data_3BI4 # _model_server_result.job_id lQIKcuHUHnx5yc-7NSsPyA _model_server_result.datetime_utc '2024-11-09 23:21:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 3BI4 # _exptl.entry_id 3BI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.301 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(1E,2Z)-but-2-en-1-ylidene]-N'-[(2E)-but-2-en-1-ylidene]butane-1,4-diamine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.37 _cell.angle_gamma 90 _cell.entry_id 3BI4 _cell.length_a 161.589 _cell.length_b 102.852 _cell.length_c 76.647 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 221 A CYS 221 1_555 A SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 B SG CYS 221 B CYS 221 1_555 B SG CYS 238 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C12 H20 N2' _chem_comp.formula_weight 192.301 _chem_comp.id 298 _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(1E,2Z)-but-2-en-1-ylidene]-N'-[(2E)-but-2-en-1-ylidene]butane-1,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 298 sing 1 n n C2 C3 298 doub 2 n n C3 C4 298 sing 3 n n C4 N5 298 doub 4 n n N5 C6 298 sing 5 e n C6 C7 298 sing 6 n n C7 C8 298 sing 7 n n C8 C9 298 sing 8 n n C9 N10 298 sing 9 n n N10 C11 298 doub 10 n n C11 C12 298 sing 11 n n C12 C13 298 doub 12 n n C13 C14 298 sing 13 n n C1 H1 298 sing 14 n n C1 H1A 298 sing 15 n n C1 H1B 298 sing 16 n n C2 H2 298 sing 17 n n C3 H3 298 sing 18 n n C4 H4 298 sing 19 n n C6 H6 298 sing 20 n n C6 H6A 298 sing 21 n n C7 H7 298 sing 22 n n C7 H7A 298 sing 23 n n C8 H8 298 sing 24 n n C8 H8A 298 sing 25 n n C9 H9 298 sing 26 n n C9 H9A 298 sing 27 z n C11 H11 298 sing 28 n n C12 H12 298 sing 29 n n C13 H13 298 sing 30 n n C14 H14 298 sing 31 n n C14 H14A 298 sing 32 n n C14 H14B 298 sing 33 n n # _atom_sites.entry_id 3BI4 _atom_sites.fract_transf_matrix[1][1] 0.006189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000473 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 801 801 FAD FAD . D 3 298 A 1 1001 1001 298 298 . E 2 FAD B 1 802 802 FAD FAD . F 3 298 B 1 1002 1002 298 298 . G 4 HOH A 1 1002 1002 HOH HOH . G 4 HOH A 2 1003 1003 HOH HOH . G 4 HOH A 3 1004 1004 HOH HOH . G 4 HOH A 4 1005 1005 HOH HOH . G 4 HOH A 5 1006 1006 HOH HOH . G 4 HOH A 6 1007 1007 HOH HOH . G 4 HOH A 7 1008 1008 HOH HOH . G 4 HOH A 8 1009 1009 HOH HOH . G 4 HOH A 9 1010 1010 HOH HOH . G 4 HOH A 10 1011 1011 HOH HOH . G 4 HOH A 11 1012 1012 HOH HOH . G 4 HOH A 12 1013 1013 HOH HOH . G 4 HOH A 13 1014 1014 HOH HOH . G 4 HOH A 14 1015 1015 HOH HOH . G 4 HOH A 15 1016 1016 HOH HOH . G 4 HOH A 16 1017 1017 HOH HOH . G 4 HOH A 17 1018 1018 HOH HOH . G 4 HOH A 18 1019 1019 HOH HOH . G 4 HOH A 19 1020 1020 HOH HOH . G 4 HOH A 20 1021 1021 HOH HOH . G 4 HOH A 21 1022 1022 HOH HOH . G 4 HOH A 22 1023 1023 HOH HOH . G 4 HOH A 23 1024 1024 HOH HOH . G 4 HOH A 24 1025 1025 HOH HOH . G 4 HOH A 25 1026 1026 HOH HOH . G 4 HOH A 26 1027 1027 HOH HOH . G 4 HOH A 27 1028 1028 HOH HOH . G 4 HOH A 28 1029 1029 HOH HOH . G 4 HOH A 29 1030 1030 HOH HOH . G 4 HOH A 30 1031 1031 HOH HOH . G 4 HOH A 31 1032 1032 HOH HOH . G 4 HOH A 32 1033 1033 HOH HOH . G 4 HOH A 33 1034 1034 HOH HOH . G 4 HOH A 34 1035 1035 HOH HOH . G 4 HOH A 35 1036 1036 HOH HOH . G 4 HOH A 36 1037 1037 HOH HOH . G 4 HOH A 37 1038 1038 HOH HOH . G 4 HOH A 38 1039 1039 HOH HOH . G 4 HOH A 39 1040 1040 HOH HOH . G 4 HOH A 40 1041 1041 HOH HOH . G 4 HOH A 41 1042 1042 HOH HOH . G 4 HOH A 42 1043 1043 HOH HOH . G 4 HOH A 43 1044 1044 HOH HOH . G 4 HOH A 44 1045 1045 HOH HOH . G 4 HOH A 45 1046 1046 HOH HOH . G 4 HOH A 46 1047 1047 HOH HOH . G 4 HOH A 47 1048 1048 HOH HOH . G 4 HOH A 48 1049 1049 HOH HOH . G 4 HOH A 49 1050 1050 HOH HOH . G 4 HOH A 50 1051 1051 HOH HOH . G 4 HOH A 51 1052 1052 HOH HOH . G 4 HOH A 52 1053 1053 HOH HOH . G 4 HOH A 53 1054 1054 HOH HOH . G 4 HOH A 54 1055 1055 HOH HOH . G 4 HOH A 55 1056 1056 HOH HOH . G 4 HOH A 56 1057 1057 HOH HOH . G 4 HOH A 57 1058 1058 HOH HOH . G 4 HOH A 58 1059 1059 HOH HOH . G 4 HOH A 59 1060 1060 HOH HOH . G 4 HOH A 60 1061 1061 HOH HOH . G 4 HOH A 61 1062 1062 HOH HOH . G 4 HOH A 62 1063 1063 HOH HOH . G 4 HOH A 63 1064 1064 HOH HOH . G 4 HOH A 64 1065 1065 HOH HOH . G 4 HOH A 65 1066 1066 HOH HOH . G 4 HOH A 66 1067 1067 HOH HOH . G 4 HOH A 67 1068 1068 HOH HOH . G 4 HOH A 68 1069 1069 HOH HOH . G 4 HOH A 69 1070 1070 HOH HOH . G 4 HOH A 70 1071 1071 HOH HOH . G 4 HOH A 71 1072 1072 HOH HOH . G 4 HOH A 72 1073 1073 HOH HOH . G 4 HOH A 73 1074 1074 HOH HOH . G 4 HOH A 74 1075 1075 HOH HOH . G 4 HOH A 75 1076 1076 HOH HOH . G 4 HOH A 76 1077 1077 HOH HOH . G 4 HOH A 77 1078 1078 HOH HOH . G 4 HOH A 78 1079 1079 HOH HOH . G 4 HOH A 79 1080 1080 HOH HOH . G 4 HOH A 80 1081 1081 HOH HOH . G 4 HOH A 81 1082 1082 HOH HOH . G 4 HOH A 82 1083 1083 HOH HOH . G 4 HOH A 83 1084 1084 HOH HOH . G 4 HOH A 84 1085 1085 HOH HOH . G 4 HOH A 85 1086 1086 HOH HOH . G 4 HOH A 86 1087 1087 HOH HOH . G 4 HOH A 87 1088 1088 HOH HOH . G 4 HOH A 88 1089 1089 HOH HOH . G 4 HOH A 89 1090 1090 HOH HOH . G 4 HOH A 90 1091 1091 HOH HOH . G 4 HOH A 91 1092 1092 HOH HOH . G 4 HOH A 92 1093 1093 HOH HOH . G 4 HOH A 93 1094 1094 HOH HOH . G 4 HOH A 94 1095 1095 HOH HOH . G 4 HOH A 95 1096 1096 HOH HOH . G 4 HOH A 96 1097 1097 HOH HOH . G 4 HOH A 97 1098 1098 HOH HOH . G 4 HOH A 98 1099 1099 HOH HOH . G 4 HOH A 99 1100 1100 HOH HOH . G 4 HOH A 100 1101 1101 HOH HOH . G 4 HOH A 101 1102 1102 HOH HOH . G 4 HOH A 102 1103 1103 HOH HOH . G 4 HOH A 103 1104 1104 HOH HOH . G 4 HOH A 104 1105 1105 HOH HOH . G 4 HOH A 105 1106 1106 HOH HOH . G 4 HOH A 106 1107 1107 HOH HOH . G 4 HOH A 107 1108 1108 HOH HOH . G 4 HOH A 108 1109 1109 HOH HOH . G 4 HOH A 109 1110 1110 HOH HOH . G 4 HOH A 110 1111 1111 HOH HOH . G 4 HOH A 111 1112 1112 HOH HOH . G 4 HOH A 112 1113 1113 HOH HOH . G 4 HOH A 113 1114 1114 HOH HOH . G 4 HOH A 114 1115 1115 HOH HOH . G 4 HOH A 115 1116 1116 HOH HOH . G 4 HOH A 116 1117 1117 HOH HOH . H 4 HOH B 1 1003 1003 HOH HOH . H 4 HOH B 2 1004 1004 HOH HOH . H 4 HOH B 3 1005 1005 HOH HOH . H 4 HOH B 4 1006 1006 HOH HOH . H 4 HOH B 5 1007 1007 HOH HOH . H 4 HOH B 6 1008 1008 HOH HOH . H 4 HOH B 7 1009 1009 HOH HOH . H 4 HOH B 8 1010 1010 HOH HOH . H 4 HOH B 9 1011 1011 HOH HOH . H 4 HOH B 10 1012 1012 HOH HOH . H 4 HOH B 11 1013 1013 HOH HOH . H 4 HOH B 12 1014 1014 HOH HOH . H 4 HOH B 13 1015 1015 HOH HOH . H 4 HOH B 14 1016 1016 HOH HOH . H 4 HOH B 15 1017 1017 HOH HOH . H 4 HOH B 16 1018 1018 HOH HOH . H 4 HOH B 17 1019 1019 HOH HOH . H 4 HOH B 18 1020 1020 HOH HOH . H 4 HOH B 19 1021 1021 HOH HOH . H 4 HOH B 20 1022 1022 HOH HOH . H 4 HOH B 21 1023 1023 HOH HOH . H 4 HOH B 22 1024 1024 HOH HOH . H 4 HOH B 23 1025 1025 HOH HOH . H 4 HOH B 24 1026 1026 HOH HOH . H 4 HOH B 25 1027 1027 HOH HOH . H 4 HOH B 26 1028 1028 HOH HOH . H 4 HOH B 27 1029 1029 HOH HOH . H 4 HOH B 28 1030 1030 HOH HOH . H 4 HOH B 29 1031 1031 HOH HOH . H 4 HOH B 30 1032 1032 HOH HOH . H 4 HOH B 31 1033 1033 HOH HOH . H 4 HOH B 32 1034 1034 HOH HOH . H 4 HOH B 33 1035 1035 HOH HOH . H 4 HOH B 34 1036 1036 HOH HOH . H 4 HOH B 35 1037 1037 HOH HOH . H 4 HOH B 36 1038 1038 HOH HOH . H 4 HOH B 37 1039 1039 HOH HOH . H 4 HOH B 38 1040 1040 HOH HOH . H 4 HOH B 39 1041 1041 HOH HOH . H 4 HOH B 40 1042 1042 HOH HOH . H 4 HOH B 41 1043 1043 HOH HOH . H 4 HOH B 42 1044 1044 HOH HOH . H 4 HOH B 43 1045 1045 HOH HOH . H 4 HOH B 44 1046 1046 HOH HOH . H 4 HOH B 45 1047 1047 HOH HOH . H 4 HOH B 46 1048 1048 HOH HOH . H 4 HOH B 47 1049 1049 HOH HOH . H 4 HOH B 48 1050 1050 HOH HOH . H 4 HOH B 49 1051 1051 HOH HOH . H 4 HOH B 50 1052 1052 HOH HOH . H 4 HOH B 51 1053 1053 HOH HOH . H 4 HOH B 52 1054 1054 HOH HOH . H 4 HOH B 53 1055 1055 HOH HOH . H 4 HOH B 54 1056 1056 HOH HOH . H 4 HOH B 55 1057 1057 HOH HOH . H 4 HOH B 56 1058 1058 HOH HOH . H 4 HOH B 57 1059 1059 HOH HOH . H 4 HOH B 58 1060 1060 HOH HOH . H 4 HOH B 59 1061 1061 HOH HOH . H 4 HOH B 60 1062 1062 HOH HOH . H 4 HOH B 61 1063 1063 HOH HOH . H 4 HOH B 62 1064 1064 HOH HOH . H 4 HOH B 63 1065 1065 HOH HOH . H 4 HOH B 64 1066 1066 HOH HOH . H 4 HOH B 65 1067 1067 HOH HOH . H 4 HOH B 66 1068 1068 HOH HOH . H 4 HOH B 67 1069 1069 HOH HOH . H 4 HOH B 68 1070 1070 HOH HOH . H 4 HOH B 69 1071 1071 HOH HOH . H 4 HOH B 70 1072 1072 HOH HOH . H 4 HOH B 71 1073 1073 HOH HOH . H 4 HOH B 72 1074 1074 HOH HOH . H 4 HOH B 73 1075 1075 HOH HOH . H 4 HOH B 74 1076 1076 HOH HOH . H 4 HOH B 75 1077 1077 HOH HOH . H 4 HOH B 76 1078 1078 HOH HOH . H 4 HOH B 77 1079 1079 HOH HOH . H 4 HOH B 78 1080 1080 HOH HOH . H 4 HOH B 79 1081 1081 HOH HOH . H 4 HOH B 80 1082 1082 HOH HOH . H 4 HOH B 81 1083 1083 HOH HOH . H 4 HOH B 82 1084 1084 HOH HOH . H 4 HOH B 83 1085 1085 HOH HOH . H 4 HOH B 84 1086 1086 HOH HOH . H 4 HOH B 85 1087 1087 HOH HOH . H 4 HOH B 86 1088 1088 HOH HOH . H 4 HOH B 87 1089 1089 HOH HOH . H 4 HOH B 88 1090 1090 HOH HOH . H 4 HOH B 89 1091 1091 HOH HOH . H 4 HOH B 90 1092 1092 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 298 . . . D 3 18.734 30.842 16.907 1 67.62 ? C1 298 1001 A 1 HETATM 2 C C2 298 . . . D 3 18.91 29.508 16.555 1 68.9 ? C2 298 1001 A 1 HETATM 3 C C3 298 . . . D 3 19.625 28.659 17.392 1 68.05 ? C3 298 1001 A 1 HETATM 4 C C4 298 . . . D 3 19.813 27.323 17.056 1 69.03 ? C4 298 1001 A 1 HETATM 5 N N5 298 . . . D 3 19.315 26.819 15.93 1 68.45 ? N5 298 1001 A 1 HETATM 6 C C6 298 . . . D 3 17.903 26.457 16.119 1 65.95 ? C6 298 1001 A 1 HETATM 7 C C7 298 . . . D 3 17.38 25.74 14.872 1 63.81 ? C7 298 1001 A 1 HETATM 8 C C8 298 . . . D 3 18.193 24.477 14.575 1 62.12 ? C8 298 1001 A 1 HETATM 9 C C9 298 . . . D 3 17.605 23.709 13.39 1 59.55 ? C9 298 1001 A 1 HETATM 10 N N10 298 . . . D 3 18.4 22.503 13.119 1 59.33 ? N10 298 1001 A 1 HETATM 11 C C11 298 . . . D 3 19.386 22.796 12.274 1 59.32 ? C11 298 1001 A 1 HETATM 12 C C12 298 . . . D 3 20.322 21.846 11.884 1 59.92 ? C12 298 1001 A 1 HETATM 13 C C13 298 . . . D 3 20.302 20.532 12.344 1 58.02 ? C13 298 1001 A 1 HETATM 14 C C14 298 . . . D 3 19.331 20.091 13.234 1 59.64 ? C14 298 1001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #