data_3BI5
#
_model_server_result.job_id            KKNWFqlMsWZLvFPbL9KAMQ 
_model_server_result.datetime_utc      '2024-10-19 19:37:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bi5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2841}' 
#
_entry.id    3BI5 
#
_exptl.entry_id    3BI5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.258 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OCTANE 1,8-DIAMINE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.3 
_cell.angle_gamma         90 
_cell.entry_id            3BI5 
_cell.length_a            164.42 
_cell.length_b            103.002 
_cell.length_c            77.242 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BI5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 221 A CYS 221 1_555 A SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf2 B SG CYS 221 B CYS 221 1_555 B SG CYS 238 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
#
_chem_comp.formula           'C8 H20 N2' 
_chem_comp.formula_weight    144.258 
_chem_comp.id                DIA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OCTANE 1,8-DIAMINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,8-DIAMINOOCTANE;OCTAMETHYLENEDIAMINE;1,8-OCTANEDIAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 DIA sing 83 n n 
N1 HN11 DIA sing 84 n n 
N1 HN12 DIA sing 85 n n 
C1 C2 DIA sing 86 n n 
C1 HC11 DIA sing 87 n n 
C1 HC12 DIA sing 88 n n 
C2 C3 DIA sing 89 n n 
C2 HC21 DIA sing 90 n n 
C2 HC22 DIA sing 91 n n 
C3 C4 DIA sing 92 n n 
C3 HC31 DIA sing 93 n n 
C3 HC32 DIA sing 94 n n 
C4 C5 DIA sing 95 n n 
C4 HC41 DIA sing 96 n n 
C4 HC42 DIA sing 97 n n 
C5 C6 DIA sing 98 n n 
C5 HC51 DIA sing 99 n n 
C5 HC52 DIA sing 100 n n 
C6 C7 DIA sing 101 n n 
C6 HC61 DIA sing 102 n n 
C6 HC62 DIA sing 103 n n 
C7 C8 DIA sing 104 n n 
C7 HC71 DIA sing 105 n n 
C7 HC72 DIA sing 106 n n 
C8 N8 DIA sing 107 n n 
C8 HC81 DIA sing 108 n n 
C8 HC82 DIA sing 109 n n 
N8 HN81 DIA sing 110 n n 
N8 HN82 DIA sing 111 n n 
#
_atom_sites.entry_id                     3BI5 
_atom_sites.fract_transf_matrix[1][1]    0.006082 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000457 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012983 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 801 801 FAD FAD . 
D 3 DIA A 1 2841 2841 DIA DIA . 
E 2 FAD B 1 802 802 FAD FAD . 
F 3 DIA B 1 2842 2842 DIA DIA . 
G 4 HOH A 1 2842 2842 HOH HOH . 
G 4 HOH A 2 2843 2843 HOH HOH . 
G 4 HOH A 3 2844 2844 HOH HOH . 
G 4 HOH A 4 2845 2845 HOH HOH . 
G 4 HOH A 5 2846 2846 HOH HOH . 
G 4 HOH A 6 2847 2847 HOH HOH . 
G 4 HOH A 7 2848 2848 HOH HOH . 
G 4 HOH A 8 2849 2849 HOH HOH . 
G 4 HOH A 9 2850 2850 HOH HOH . 
G 4 HOH A 10 2851 2851 HOH HOH . 
G 4 HOH A 11 2852 2852 HOH HOH . 
G 4 HOH A 12 2853 2853 HOH HOH . 
G 4 HOH A 13 2854 2854 HOH HOH . 
G 4 HOH A 14 2855 2855 HOH HOH . 
G 4 HOH A 15 2856 2856 HOH HOH . 
G 4 HOH A 16 2857 2857 HOH HOH . 
G 4 HOH A 17 2858 2858 HOH HOH . 
G 4 HOH A 18 2859 2859 HOH HOH . 
G 4 HOH A 19 2860 2860 HOH HOH . 
G 4 HOH A 20 2861 2861 HOH HOH . 
G 4 HOH A 21 2862 2862 HOH HOH . 
G 4 HOH A 22 2863 2863 HOH HOH . 
G 4 HOH A 23 2864 2864 HOH HOH . 
G 4 HOH A 24 2865 2865 HOH HOH . 
G 4 HOH A 25 2866 2866 HOH HOH . 
G 4 HOH A 26 2867 2867 HOH HOH . 
G 4 HOH A 27 2868 2868 HOH HOH . 
G 4 HOH A 28 2869 2869 HOH HOH . 
G 4 HOH A 29 2870 2870 HOH HOH . 
G 4 HOH A 30 2871 2871 HOH HOH . 
G 4 HOH A 31 2872 2872 HOH HOH . 
G 4 HOH A 32 2873 2873 HOH HOH . 
G 4 HOH A 33 2874 2874 HOH HOH . 
G 4 HOH A 34 2875 2875 HOH HOH . 
G 4 HOH A 35 2876 2876 HOH HOH . 
G 4 HOH A 36 2877 2877 HOH HOH . 
G 4 HOH A 37 2878 2878 HOH HOH . 
G 4 HOH A 38 2879 2879 HOH HOH . 
G 4 HOH A 39 2880 2880 HOH HOH . 
G 4 HOH A 40 2881 2881 HOH HOH . 
G 4 HOH A 41 2882 2882 HOH HOH . 
G 4 HOH A 42 2883 2883 HOH HOH . 
G 4 HOH A 43 2884 2884 HOH HOH . 
G 4 HOH A 44 2885 2885 HOH HOH . 
G 4 HOH A 45 2886 2886 HOH HOH . 
G 4 HOH A 46 2887 2887 HOH HOH . 
G 4 HOH A 47 2888 2888 HOH HOH . 
G 4 HOH A 48 2889 2889 HOH HOH . 
G 4 HOH A 49 2890 2890 HOH HOH . 
G 4 HOH A 50 2891 2891 HOH HOH . 
G 4 HOH A 51 2892 2892 HOH HOH . 
G 4 HOH A 52 2893 2893 HOH HOH . 
G 4 HOH A 53 2894 2894 HOH HOH . 
G 4 HOH A 54 2895 2895 HOH HOH . 
G 4 HOH A 55 2896 2896 HOH HOH . 
G 4 HOH A 56 2897 2897 HOH HOH . 
G 4 HOH A 57 2898 2898 HOH HOH . 
G 4 HOH A 58 2899 2899 HOH HOH . 
G 4 HOH A 59 2900 2900 HOH HOH . 
G 4 HOH A 60 2901 2901 HOH HOH . 
G 4 HOH A 61 2902 2902 HOH HOH . 
G 4 HOH A 62 2903 2903 HOH HOH . 
G 4 HOH A 63 2904 2904 HOH HOH . 
G 4 HOH A 64 2905 2905 HOH HOH . 
G 4 HOH A 65 2906 2906 HOH HOH . 
G 4 HOH A 66 2907 2907 HOH HOH . 
G 4 HOH A 67 2908 2908 HOH HOH . 
G 4 HOH A 68 2909 2909 HOH HOH . 
G 4 HOH A 69 2910 2910 HOH HOH . 
H 4 HOH B 1 2843 2843 HOH HOH . 
H 4 HOH B 2 2844 2844 HOH HOH . 
H 4 HOH B 3 2845 2845 HOH HOH . 
H 4 HOH B 4 2846 2846 HOH HOH . 
H 4 HOH B 5 2847 2847 HOH HOH . 
H 4 HOH B 6 2848 2848 HOH HOH . 
H 4 HOH B 7 2849 2849 HOH HOH . 
H 4 HOH B 8 2850 2850 HOH HOH . 
H 4 HOH B 9 2851 2851 HOH HOH . 
H 4 HOH B 10 2852 2852 HOH HOH . 
H 4 HOH B 11 2853 2853 HOH HOH . 
H 4 HOH B 12 2854 2854 HOH HOH . 
H 4 HOH B 13 2855 2855 HOH HOH . 
H 4 HOH B 14 2856 2856 HOH HOH . 
H 4 HOH B 15 2857 2857 HOH HOH . 
H 4 HOH B 16 2858 2858 HOH HOH . 
H 4 HOH B 17 2859 2859 HOH HOH . 
H 4 HOH B 18 2860 2860 HOH HOH . 
H 4 HOH B 19 2861 2861 HOH HOH . 
H 4 HOH B 20 2862 2862 HOH HOH . 
H 4 HOH B 21 2863 2863 HOH HOH . 
H 4 HOH B 22 2864 2864 HOH HOH . 
H 4 HOH B 23 2865 2865 HOH HOH . 
H 4 HOH B 24 2866 2866 HOH HOH . 
H 4 HOH B 25 2867 2867 HOH HOH . 
H 4 HOH B 26 2868 2868 HOH HOH . 
H 4 HOH B 27 2869 2869 HOH HOH . 
H 4 HOH B 28 2870 2870 HOH HOH . 
H 4 HOH B 29 2871 2871 HOH HOH . 
H 4 HOH B 30 2872 2872 HOH HOH . 
H 4 HOH B 31 2873 2873 HOH HOH . 
H 4 HOH B 32 2874 2874 HOH HOH . 
H 4 HOH B 33 2875 2875 HOH HOH . 
H 4 HOH B 34 2876 2876 HOH HOH . 
H 4 HOH B 35 2877 2877 HOH HOH . 
H 4 HOH B 36 2878 2878 HOH HOH . 
H 4 HOH B 37 2879 2879 HOH HOH . 
H 4 HOH B 38 2880 2880 HOH HOH . 
H 4 HOH B 39 2881 2881 HOH HOH . 
H 4 HOH B 40 2882 2882 HOH HOH . 
H 4 HOH B 41 2883 2883 HOH HOH . 
H 4 HOH B 42 2884 2884 HOH HOH . 
H 4 HOH B 43 2885 2885 HOH HOH . 
H 4 HOH B 44 2886 2886 HOH HOH . 
H 4 HOH B 45 2887 2887 HOH HOH . 
H 4 HOH B 46 2888 2888 HOH HOH . 
H 4 HOH B 47 2889 2889 HOH HOH . 
H 4 HOH B 48 2890 2890 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DIA . . . D 3 14.665 24.244 52.625 1 49.99 ? N1 DIA 2841 A 1 
HETATM 2 C C1 DIA . . . D 3 14.851 22.791 52.596 1 50.6 ? C1 DIA 2841 A 1 
HETATM 3 C C2 DIA . . . D 3 16.191 22.468 51.981 1 54.39 ? C2 DIA 2841 A 1 
HETATM 4 C C3 DIA . . . D 3 16.418 20.955 51.951 1 57.76 ? C3 DIA 2841 A 1 
HETATM 5 C C4 DIA . . . D 3 17.801 20.745 51.357 1 59.71 ? C4 DIA 2841 A 1 
HETATM 6 C C5 DIA . . . D 3 18.208 19.284 51.292 1 60.65 ? C5 DIA 2841 A 1 
HETATM 7 C C6 DIA . . . D 3 19.62 19.297 50.71 1 62.83 ? C6 DIA 2841 A 1 
HETATM 8 C C7 DIA . . . D 3 20.217 17.909 50.59 1 63.93 ? C7 DIA 2841 A 1 
HETATM 9 C C8 DIA . . . D 3 21.624 18.072 50.004 1 65.08 ? C8 DIA 2841 A 1 
HETATM 10 N N8 DIA . . . D 3 22.267 16.765 49.854 1 66.55 ? N8 DIA 2841 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#