data_3BHO # _model_server_result.job_id WelqCCt7Oma-o6zLv1j4uA _model_server_result.datetime_utc '2024-12-03 16:56:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 3BHO # _exptl.entry_id 3BHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 836.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BHO _cell.length_a 79.955 _cell.length_b 79.955 _cell.length_c 72.186 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 72.186 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 N10 O19 P4' _chem_comp.formula_weight 836.387 _chem_comp.id B4P _chem_comp.mon_nstd_flag . _chem_comp.name "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A B4P doub 70 n n PA O2A B4P sing 71 n n PA O3A B4P sing 72 n n PA O5E B4P sing 73 n n O2A HOA2 B4P sing 74 n n O3A PB B4P sing 75 n n PB O1B B4P doub 76 n n PB O2B B4P sing 77 n n PB O3B B4P sing 78 n n O2B HOB2 B4P sing 79 n n O3B PG B4P sing 80 n n PG O1G B4P doub 81 n n PG O2G B4P sing 82 n n PG O3G B4P sing 83 n n O2G HOG2 B4P sing 84 n n O3G PD B4P sing 85 n n PD O1D B4P doub 86 n n PD O2D B4P sing 87 n n PD O5F B4P sing 88 n n O2D HOD2 B4P sing 89 n n O5E C5E B4P sing 90 n n C5E C4E B4P sing 91 n n C5E H51A B4P sing 92 n n C5E H52A B4P sing 93 n n C4E O4E B4P sing 94 n n C4E C3E B4P sing 95 n n C4E H4E B4P sing 96 n n O4E C1E B4P sing 97 n n C3E O3E B4P sing 98 n n C3E C2E B4P sing 99 n n C3E H3E B4P sing 100 n n O3E HO3A B4P sing 101 n n C2E O2E B4P sing 102 n n C2E C1E B4P sing 103 n n C2E H2E B4P sing 104 n n O2E HO2A B4P sing 105 n n C1E N9A B4P sing 106 n n C1E H1E B4P sing 107 n n N9A C8A B4P sing 108 n y N9A C4A B4P sing 109 n y C8A N7A B4P doub 110 n y C8A H8A B4P sing 111 n n N7A C5A B4P sing 112 n y C5A C6A B4P sing 113 n y C5A C4A B4P doub 114 n y C6A N6A B4P sing 115 n n C6A N1A B4P doub 116 n y N6A H61A B4P sing 117 n n N6A H62A B4P sing 118 n n N1A C2A B4P sing 119 n y C2A N3A B4P doub 120 n y C2A H2A B4P sing 121 n n N3A C4A B4P sing 122 n y O5F C5F B4P sing 123 n n C5F C4F B4P sing 124 n n C5F H51B B4P sing 125 n n C5F H52B B4P sing 126 n n C4F O4F B4P sing 127 n n C4F C3F B4P sing 128 n n C4F H4F B4P sing 129 n n O4F C1F B4P sing 130 n n C3F O3F B4P sing 131 n n C3F C2F B4P sing 132 n n C3F H3F B4P sing 133 n n O3F HO3B B4P sing 134 n n C2F O2F B4P sing 135 n n C2F C1F B4P sing 136 n n C2F H2F B4P sing 137 n n O2F HO2B B4P sing 138 n n C1F N9B B4P sing 139 n n C1F H1F B4P sing 140 n n N9B C8B B4P sing 141 n y N9B C4B B4P sing 142 n y C8B N7B B4P doub 143 n y C8B H8B B4P sing 144 n n N7B C5B B4P sing 145 n y C5B C6B B4P sing 146 n y C5B C4B B4P doub 147 n y C6B N6B B4P sing 148 n n C6B N1B B4P doub 149 n y N6B H61B B4P sing 150 n n N6B H62B B4P sing 151 n n N1B C2B B4P sing 152 n y C2B N3B B4P doub 153 n y C2B H2B B4P sing 154 n n N3B C4B B4P sing 155 n y # _atom_sites.entry_id 3BHO _atom_sites.fract_transf_matrix[1][1] 0.012507 _atom_sites.fract_transf_matrix[1][2] 0.007221 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B4P A 1 800 800 B4P B4P . C 3 HOH A 1 1003 1003 HOH HOH . C 3 HOH A 2 1004 1006 HOH HOH . C 3 HOH A 3 1005 1008 HOH HOH . C 3 HOH A 4 1006 1012 HOH HOH . C 3 HOH A 5 1007 1014 HOH HOH . C 3 HOH A 6 1008 1015 HOH HOH . C 3 HOH A 7 1009 1020 HOH HOH . C 3 HOH A 8 1010 1021 HOH HOH . C 3 HOH A 9 1011 1023 HOH HOH . C 3 HOH A 10 1012 1030 HOH HOH . C 3 HOH A 11 1013 1031 HOH HOH . C 3 HOH A 12 1014 1032 HOH HOH . C 3 HOH A 13 1015 1034 HOH HOH . C 3 HOH A 14 1016 1035 HOH HOH . C 3 HOH A 15 1017 1039 HOH HOH . C 3 HOH A 16 1018 1042 HOH HOH . C 3 HOH A 17 1019 1043 HOH HOH . C 3 HOH A 18 1020 1046 HOH HOH . C 3 HOH A 19 1021 1048 HOH HOH . C 3 HOH A 20 1022 1049 HOH HOH . C 3 HOH A 21 1023 1052 HOH HOH . C 3 HOH A 22 1024 1053 HOH HOH . C 3 HOH A 23 1025 1058 HOH HOH . C 3 HOH A 24 1026 1060 HOH HOH . C 3 HOH A 25 1027 1061 HOH HOH . C 3 HOH A 26 1028 1065 HOH HOH . C 3 HOH A 27 1029 1069 HOH HOH . C 3 HOH A 28 1030 1071 HOH HOH . C 3 HOH A 29 1031 1072 HOH HOH . C 3 HOH A 30 1032 1073 HOH HOH . C 3 HOH A 31 1033 1075 HOH HOH . C 3 HOH A 32 1034 1076 HOH HOH . C 3 HOH A 33 1035 1078 HOH HOH . C 3 HOH A 34 1036 1082 HOH HOH . C 3 HOH A 35 1037 1083 HOH HOH . C 3 HOH A 36 1038 1085 HOH HOH . C 3 HOH A 37 1039 1092 HOH HOH . C 3 HOH A 38 1040 1095 HOH HOH . C 3 HOH A 39 1041 1098 HOH HOH . C 3 HOH A 40 1042 1099 HOH HOH . C 3 HOH A 41 1043 1102 HOH HOH . C 3 HOH A 42 1044 1104 HOH HOH . C 3 HOH A 43 1045 1106 HOH HOH . C 3 HOH A 44 1046 1107 HOH HOH . C 3 HOH A 45 1047 1108 HOH HOH . C 3 HOH A 46 1048 1109 HOH HOH . C 3 HOH A 47 1049 1110 HOH HOH . C 3 HOH A 48 1050 1111 HOH HOH . C 3 HOH A 49 1051 1112 HOH HOH . C 3 HOH A 50 1052 1116 HOH HOH . C 3 HOH A 51 1053 1120 HOH HOH . C 3 HOH A 52 1054 1124 HOH HOH . C 3 HOH A 53 1055 1126 HOH HOH . C 3 HOH A 54 1056 1129 HOH HOH . C 3 HOH A 55 1057 1139 HOH HOH . C 3 HOH A 56 1058 1147 HOH HOH . C 3 HOH A 57 1059 1154 HOH HOH . C 3 HOH A 58 1060 1158 HOH HOH . C 3 HOH A 59 1061 1165 HOH HOH . C 3 HOH A 60 1062 1166 HOH HOH . C 3 HOH A 61 1063 1186 HOH HOH . C 3 HOH A 62 1064 1187 HOH HOH . C 3 HOH A 63 1065 1188 HOH HOH . C 3 HOH A 64 1066 1189 HOH HOH . C 3 HOH A 65 1067 1190 HOH HOH . C 3 HOH A 66 1068 1191 HOH HOH . C 3 HOH A 67 1069 1192 HOH HOH . C 3 HOH A 68 1070 1193 HOH HOH . C 3 HOH A 69 1071 1194 HOH HOH . C 3 HOH A 70 1072 1195 HOH HOH . C 3 HOH A 71 1073 1197 HOH HOH . C 3 HOH A 72 1074 1198 HOH HOH . C 3 HOH A 73 1075 1199 HOH HOH . C 3 HOH A 74 1076 1200 HOH HOH . C 3 HOH A 75 1077 1201 HOH HOH . C 3 HOH A 76 1078 1202 HOH HOH . C 3 HOH A 77 1079 1203 HOH HOH . C 3 HOH A 78 1080 1205 HOH HOH . C 3 HOH A 79 1081 1206 HOH HOH . C 3 HOH A 80 1082 1207 HOH HOH . C 3 HOH A 81 1083 1208 HOH HOH . C 3 HOH A 82 1084 1212 HOH HOH . C 3 HOH A 83 1085 1213 HOH HOH . C 3 HOH A 84 1086 1214 HOH HOH . C 3 HOH A 85 1087 1215 HOH HOH . C 3 HOH A 86 1088 1216 HOH HOH . C 3 HOH A 87 1089 1222 HOH HOH . C 3 HOH A 88 1090 1227 HOH HOH . C 3 HOH A 89 1091 1229 HOH HOH . C 3 HOH A 90 1092 1230 HOH HOH . C 3 HOH A 91 1093 1232 HOH HOH . C 3 HOH A 92 1094 1233 HOH HOH . C 3 HOH A 93 1095 1237 HOH HOH . C 3 HOH A 94 1096 1239 HOH HOH . C 3 HOH A 95 1097 1243 HOH HOH . C 3 HOH A 96 1098 1246 HOH HOH . C 3 HOH A 97 1099 1247 HOH HOH . C 3 HOH A 98 1100 1249 HOH HOH . C 3 HOH A 99 1101 1251 HOH HOH . C 3 HOH A 100 1102 1252 HOH HOH . C 3 HOH A 101 1103 1253 HOH HOH . C 3 HOH A 102 1104 1254 HOH HOH . C 3 HOH A 103 1105 1255 HOH HOH . C 3 HOH A 104 1106 1256 HOH HOH . C 3 HOH A 105 1107 1257 HOH HOH . C 3 HOH A 106 1108 1258 HOH HOH . C 3 HOH A 107 1109 1259 HOH HOH . C 3 HOH A 108 1110 1 HOH HOH . C 3 HOH A 109 1111 10 HOH HOH . C 3 HOH A 110 1112 12 HOH HOH . C 3 HOH A 111 1113 15 HOH HOH . C 3 HOH A 112 1114 17 HOH HOH . C 3 HOH A 113 1115 18 HOH HOH . C 3 HOH A 114 1116 21 HOH HOH . C 3 HOH A 115 1117 22 HOH HOH . C 3 HOH A 116 1118 23 HOH HOH . C 3 HOH A 117 1119 24 HOH HOH . C 3 HOH A 118 1120 25 HOH HOH . C 3 HOH A 119 1121 26 HOH HOH . C 3 HOH A 120 1122 28 HOH HOH . C 3 HOH A 121 1123 30 HOH HOH . C 3 HOH A 122 1124 33 HOH HOH . C 3 HOH A 123 1125 35 HOH HOH . C 3 HOH A 124 1126 37 HOH HOH . C 3 HOH A 125 1127 38 HOH HOH . C 3 HOH A 126 1128 39 HOH HOH . C 3 HOH A 127 1129 41 HOH HOH . C 3 HOH A 128 1130 42 HOH HOH . C 3 HOH A 129 1131 43 HOH HOH . C 3 HOH A 130 1132 44 HOH HOH . C 3 HOH A 131 1133 45 HOH HOH . C 3 HOH A 132 1134 46 HOH HOH . C 3 HOH A 133 1135 47 HOH HOH . C 3 HOH A 134 1136 48 HOH HOH . C 3 HOH A 135 1137 49 HOH HOH . C 3 HOH A 136 1138 50 HOH HOH . C 3 HOH A 137 1139 51 HOH HOH . C 3 HOH A 138 1140 52 HOH HOH . C 3 HOH A 139 1141 53 HOH HOH . C 3 HOH A 140 1142 54 HOH HOH . C 3 HOH A 141 1143 55 HOH HOH . C 3 HOH A 142 1144 56 HOH HOH . C 3 HOH A 143 1145 57 HOH HOH . C 3 HOH A 144 1146 58 HOH HOH . C 3 HOH A 145 1147 59 HOH HOH . C 3 HOH A 146 1148 60 HOH HOH . C 3 HOH A 147 1149 61 HOH HOH . C 3 HOH A 148 1150 62 HOH HOH . C 3 HOH A 149 1151 63 HOH HOH . C 3 HOH A 150 1152 66 HOH HOH . C 3 HOH A 151 1153 68 HOH HOH . C 3 HOH A 152 1154 71 HOH HOH . C 3 HOH A 153 1155 72 HOH HOH . C 3 HOH A 154 1156 73 HOH HOH . C 3 HOH A 155 1157 74 HOH HOH . C 3 HOH A 156 1158 78 HOH HOH . C 3 HOH A 157 1159 81 HOH HOH . C 3 HOH A 158 1160 84 HOH HOH . C 3 HOH A 159 1161 86 HOH HOH . C 3 HOH A 160 1162 88 HOH HOH . C 3 HOH A 161 1163 90 HOH HOH . C 3 HOH A 162 1164 91 HOH HOH . C 3 HOH A 163 1165 92 HOH HOH . C 3 HOH A 164 1166 93 HOH HOH . C 3 HOH A 165 1167 94 HOH HOH . C 3 HOH A 166 1168 95 HOH HOH . C 3 HOH A 167 1169 96 HOH HOH . C 3 HOH A 168 1170 97 HOH HOH . C 3 HOH A 169 1171 98 HOH HOH . C 3 HOH A 170 1172 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3A B4P . . . B 2 4.315 7.267 21.556 0.1 47.4 ? O3A B4P 800 A 1 HETATM 2 P PB B4P . . . B 2 4.3 8.297 20.358 0.4 47.87 ? PB B4P 800 A 1 HETATM 3 O O1B B4P . . . B 2 5.66 8.318 19.762 0.75 46.61 ? O1B B4P 800 A 1 HETATM 4 O O2B B4P . . . B 2 3.13 7.977 19.501 0.2 47.35 ? O2B B4P 800 A 1 HETATM 5 O O3B B4P . . . B 2 4.035 9.7 21.036 0.4 46.93 ? O3B B4P 800 A 1 HETATM 6 P PG B4P . . . B 2 4.611 11.124 20.659 0.6 46.34 ? PG B4P 800 A 1 HETATM 7 O O1G B4P . . . B 2 5.54 10.959 19.512 0.65 46.46 ? O1G B4P 800 A 1 HETATM 8 O O2G B4P . . . B 2 5.098 11.759 21.911 0.6 45.71 ? O2G B4P 800 A 1 HETATM 9 O O3G B4P . . . B 2 3.363 11.949 20.152 0.6 48.21 ? O3G B4P 800 A 1 HETATM 10 P PD B4P . . . B 2 3.209 13.512 19.971 0.4 49.3 ? PD B4P 800 A 1 HETATM 11 O O1D B4P . . . B 2 4.376 14.007 19.198 0.45 49.33 ? O1D B4P 800 A 1 HETATM 12 O O2D B4P . . . B 2 1.834 13.783 19.48 0.3 49.51 ? O2D B4P 800 A 1 HETATM 13 N N9A B4P . . . B 2 -0.255 10.093 19.525 0.1 53.93 ? N9A B4P 800 A 1 HETATM 14 C C8A B4P . . . B 2 0.459 10.438 18.403 0.2 53.95 ? C8A B4P 800 A 1 HETATM 15 N N7A B4P . . . B 2 -0.216 10.31 17.286 0.1 53.94 ? N7A B4P 800 A 1 HETATM 16 C C5A B4P . . . B 2 -1.458 9.85 17.699 0.35 53.72 ? C5A B4P 800 A 1 HETATM 17 C C6A B4P . . . B 2 -2.631 9.518 16.993 0.3 53.64 ? C6A B4P 800 A 1 HETATM 18 N N6A B4P . . . B 2 -2.744 9.602 15.665 0.35 53.61 ? N6A B4P 800 A 1 HETATM 19 N N1A B4P . . . B 2 -3.698 9.092 17.708 0.4 53.44 ? N1A B4P 800 A 1 HETATM 20 C C2A B4P . . . B 2 -3.586 9.008 19.042 0.4 53.66 ? C2A B4P 800 A 1 HETATM 21 N N3A B4P . . . B 2 -2.539 9.291 19.818 0.4 53.6 ? N3A B4P 800 A 1 HETATM 22 C C4A B4P . . . B 2 -1.497 9.711 19.076 0.4 53.77 ? C4A B4P 800 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #