E 3 HOH A 105 325 108 HOH HOH . E 3 HOH A 106 326 109 HOH HOH . E 3 HOH A 107 327 110 HOH HOH . E 3 HOH A 108 328 111 HOH HOH . E 3 HOH A 109 329 112 HOH HOH . E 3 HOH A 110 330 113 HOH HOH . E 3 HOH A 111 331 114 HOH HOH . E 3 HOH A 112 332 115 HOH HOH . E 3 HOH A 113 333 116 HOH HOH . E 3 HOH A 114 334 117 HOH HOH . E 3 HOH A 115 335 118 HOH HOH . E 3 HOH A 116 336 119 HOH HOH . E 3 HOH A 117 337 120 HOH HOH . E 3 HOH A 118 338 121 HOH HOH . E 3 HOH A 119 339 122 HOH HOH . E 3 HOH A 120 340 123 HOH HOH . E 3 HOH A 121 341 124 HOH HOH . E 3 HOH A 122 342 125 HOH HOH . E 3 HOH A 123 343 126 HOH HOH . E 3 HOH A 124 344 127 HOH HOH . E 3 HOH A 125 345 128 HOH HOH . E 3 HOH A 126 346 129 HOH HOH . E 3 HOH A 127 347 130 HOH HOH . E 3 HOH A 128 348 131 HOH HOH . E 3 HOH A 129 349 132 HOH HOH . E 3 HOH A 130 350 133 HOH HOH . E 3 HOH A 131 351 134 HOH HOH . E 3 HOH A 132 352 135 HOH HOH . E 3 HOH A 133 353 136 HOH HOH . E 3 HOH A 134 354 137 HOH HOH . E 3 HOH A 135 355 138 HOH HOH . E 3 HOH A 136 356 139 HOH HOH . E 3 HOH A 137 357 140 HOH HOH . E 3 HOH A 138 358 141 HOH HOH . E 3 HOH A 139 359 142 HOH HOH . E 3 HOH A 140 360 143 HOH HOH . E 3 HOH A 141 361 144 HOH HOH . E 3 HOH A 142 362 145 HOH HOH . E 3 HOH A 143 363 146 HOH HOH . E 3 HOH A 144 364 147 HOH HOH . E 3 HOH A 145 365 148 HOH HOH . E 3 HOH A 146 366 149 HOH HOH . E 3 HOH A 147 367 150 HOH HOH . E 3 HOH A 148 368 151 HOH HOH . E 3 HOH A 149 369 152 HOH HOH . E 3 HOH A 150 370 153 HOH HOH . E 3 HOH A 151 371 154 HOH HOH . E 3 HOH A 152 372 155 HOH HOH . E 3 HOH A 153 373 156 HOH HOH . E 3 HOH A 154 374 157 HOH HOH . E 3 HOH A 155 375 158 HOH HOH . E 3 HOH A 156 376 159 HOH HOH . E 3 HOH A 157 377 160 HOH HOH . E 3 HOH A 158 378 161 HOH HOH . E 3 HOH A 159 379 162 HOH HOH . E 3 HOH A 160 380 163 HOH HOH . E 3 HOH A 161 381 164 HOH HOH . E 3 HOH A 162 382 165 HOH HOH . E 3 HOH A 163 383 166 HOH HOH . E 3 HOH A 164 384 167 HOH HOH . E 3 HOH A 165 385 168 HOH HOH . E 3 HOH A 166 386 169 HOH HOH . E 3 HOH A 167 387 170 HOH HOH . E 3 HOH A 168 388 171 HOH HOH . E 3 HOH A 169 389 172 HOH HOH . E 3 HOH A 170 390 173 HOH HOH . E 3 HOH A 171 391 174 HOH HOH . E 3 HOH A 172 392 175 HOH HOH . E 3 HOH A 173 393 176 HOH HOH . E 3 HOH A 174 394 177 HOH HOH . E 3 HOH A 175 395 178 HOH HOH . E 3 HOH A 176 396 179 HOH HOH . E 3 HOH A 177 397 180 HOH HOH . E 3 HOH A 178 398 181 HOH HOH . E 3 HOH A 179 399 182 HOH HOH . E 3 HOH A 180 400 183 HOH HOH . E 3 HOH A 181 401 184 HOH HOH . E 3 HOH A 182 402 185 HOH HOH . E 3 HOH A 183 403 186 HOH HOH . E 3 HOH A 184 404 187 HOH HOH . E 3 HOH A 185 405 188 HOH HOH . E 3 HOH A 186 406 189 HOH HOH . E 3 HOH A 187 407 190 HOH HOH . E 3 HOH A 188 408 191 HOH HOH . E 3 HOH A 189 409 192 HOH HOH . E 3 HOH A 190 410 193 HOH HOH . E 3 HOH A 191 411 194 HOH HOH . E 3 HOH A 192 412 195 HOH HOH . E 3 HOH A 193 413 196 HOH HOH . E 3 HOH A 194 414 197 HOH HOH . E 3 HOH A 195 415 198 HOH HOH . E 3 HOH A 196 416 199 HOH HOH . E 3 HOH A 197 417 200 HOH HOH . E 3 HOH A 198 418 201 HOH HOH . E 3 HOH A 199 419 202 HOH HOH . E 3 HOH A 200 420 203 HOH HOH . E 3 HOH A 201 421 204 HOH HOH . E 3 HOH A 202 422 205 HOH HOH . E 3 HOH A 203 423 206 HOH HOH . E 3 HOH A 204 424 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -12.708 66.437 13.904 0.5 25.26 ? C1 EDO 220 A 1 HETATM 2 O O1 EDO . . . D 2 -12.083 65.826 12.767 0.5 27.74 ? O1 EDO 220 A 1 HETATM 3 C C2 EDO . . . D 2 -11.695 66.369 15.012 0.5 23.52 ? C2 EDO 220 A 1 HETATM 4 O O2 EDO . . . D 2 -11.232 65.015 15.086 0.5 26.75 ? O2 EDO 220 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #