data_3BI2
#
_model_server_result.job_id            MoKZ407n-uVjiDKP2c8M2Q 
_model_server_result.datetime_utc      '2024-12-26 11:29:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bi2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    3BI2 
#
_exptl.entry_id    3BI2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              200.364 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            dodecane-1,12-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BI2 
_cell.length_a            102.205 
_cell.length_b            215.323 
_cell.length_c            116.586 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BI2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 221 A CYS 221 1_555 A SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 B SG CYS 221 B CYS 221 1_555 B SG CYS 238 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
#
_chem_comp.formula           'C12 H28 N2' 
_chem_comp.formula_weight    200.364 
_chem_comp.id                297 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              dodecane-1,12-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 297 sing 1 n n 
C2 C3 297 sing 2 n n 
C3 C4 297 sing 3 n n 
C4 C5 297 sing 4 n n 
C5 C6 297 sing 5 n n 
C6 C7 297 sing 6 n n 
C7 C8 297 sing 7 n n 
C8 C9 297 sing 8 n n 
C9 C10 297 sing 9 n n 
C10 C11 297 sing 10 n n 
C11 C12 297 sing 11 n n 
C12 C13 297 sing 12 n n 
C13 N14 297 sing 13 n n 
N1 HN1 297 sing 14 n n 
N1 HN1A 297 sing 15 n n 
C2 H2 297 sing 16 n n 
C2 H2A 297 sing 17 n n 
C3 H3 297 sing 18 n n 
C3 H3A 297 sing 19 n n 
C4 H4 297 sing 20 n n 
C4 H4A 297 sing 21 n n 
C5 H5 297 sing 22 n n 
C5 H5A 297 sing 23 n n 
C6 H6 297 sing 24 n n 
C6 H6A 297 sing 25 n n 
C7 H7 297 sing 26 n n 
C7 H7A 297 sing 27 n n 
C8 H8 297 sing 28 n n 
C8 H8A 297 sing 29 n n 
C9 H9 297 sing 30 n n 
C9 H9A 297 sing 31 n n 
C10 H10 297 sing 32 n n 
C10 H10A 297 sing 33 n n 
C11 H11 297 sing 34 n n 
C11 H11A 297 sing 35 n n 
C12 H12 297 sing 36 n n 
C12 H12A 297 sing 37 n n 
C13 H13 297 sing 38 n n 
C13 H13A 297 sing 39 n n 
N14 HN14 297 sing 40 n n 
N14 HN1B 297 sing 41 n n 
#
_atom_sites.entry_id                     3BI2 
_atom_sites.fract_transf_matrix[1][1]    0.009784 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004644 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008577 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 801 801 FAD FAD . 
D 3 297 A 1 1001 1001 297 297 . 
E 2 FAD B 1 802 802 FAD FAD . 
F 3 297 B 1 1002 1002 297 297 . 
G 4 HOH A 1 1002 1002 HOH HOH . 
G 4 HOH A 2 1003 1003 HOH HOH . 
G 4 HOH A 3 1004 1004 HOH HOH . 
G 4 HOH A 4 1005 1005 HOH HOH . 
G 4 HOH A 5 1006 1006 HOH HOH . 
G 4 HOH A 6 1007 1007 HOH HOH . 
G 4 HOH A 7 1008 1008 HOH HOH . 
G 4 HOH A 8 1009 1009 HOH HOH . 
G 4 HOH A 9 1010 1010 HOH HOH . 
G 4 HOH A 10 1011 1011 HOH HOH . 
G 4 HOH A 11 1012 1012 HOH HOH . 
G 4 HOH A 12 1013 1013 HOH HOH . 
G 4 HOH A 13 1014 1014 HOH HOH . 
G 4 HOH A 14 1015 1015 HOH HOH . 
G 4 HOH A 15 1016 1016 HOH HOH . 
G 4 HOH A 16 1017 1017 HOH HOH . 
G 4 HOH A 17 1018 1018 HOH HOH . 
G 4 HOH A 18 1019 1019 HOH HOH . 
G 4 HOH A 19 1020 1020 HOH HOH . 
G 4 HOH A 20 1021 1021 HOH HOH . 
G 4 HOH A 21 1022 1022 HOH HOH . 
G 4 HOH A 22 1023 1023 HOH HOH . 
G 4 HOH A 23 1024 1024 HOH HOH . 
G 4 HOH A 24 1025 1025 HOH HOH . 
G 4 HOH A 25 1026 1026 HOH HOH . 
G 4 HOH A 26 1027 1027 HOH HOH . 
G 4 HOH A 27 1028 1028 HOH HOH . 
G 4 HOH A 28 1029 1029 HOH HOH . 
G 4 HOH A 29 1030 1030 HOH HOH . 
G 4 HOH A 30 1031 1031 HOH HOH . 
G 4 HOH A 31 1032 1032 HOH HOH . 
G 4 HOH A 32 1033 1033 HOH HOH . 
G 4 HOH A 33 1034 1034 HOH HOH . 
G 4 HOH A 34 1035 1035 HOH HOH . 
G 4 HOH A 35 1036 1036 HOH HOH . 
G 4 HOH A 36 1037 1037 HOH HOH . 
G 4 HOH A 37 1038 1038 HOH HOH . 
G 4 HOH A 38 1039 1039 HOH HOH . 
G 4 HOH A 39 1040 1040 HOH HOH . 
G 4 HOH A 40 1041 1041 HOH HOH . 
G 4 HOH A 41 1042 1042 HOH HOH . 
G 4 HOH A 42 1043 1043 HOH HOH . 
G 4 HOH A 43 1044 1044 HOH HOH . 
G 4 HOH A 44 1045 1045 HOH HOH . 
G 4 HOH A 45 1046 1046 HOH HOH . 
G 4 HOH A 46 1047 1047 HOH HOH . 
G 4 HOH A 47 1048 1048 HOH HOH . 
G 4 HOH A 48 1049 1049 HOH HOH . 
G 4 HOH A 49 1050 1050 HOH HOH . 
G 4 HOH A 50 1051 1051 HOH HOH . 
G 4 HOH A 51 1052 1052 HOH HOH . 
G 4 HOH A 52 1053 1053 HOH HOH . 
G 4 HOH A 53 1054 1054 HOH HOH . 
G 4 HOH A 54 1055 1055 HOH HOH . 
G 4 HOH A 55 1056 1056 HOH HOH . 
G 4 HOH A 56 1057 1057 HOH HOH . 
G 4 HOH A 57 1058 1058 HOH HOH . 
G 4 HOH A 58 1059 1059 HOH HOH . 
G 4 HOH A 59 1060 1060 HOH HOH . 
G 4 HOH A 60 1061 1061 HOH HOH . 
G 4 HOH A 61 1062 1062 HOH HOH . 
H 4 HOH B 1 1003 1003 HOH HOH . 
H 4 HOH B 2 1004 1004 HOH HOH . 
H 4 HOH B 3 1005 1005 HOH HOH . 
H 4 HOH B 4 1006 1006 HOH HOH . 
H 4 HOH B 5 1007 1007 HOH HOH . 
H 4 HOH B 6 1008 1008 HOH HOH . 
H 4 HOH B 7 1009 1009 HOH HOH . 
H 4 HOH B 8 1010 1010 HOH HOH . 
H 4 HOH B 9 1011 1011 HOH HOH . 
H 4 HOH B 10 1012 1012 HOH HOH . 
H 4 HOH B 11 1013 1013 HOH HOH . 
H 4 HOH B 12 1014 1014 HOH HOH . 
H 4 HOH B 13 1015 1015 HOH HOH . 
H 4 HOH B 14 1016 1016 HOH HOH . 
H 4 HOH B 15 1017 1017 HOH HOH . 
H 4 HOH B 16 1018 1018 HOH HOH . 
H 4 HOH B 17 1019 1019 HOH HOH . 
H 4 HOH B 18 1020 1020 HOH HOH . 
H 4 HOH B 19 1021 1021 HOH HOH . 
H 4 HOH B 20 1022 1022 HOH HOH . 
H 4 HOH B 21 1023 1023 HOH HOH . 
H 4 HOH B 22 1024 1024 HOH HOH . 
H 4 HOH B 23 1025 1025 HOH HOH . 
H 4 HOH B 24 1026 1026 HOH HOH . 
H 4 HOH B 25 1027 1027 HOH HOH . 
H 4 HOH B 26 1028 1028 HOH HOH . 
H 4 HOH B 27 1029 1029 HOH HOH . 
H 4 HOH B 28 1030 1030 HOH HOH . 
H 4 HOH B 29 1031 1031 HOH HOH . 
H 4 HOH B 30 1032 1032 HOH HOH . 
H 4 HOH B 31 1033 1033 HOH HOH . 
H 4 HOH B 32 1034 1034 HOH HOH . 
H 4 HOH B 33 1035 1035 HOH HOH . 
H 4 HOH B 34 1036 1036 HOH HOH . 
H 4 HOH B 35 1037 1037 HOH HOH . 
H 4 HOH B 36 1038 1038 HOH HOH . 
H 4 HOH B 37 1039 1039 HOH HOH . 
H 4 HOH B 38 1040 1040 HOH HOH . 
H 4 HOH B 39 1041 1041 HOH HOH . 
H 4 HOH B 40 1042 1042 HOH HOH . 
H 4 HOH B 41 1043 1043 HOH HOH . 
H 4 HOH B 42 1044 1044 HOH HOH . 
H 4 HOH B 43 1045 1045 HOH HOH . 
H 4 HOH B 44 1046 1046 HOH HOH . 
H 4 HOH B 45 1047 1047 HOH HOH . 
H 4 HOH B 46 1048 1048 HOH HOH . 
H 4 HOH B 47 1049 1049 HOH HOH . 
H 4 HOH B 48 1050 1050 HOH HOH . 
H 4 HOH B 49 1051 1051 HOH HOH . 
H 4 HOH B 50 1052 1052 HOH HOH . 
H 4 HOH B 51 1053 1053 HOH HOH . 
H 4 HOH B 52 1054 1054 HOH HOH . 
H 4 HOH B 53 1055 1055 HOH HOH . 
H 4 HOH B 54 1056 1056 HOH HOH . 
H 4 HOH B 55 1057 1057 HOH HOH . 
H 4 HOH B 56 1058 1058 HOH HOH . 
H 4 HOH B 57 1059 1059 HOH HOH . 
H 4 HOH B 58 1060 1060 HOH HOH . 
H 4 HOH B 59 1061 1061 HOH HOH . 
H 4 HOH B 60 1062 1062 HOH HOH . 
H 4 HOH B 61 1063 1063 HOH HOH . 
H 4 HOH B 62 1064 1064 HOH HOH . 
H 4 HOH B 63 1065 1065 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 297 . . . D 3 73.515 -28.438 56.849 1 66.3 ? N1 297 1001 A 1 
HETATM 2 C C2 297 . . . D 3 72.355 -27.918 57.588 1 68.47 ? C2 297 1001 A 1 
HETATM 3 C C3 297 . . . D 3 72.398 -26.389 57.589 1 68.18 ? C3 297 1001 A 1 
HETATM 4 C C4 297 . . . D 3 72.351 -25.84 56.161 1 68.44 ? C4 297 1001 A 1 
HETATM 5 C C5 297 . . . D 3 71.022 -26.128 55.459 1 67.49 ? C5 297 1001 A 1 
HETATM 6 C C6 297 . . . D 3 69.88 -25.266 56.004 1 67.71 ? C6 297 1001 A 1 
HETATM 7 C C7 297 . . . D 3 69.436 -25.682 57.408 1 65.9 ? C7 297 1001 A 1 
HETATM 8 C C8 297 . . . D 3 68.511 -24.63 58.026 1 65.92 ? C8 297 1001 A 1 
HETATM 9 C C9 297 . . . D 3 67.266 -24.369 57.174 1 66.31 ? C9 297 1001 A 1 
HETATM 10 C C10 297 . . . D 3 66.417 -23.262 57.804 1 65.61 ? C10 297 1001 A 1 
HETATM 11 C C11 297 . . . D 3 65.133 -22.984 57.019 1 65.63 ? C11 297 1001 A 1 
HETATM 12 C C12 297 . . . D 3 65.422 -22.495 55.598 1 65.34 ? C12 297 1001 A 1 
HETATM 13 C C13 297 . . . D 3 64.148 -21.992 54.914 1 65.53 ? C13 297 1001 A 1 
HETATM 14 N N14 297 . . . D 3 63.15 -23.068 54.833 1 65.58 ? N14 297 1001 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#