data_3BIB
#
_model_server_result.job_id            xUBVhQUHsLeuqkPXnpA7OA 
_model_server_result.datetime_utc      '2024-11-22 00:07:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bib 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":118}' 
#
_entry.id    3BIB 
#
_exptl.entry_id    3BIB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              455.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3BIB 
_cell.length_a            66.26 
_cell.length_b            66.26 
_cell.length_c            139.39 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BIB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 X CYS 18 1_555 A SG CYS 90 X CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 A SG CYS 31 X CYS 31 1_555 A SG CYS 42 X CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 A SG CYS 37 X CYS 37 1_555 A SG CYS 89 X CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc1 A O VAL 94 X VAL 94 1_555 B NA NA . X NA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc2 A O GLY 96 X GLY 96 1_555 B NA NA . X NA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc3 A OD1 ASN 99 X ASN 99 1_555 B NA NA . X NA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc4 A OD1 ASP 100 X ASP 100 1_555 B NA NA . X NA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc5 B NA NA . X NA 117 1_555 C O4 PSF . X PSF 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc6 B NA NA . X NA 117 1_555 D O HOH . X HOH 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? 
#
_chem_comp.formula           'C18 H34 N O10 P' 
_chem_comp.formula_weight    455.437 
_chem_comp.id                PSF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PHOSPHATIDYLSERINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 P PSF sing 277 n n 
O2 C2 PSF sing 278 n n 
O1 P PSF sing 279 n n 
O1 CB PSF sing 280 n n 
P O4 PSF doub 281 n n 
P O3 PSF sing 282 n n 
O3 HO3 PSF sing 283 n n 
C2 C3 PSF sing 284 n n 
C2 H21 PSF sing 285 n n 
C2 H22 PSF sing 286 n n 
C3 O11 PSF sing 287 n n 
C3 C4 PSF sing 288 n n 
C3 H31 PSF sing 289 n n 
O11 C1 PSF sing 290 n n 
O12 C1 PSF doub 291 n n 
C1 C13 PSF sing 292 n n 
C4 O52 PSF sing 293 n n 
C4 H41 PSF sing 294 n n 
C4 H42 PSF sing 295 n n 
C5 O51 PSF doub 296 n n 
C5 O52 PSF sing 297 n n 
C5 C6 PSF sing 298 n n 
C6 C7 PSF sing 299 n n 
C6 H61 PSF sing 300 n n 
C6 H62 PSF sing 301 n n 
C7 C8 PSF sing 302 n n 
C7 H71 PSF sing 303 n n 
C7 H72 PSF sing 304 n n 
C13 C14 PSF sing 305 n n 
C13 H131 PSF sing 306 n n 
C13 H132 PSF sing 307 n n 
C14 C15 PSF sing 308 n n 
C14 H141 PSF sing 309 n n 
C14 H142 PSF sing 310 n n 
C15 C16 PSF sing 311 n n 
C15 H151 PSF sing 312 n n 
C15 H152 PSF sing 313 n n 
N CA PSF sing 314 n n 
N H1 PSF sing 315 n n 
N H2 PSF sing 316 n n 
CA CB PSF sing 317 n n 
CA C PSF sing 318 n n 
CA HA PSF sing 319 n n 
CB HB1 PSF sing 320 n n 
CB HB2 PSF sing 321 n n 
C OT1 PSF doub 322 n n 
C OT2 PSF sing 323 n n 
OT2 HXT PSF sing 324 n n 
C8 C9 PSF sing 325 n n 
C8 H81 PSF sing 326 n n 
C8 H82 PSF sing 327 n n 
C9 C10 PSF sing 328 n n 
C9 H91 PSF sing 329 n n 
C9 H92 PSF sing 330 n n 
C10 H101 PSF sing 331 n n 
C10 H102 PSF sing 332 n n 
C10 H103 PSF sing 333 n n 
C16 C17 PSF sing 334 n n 
C16 H161 PSF sing 335 n n 
C16 H162 PSF sing 336 n n 
C17 H171 PSF sing 337 n n 
C17 H172 PSF sing 338 n n 
C17 H173 PSF sing 339 n n 
#
_atom_sites.entry_id                     3BIB 
_atom_sites.fract_transf_matrix[1][1]    0.015092 
_atom_sites.fract_transf_matrix[1][2]    0.008713 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017427 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007174 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA X 1 117 117 NA NA . 
C 3 PSF X 1 118 118 PSF PSF . 
D 4 HOH X 1 119 119 HOH HOH . 
D 4 HOH X 2 120 120 HOH HOH . 
D 4 HOH X 3 121 121 HOH HOH . 
D 4 HOH X 4 122 122 HOH HOH . 
D 4 HOH X 5 123 123 HOH HOH . 
D 4 HOH X 6 124 124 HOH HOH . 
D 4 HOH X 7 125 125 HOH HOH . 
D 4 HOH X 8 126 126 HOH HOH . 
D 4 HOH X 9 127 127 HOH HOH . 
D 4 HOH X 10 128 128 HOH HOH . 
D 4 HOH X 11 129 129 HOH HOH . 
D 4 HOH X 12 130 130 HOH HOH . 
D 4 HOH X 13 131 131 HOH HOH . 
D 4 HOH X 14 132 132 HOH HOH . 
D 4 HOH X 15 133 133 HOH HOH . 
D 4 HOH X 16 134 134 HOH HOH . 
D 4 HOH X 17 135 135 HOH HOH . 
D 4 HOH X 18 136 136 HOH HOH . 
D 4 HOH X 19 137 137 HOH HOH . 
D 4 HOH X 20 138 138 HOH HOH . 
D 4 HOH X 21 139 139 HOH HOH . 
D 4 HOH X 22 140 140 HOH HOH . 
D 4 HOH X 23 141 141 HOH HOH . 
D 4 HOH X 24 142 142 HOH HOH . 
D 4 HOH X 25 143 143 HOH HOH . 
D 4 HOH X 26 144 144 HOH HOH . 
D 4 HOH X 27 145 145 HOH HOH . 
D 4 HOH X 28 146 146 HOH HOH . 
D 4 HOH X 29 147 147 HOH HOH . 
D 4 HOH X 30 148 148 HOH HOH . 
D 4 HOH X 31 149 149 HOH HOH . 
D 4 HOH X 32 150 150 HOH HOH . 
D 4 HOH X 33 151 151 HOH HOH . 
D 4 HOH X 34 152 152 HOH HOH . 
D 4 HOH X 35 153 153 HOH HOH . 
D 4 HOH X 36 154 154 HOH HOH . 
D 4 HOH X 37 155 155 HOH HOH . 
D 4 HOH X 38 156 156 HOH HOH . 
D 4 HOH X 39 157 157 HOH HOH . 
D 4 HOH X 40 158 158 HOH HOH . 
D 4 HOH X 41 159 159 HOH HOH . 
D 4 HOH X 42 160 160 HOH HOH . 
D 4 HOH X 43 161 161 HOH HOH . 
D 4 HOH X 44 162 162 HOH HOH . 
D 4 HOH X 45 163 163 HOH HOH . 
D 4 HOH X 46 164 164 HOH HOH . 
D 4 HOH X 47 165 165 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 PSF . . . C 3 5.467 -33.038 27.617 1 42.94 ? O2 PSF 118 X 1 
HETATM 2 O O1 PSF . . . C 3 6.794 -33.301 25.49 1 40.83 ? O1 PSF 118 X 1 
HETATM 3 P P PSF . . . C 3 6.78 -32.477 26.874 1 41.24 ? P PSF 118 X 1 
HETATM 4 O O4 PSF . . . C 3 7.991 -32.887 27.671 1 41.75 ? O4 PSF 118 X 1 
HETATM 5 O O3 PSF . . . C 3 6.566 -31.021 26.562 1 39.95 ? O3 PSF 118 X 1 
HETATM 6 C C2 PSF . . . C 3 4.239 -33.097 26.904 1 44.61 ? C2 PSF 118 X 1 
HETATM 7 C C3 PSF . . . C 3 3.04 -33.068 27.837 1 46.98 ? C3 PSF 118 X 1 
HETATM 8 O O11 PSF . . . C 3 3.024 -34.204 28.7 1 47.89 ? O11 PSF 118 X 1 
HETATM 9 O O12 PSF . . . C 3 1.144 -35.015 27.561 1 49.8 ? O12 PSF 118 X 1 
HETATM 10 C C1 PSF . . . C 3 1.757 -34.937 28.621 1 46.61 ? C1 PSF 118 X 1 
HETATM 11 C C4 PSF . . . C 3 3.026 -31.806 28.671 1 48.44 ? C4 PSF 118 X 1 
HETATM 12 C C5 PSF . . . C 3 1.326 -30.736 30.123 1 56.96 ? C5 PSF 118 X 1 
HETATM 13 O O51 PSF . . . C 3 0.859 -29.889 29.376 1 50.81 ? O51 PSF 118 X 1 
HETATM 14 O O52 PSF . . . C 3 1.896 -31.923 29.52 1 48.2 ? O52 PSF 118 X 1 
HETATM 15 C C6 PSF . . . C 3 1.313 -30.57 31.63 1 50.32 ? C6 PSF 118 X 1 
HETATM 16 C C13 PSF . . . C 3 1.196 -35.618 29.847 1 50.92 ? C13 PSF 118 X 1 
HETATM 17 C C14 PSF . . . C 3 0.17 -34.728 30.538 1 47.93 ? C14 PSF 118 X 1 
HETATM 18 C C15 PSF . . . C 3 -1.029 -35.546 31.017 1 50.77 ? C15 PSF 118 X 1 
HETATM 19 N N PSF . . . C 3 7.912 -34.629 23.186 1 40.08 ? N PSF 118 X 1 
HETATM 20 C CA PSF . . . C 3 6.867 -35.214 24.004 1 40.14 ? CA PSF 118 X 1 
HETATM 21 C CB PSF . . . C 3 7.03 -34.714 25.437 1 40.26 ? CB PSF 118 X 1 
HETATM 22 C C PSF . . . C 3 5.522 -34.805 23.47 1 40.18 ? C PSF 118 X 1 
HETATM 23 O OT1 PSF . . . C 3 5.473 -34.082 22.452 1 40.39 ? OT1 PSF 118 X 1 
HETATM 24 O OT2 PSF . . . C 3 4.489 -35.182 24.062 1 40.09 ? OT2 PSF 118 X 1 
HETATM 25 C C16 PSF . . . C 3 -0.986 -35.773 32.525 1 54.61 ? C16 PSF 118 X 1 
HETATM 26 C C17 PSF . . . C 3 -2.074 -34.992 33.228 1 45.77 ? C17 PSF 118 X 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#