data_3BIK # _model_server_result.job_id 9aEsTNLBIffBL32Eh5Mc0g _model_server_result.datetime_utc '2024-10-13 11:17:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3BIK # _exptl.entry_id 3BIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BIK _cell.length_a 56.46 _cell.length_b 63.94 _cell.length_c 159.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 40 1_555 A SG CYS 97 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 138 A CYS 155 1_555 A SG CYS 192 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 B SG CYS 31 B CYS 54 1_555 B SG CYS 100 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf4 C SG CYS 31 C CYS 54 1_555 C SG CYS 100 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3BIK _atom_sites.fract_transf_matrix[1][1] 0.01771 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL C 1 301 301 GOL GOL . E 4 HOH A 1 240 1 HOH HOH . E 4 HOH A 2 241 2 HOH HOH . E 4 HOH A 3 242 4 HOH HOH . E 4 HOH A 4 243 10 HOH HOH . E 4 HOH A 5 244 12 HOH HOH . E 4 HOH A 6 245 13 HOH HOH . E 4 HOH A 7 246 16 HOH HOH . E 4 HOH A 8 247 19 HOH HOH . E 4 HOH A 9 248 20 HOH HOH . E 4 HOH A 10 249 22 HOH HOH . E 4 HOH A 11 250 23 HOH HOH . E 4 HOH A 12 251 24 HOH HOH . E 4 HOH A 13 252 30 HOH HOH . E 4 HOH A 14 253 34 HOH HOH . E 4 HOH A 15 254 35 HOH HOH . E 4 HOH A 16 255 36 HOH HOH . E 4 HOH A 17 256 40 HOH HOH . E 4 HOH A 18 257 41 HOH HOH . E 4 HOH A 19 258 42 HOH HOH . E 4 HOH A 20 259 43 HOH HOH . E 4 HOH A 21 260 47 HOH HOH . E 4 HOH A 22 261 55 HOH HOH . E 4 HOH A 23 262 58 HOH HOH . E 4 HOH A 24 263 66 HOH HOH . E 4 HOH A 25 264 67 HOH HOH . E 4 HOH A 26 265 68 HOH HOH . E 4 HOH A 27 266 69 HOH HOH . E 4 HOH A 28 267 70 HOH HOH . E 4 HOH A 29 268 74 HOH HOH . E 4 HOH A 30 269 78 HOH HOH . E 4 HOH A 31 270 79 HOH HOH . F 4 HOH B 1 158 3 HOH HOH . F 4 HOH B 2 159 5 HOH HOH . F 4 HOH B 3 160 8 HOH HOH . F 4 HOH B 4 161 11 HOH HOH . F 4 HOH B 5 162 28 HOH HOH . F 4 HOH B 6 163 44 HOH HOH . F 4 HOH B 7 164 45 HOH HOH . F 4 HOH B 8 165 46 HOH HOH . F 4 HOH B 9 166 48 HOH HOH . F 4 HOH B 10 167 49 HOH HOH . F 4 HOH B 11 168 56 HOH HOH . F 4 HOH B 12 169 59 HOH HOH . F 4 HOH B 13 170 60 HOH HOH . F 4 HOH B 14 171 61 HOH HOH . F 4 HOH B 15 172 62 HOH HOH . F 4 HOH B 16 173 63 HOH HOH . F 4 HOH B 17 174 64 HOH HOH . F 4 HOH B 18 175 65 HOH HOH . F 4 HOH B 19 176 71 HOH HOH . F 4 HOH B 20 177 72 HOH HOH . F 4 HOH B 21 178 73 HOH HOH . G 4 HOH C 1 302 6 HOH HOH . G 4 HOH C 2 303 9 HOH HOH . G 4 HOH C 3 304 14 HOH HOH . G 4 HOH C 4 305 15 HOH HOH . G 4 HOH C 5 306 17 HOH HOH . G 4 HOH C 6 307 18 HOH HOH . G 4 HOH C 7 308 21 HOH HOH . G 4 HOH C 8 309 26 HOH HOH . G 4 HOH C 9 310 27 HOH HOH . G 4 HOH C 10 311 29 HOH HOH . G 4 HOH C 11 312 31 HOH HOH . G 4 HOH C 12 313 32 HOH HOH . G 4 HOH C 13 314 33 HOH HOH . G 4 HOH C 14 315 37 HOH HOH . G 4 HOH C 15 316 38 HOH HOH . G 4 HOH C 16 317 39 HOH HOH . G 4 HOH C 17 318 50 HOH HOH . G 4 HOH C 18 319 51 HOH HOH . G 4 HOH C 19 320 52 HOH HOH . G 4 HOH C 20 321 53 HOH HOH . G 4 HOH C 21 322 54 HOH HOH . G 4 HOH C 22 323 57 HOH HOH . G 4 HOH C 23 324 75 HOH HOH . G 4 HOH C 24 325 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -15.126 -34.463 -0.019 1 68.63 ? C1 GOL 301 C 1 HETATM 2 O O1 GOL . . . D 3 -14.027 -33.581 0.102 1 66.38 ? O1 GOL 301 C 1 HETATM 3 C C2 GOL . . . D 3 -15.242 -35.408 1.185 1 68.02 ? C2 GOL 301 C 1 HETATM 4 O O2 GOL . . . D 3 -15.409 -34.681 2.385 1 66.2 ? O2 GOL 301 C 1 HETATM 5 C C3 GOL . . . D 3 -16.424 -36.356 0.97 1 67.56 ? C3 GOL 301 C 1 HETATM 6 O O3 GOL . . . D 3 -16.551 -37.405 0.544 1 63.31 ? O3 GOL 301 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #