data_3BIF # _model_server_result.job_id 1vSG6Rqqgjg0PQxzZMc6jQ _model_server_result.datetime_utc '2024-11-26 07:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":525}' # _entry.id 3BIF # _exptl.entry_id 3BIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 129.5 _cell.angle_gamma 90 _cell.entry_id 3BIF _cell.length_a 106.7 _cell.length_b 108.7 _cell.length_c 71.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -91.213617 0 110.650965 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3BIF _atom_sites.fract_transf_matrix[1][1] 0.009372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007726 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018075 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 510 510 BOG BOG . C 2 BOG A 1 525 525 BOG BOG . D 3 PO4 A 1 515 515 PO4 PO4 . E 3 PO4 A 1 520 520 PO4 PO4 . F 4 SIN A 1 505 505 SIN SUX . G 5 HOH A 1 601 601 HOH HOH . G 5 HOH A 2 602 602 HOH HOH . G 5 HOH A 3 603 603 HOH HOH . G 5 HOH A 4 604 604 HOH HOH . G 5 HOH A 5 605 605 HOH HOH . G 5 HOH A 6 606 606 HOH HOH . G 5 HOH A 7 607 607 HOH HOH . G 5 HOH A 8 608 608 HOH HOH . G 5 HOH A 9 609 609 HOH HOH . G 5 HOH A 10 610 610 HOH HOH . G 5 HOH A 11 611 611 HOH HOH . G 5 HOH A 12 612 612 HOH HOH . G 5 HOH A 13 613 613 HOH HOH . G 5 HOH A 14 614 614 HOH HOH . G 5 HOH A 15 615 615 HOH HOH . G 5 HOH A 16 616 616 HOH HOH . G 5 HOH A 17 617 617 HOH HOH . G 5 HOH A 18 618 618 HOH HOH . G 5 HOH A 19 619 619 HOH HOH . G 5 HOH A 20 620 620 HOH HOH . G 5 HOH A 21 621 621 HOH HOH . G 5 HOH A 22 622 622 HOH HOH . G 5 HOH A 23 623 623 HOH HOH . G 5 HOH A 24 624 624 HOH HOH . G 5 HOH A 25 625 625 HOH HOH . G 5 HOH A 26 626 626 HOH HOH . G 5 HOH A 27 627 627 HOH HOH . G 5 HOH A 28 628 628 HOH HOH . G 5 HOH A 29 629 629 HOH HOH . G 5 HOH A 30 630 630 HOH HOH . G 5 HOH A 31 631 631 HOH HOH . G 5 HOH A 32 632 632 HOH HOH . G 5 HOH A 33 633 633 HOH HOH . G 5 HOH A 34 634 634 HOH HOH . G 5 HOH A 35 635 635 HOH HOH . G 5 HOH A 36 636 636 HOH HOH . G 5 HOH A 37 637 637 HOH HOH . G 5 HOH A 38 638 638 HOH HOH . G 5 HOH A 39 639 639 HOH HOH . G 5 HOH A 40 640 640 HOH HOH . G 5 HOH A 41 641 641 HOH HOH . G 5 HOH A 42 642 642 HOH HOH . G 5 HOH A 43 643 643 HOH HOH . G 5 HOH A 44 644 644 HOH HOH . G 5 HOH A 45 645 645 HOH HOH . G 5 HOH A 46 646 646 HOH HOH . G 5 HOH A 47 647 647 HOH HOH . G 5 HOH A 48 648 648 HOH HOH . G 5 HOH A 49 649 649 HOH HOH . G 5 HOH A 50 650 650 HOH HOH . G 5 HOH A 51 651 651 HOH HOH . G 5 HOH A 52 652 652 HOH HOH . G 5 HOH A 53 653 653 HOH HOH . G 5 HOH A 54 654 654 HOH HOH . G 5 HOH A 55 655 655 HOH HOH . G 5 HOH A 56 656 656 HOH HOH . G 5 HOH A 57 657 657 HOH HOH . G 5 HOH A 58 658 658 HOH HOH . G 5 HOH A 59 659 659 HOH HOH . G 5 HOH A 60 660 660 HOH HOH . G 5 HOH A 61 661 661 HOH HOH . G 5 HOH A 62 662 662 HOH HOH . G 5 HOH A 63 663 663 HOH HOH . G 5 HOH A 64 664 664 HOH HOH . G 5 HOH A 65 665 665 HOH HOH . G 5 HOH A 66 666 666 HOH HOH . G 5 HOH A 67 667 667 HOH HOH . G 5 HOH A 68 668 668 HOH HOH . G 5 HOH A 69 669 669 HOH HOH . G 5 HOH A 70 670 670 HOH HOH . G 5 HOH A 71 671 671 HOH HOH . G 5 HOH A 72 672 672 HOH HOH . G 5 HOH A 73 673 673 HOH HOH . G 5 HOH A 74 674 674 HOH HOH . G 5 HOH A 75 675 675 HOH HOH . G 5 HOH A 76 676 676 HOH HOH . G 5 HOH A 77 677 677 HOH HOH . G 5 HOH A 78 678 678 HOH HOH . G 5 HOH A 79 679 679 HOH HOH . G 5 HOH A 80 680 680 HOH HOH . G 5 HOH A 81 681 681 HOH HOH . G 5 HOH A 82 682 682 HOH HOH . G 5 HOH A 83 683 683 HOH HOH . G 5 HOH A 84 684 684 HOH HOH . G 5 HOH A 85 685 685 HOH HOH . G 5 HOH A 86 686 686 HOH HOH . G 5 HOH A 87 687 687 HOH HOH . G 5 HOH A 88 688 688 HOH HOH . G 5 HOH A 89 689 689 HOH HOH . G 5 HOH A 90 690 690 HOH HOH . G 5 HOH A 91 691 691 HOH HOH . G 5 HOH A 92 692 692 HOH HOH . G 5 HOH A 93 693 693 HOH HOH . G 5 HOH A 94 694 694 HOH HOH . G 5 HOH A 95 695 695 HOH HOH . G 5 HOH A 96 696 696 HOH HOH . G 5 HOH A 97 697 697 HOH HOH . G 5 HOH A 98 698 698 HOH HOH . G 5 HOH A 99 699 699 HOH HOH . G 5 HOH A 100 700 700 HOH HOH . G 5 HOH A 101 701 701 HOH HOH . G 5 HOH A 102 702 702 HOH HOH . G 5 HOH A 103 703 703 HOH HOH . G 5 HOH A 104 704 704 HOH HOH . G 5 HOH A 105 705 705 HOH HOH . G 5 HOH A 106 706 706 HOH HOH . G 5 HOH A 107 707 707 HOH HOH . G 5 HOH A 108 708 708 HOH HOH . G 5 HOH A 109 709 709 HOH HOH . G 5 HOH A 110 710 710 HOH HOH . G 5 HOH A 111 711 711 HOH HOH . G 5 HOH A 112 712 712 HOH HOH . G 5 HOH A 113 713 713 HOH HOH . G 5 HOH A 114 714 714 HOH HOH . G 5 HOH A 115 715 715 HOH HOH . G 5 HOH A 116 716 716 HOH HOH . G 5 HOH A 117 717 717 HOH HOH . G 5 HOH A 118 718 718 HOH HOH . G 5 HOH A 119 719 719 HOH HOH . G 5 HOH A 120 720 720 HOH HOH . G 5 HOH A 121 721 721 HOH HOH . G 5 HOH A 122 722 722 HOH HOH . G 5 HOH A 123 723 723 HOH HOH . G 5 HOH A 124 724 724 HOH HOH . G 5 HOH A 125 725 725 HOH HOH . G 5 HOH A 126 726 726 HOH HOH . G 5 HOH A 127 727 727 HOH HOH . G 5 HOH A 128 728 728 HOH HOH . G 5 HOH A 129 729 729 HOH HOH . G 5 HOH A 130 730 730 HOH HOH . G 5 HOH A 131 731 731 HOH HOH . G 5 HOH A 132 732 732 HOH HOH . G 5 HOH A 133 733 733 HOH HOH . G 5 HOH A 134 734 734 HOH HOH . G 5 HOH A 135 735 735 HOH HOH . G 5 HOH A 136 736 736 HOH HOH . G 5 HOH A 137 737 737 HOH HOH . G 5 HOH A 138 738 738 HOH HOH . G 5 HOH A 139 739 739 HOH HOH . G 5 HOH A 140 740 740 HOH HOH . G 5 HOH A 141 741 741 HOH HOH . G 5 HOH A 142 742 742 HOH HOH . G 5 HOH A 143 743 743 HOH HOH . G 5 HOH A 144 744 744 HOH HOH . G 5 HOH A 145 745 745 HOH HOH . G 5 HOH A 146 746 746 HOH HOH . G 5 HOH A 147 747 747 HOH HOH . G 5 HOH A 148 748 748 HOH HOH . G 5 HOH A 149 749 749 HOH HOH . G 5 HOH A 150 750 750 HOH HOH . G 5 HOH A 151 751 751 HOH HOH . G 5 HOH A 152 752 752 HOH HOH . G 5 HOH A 153 753 753 HOH HOH . G 5 HOH A 154 754 754 HOH HOH . G 5 HOH A 155 755 755 HOH HOH . G 5 HOH A 156 756 756 HOH HOH . G 5 HOH A 157 757 757 HOH HOH . G 5 HOH A 158 758 758 HOH HOH . G 5 HOH A 159 759 759 HOH HOH . G 5 HOH A 160 760 760 HOH HOH . G 5 HOH A 161 761 761 HOH HOH . G 5 HOH A 162 762 762 HOH HOH . G 5 HOH A 163 763 763 HOH HOH . G 5 HOH A 164 764 764 HOH HOH . G 5 HOH A 165 765 765 HOH HOH . G 5 HOH A 166 766 766 HOH HOH . G 5 HOH A 167 767 767 HOH HOH . G 5 HOH A 168 768 768 HOH HOH . G 5 HOH A 169 769 769 HOH HOH . G 5 HOH A 170 770 770 HOH HOH . G 5 HOH A 171 771 771 HOH HOH . G 5 HOH A 172 772 772 HOH HOH . G 5 HOH A 173 773 773 HOH HOH . G 5 HOH A 174 774 774 HOH HOH . G 5 HOH A 175 775 775 HOH HOH . G 5 HOH A 176 776 776 HOH HOH . G 5 HOH A 177 777 777 HOH HOH . G 5 HOH A 178 778 778 HOH HOH . G 5 HOH A 179 779 779 HOH HOH . G 5 HOH A 180 780 780 HOH HOH . G 5 HOH A 181 781 781 HOH HOH . G 5 HOH A 182 782 782 HOH HOH . G 5 HOH A 183 783 783 HOH HOH . G 5 HOH A 184 784 784 HOH HOH . G 5 HOH A 185 785 785 HOH HOH . G 5 HOH A 186 786 786 HOH HOH . G 5 HOH A 187 787 787 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 2 -18.391 -57.948 90.549 1 96.59 ? C1 BOG 525 A 1 HETATM 2 O O1 BOG . . . C 2 -19.675 -57.7 89.936 1 90.17 ? O1 BOG 525 A 1 HETATM 3 C C2 BOG . . . C 2 -18.572 -58.781 91.834 1 100 ? C2 BOG 525 A 1 HETATM 4 O O2 BOG . . . C 2 -19.304 -58.033 92.816 1 100 ? O2 BOG 525 A 1 HETATM 5 C C3 BOG . . . C 2 -17.207 -59.137 92.403 1 100 ? C3 BOG 525 A 1 HETATM 6 O O3 BOG . . . C 2 -17.386 -59.979 93.552 1 100 ? O3 BOG 525 A 1 HETATM 7 C C4 BOG . . . C 2 -16.393 -59.883 91.343 1 100 ? C4 BOG 525 A 1 HETATM 8 O O4 BOG . . . C 2 -15.092 -60.145 91.865 1 100 ? O4 BOG 525 A 1 HETATM 9 C C5 BOG . . . C 2 -16.276 -59.03 90.065 1 99.16 ? C5 BOG 525 A 1 HETATM 10 O O5 BOG . . . C 2 -17.575 -58.664 89.608 1 98.09 ? O5 BOG 525 A 1 HETATM 11 C C6 BOG . . . C 2 -15.605 -59.819 88.93 1 99.89 ? C6 BOG 525 A 1 HETATM 12 O O6 BOG . . . C 2 -14.752 -60.848 89.435 1 100 ? O6 BOG 525 A 1 HETATM 13 C C1' BOG . . . C 2 -20.37 -58.888 89.523 1 72.16 ? C1' BOG 525 A 1 HETATM 14 C C2' BOG . . . C 2 -21.184 -58.606 88.267 1 57.48 ? C2' BOG 525 A 1 HETATM 15 C C3' BOG . . . C 2 -22.597 -58.231 88.665 1 51.31 ? C3' BOG 525 A 1 HETATM 16 C C4' BOG . . . C 2 -23.482 -58.229 87.431 1 46.3 ? C4' BOG 525 A 1 HETATM 17 C C5' BOG . . . C 2 -24.866 -57.719 87.806 1 41.35 ? C5' BOG 525 A 1 HETATM 18 C C6' BOG . . . C 2 -25.879 -58.218 86.788 1 40.81 ? C6' BOG 525 A 1 HETATM 19 C C7' BOG . . . C 2 -27.237 -57.621 87.097 1 43.32 ? C7' BOG 525 A 1 HETATM 20 C C8' BOG . . . C 2 -27.993 -57.404 85.798 1 55.64 ? C8' BOG 525 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #