data_3BIU # _model_server_result.job_id o24_qWDw83a0hKp-q_UJNg _model_server_result.datetime_utc '2024-10-25 20:21:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3biu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 3BIU # _exptl.entry_id 3BIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.9 _cell.angle_gamma 90 _cell.entry_id 3BIU _cell.length_a 70.7 _cell.length_b 71.5 _cell.length_c 72.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 D C1 NAG . H NAG 1 1_555 B ND2 ASN 53 H ASN 60 1_555 ? ? ? G ? ? ? ? ? ? ? ? 1.548 ? covale ? covale2 C C GLU 10 I GLU 62 1_555 C N TYS 11 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 C C TYS 11 I TYS 63 1_555 C N LEU 12 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 F NA NA . H NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 F NA NA . H NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc3 B O ARG 233 H ARG 221 1_555 E NA NA . H NA 601 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc4 B O LYS 236 H LYS 224 1_555 E NA NA . H NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 E NA NA . H NA 601 1_555 I O HOH . H HOH 1023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc6 E NA NA . H NA 601 1_555 I O HOH . H HOH 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc7 E NA NA . H NA 601 1_555 I O HOH . H HOH 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc8 E NA NA . H NA 601 1_555 I O HOH . H HOH 1117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 F NA NA . H NA 602 1_555 I O HOH . H HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc10 F NA NA . H NA 602 1_555 I O HOH . H HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BIU _atom_sites.fract_transf_matrix[1][1] 0.014144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002724 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 1 1 NAG NAG . E 5 NA H 1 601 601 NA NA . F 5 NA H 1 602 602 NA NA . G 6 10U H 1 999 999 10U 10U . H 7 HOH L 1 1004 1004 HOH HOH . H 7 HOH L 2 1007 1007 HOH HOH . H 7 HOH L 3 1018 1018 HOH HOH . H 7 HOH L 4 1028 1028 HOH HOH . H 7 HOH L 5 1030 1030 HOH HOH . H 7 HOH L 6 1039 1039 HOH HOH . H 7 HOH L 7 1040 1040 HOH HOH . H 7 HOH L 8 1052 1052 HOH HOH . H 7 HOH L 9 1062 1062 HOH HOH . H 7 HOH L 10 1064 1064 HOH HOH . H 7 HOH L 11 1076 1076 HOH HOH . H 7 HOH L 12 1092 1092 HOH HOH . H 7 HOH L 13 1110 1110 HOH HOH . H 7 HOH L 14 1118 1118 HOH HOH . H 7 HOH L 15 1120 1120 HOH HOH . H 7 HOH L 16 1121 1121 HOH HOH . H 7 HOH L 17 1122 1122 HOH HOH . H 7 HOH L 18 1126 1126 HOH HOH . H 7 HOH L 19 1130 1130 HOH HOH . H 7 HOH L 20 1133 1133 HOH HOH . H 7 HOH L 21 1134 1134 HOH HOH . H 7 HOH L 22 1141 1141 HOH HOH . H 7 HOH L 23 1144 1144 HOH HOH . H 7 HOH L 24 1148 1148 HOH HOH . H 7 HOH L 25 1162 1162 HOH HOH . H 7 HOH L 26 1163 1163 HOH HOH . I 7 HOH H 1 1001 1001 HOH HOH . I 7 HOH H 2 1002 1002 HOH HOH . I 7 HOH H 3 1003 1003 HOH HOH . I 7 HOH H 4 1005 1005 HOH HOH . I 7 HOH H 5 1006 1006 HOH HOH . I 7 HOH H 6 1009 1009 HOH HOH . I 7 HOH H 7 1010 1010 HOH HOH . I 7 HOH H 8 1011 1011 HOH HOH . I 7 HOH H 9 1012 1012 HOH HOH . I 7 HOH H 10 1013 1013 HOH HOH . I 7 HOH H 11 1015 1015 HOH HOH . I 7 HOH H 12 1016 1016 HOH HOH . I 7 HOH H 13 1017 1017 HOH HOH . I 7 HOH H 14 1019 1019 HOH HOH . I 7 HOH H 15 1020 1020 HOH HOH . I 7 HOH H 16 1021 1021 HOH HOH . I 7 HOH H 17 1022 1022 HOH HOH . I 7 HOH H 18 1023 1023 HOH HOH . I 7 HOH H 19 1024 1024 HOH HOH . I 7 HOH H 20 1025 1025 HOH HOH . I 7 HOH H 21 1026 1026 HOH HOH . I 7 HOH H 22 1027 1027 HOH HOH . I 7 HOH H 23 1029 1029 HOH HOH . I 7 HOH H 24 1031 1031 HOH HOH . I 7 HOH H 25 1032 1032 HOH HOH . I 7 HOH H 26 1033 1033 HOH HOH . I 7 HOH H 27 1034 1034 HOH HOH . I 7 HOH H 28 1035 1035 HOH HOH . I 7 HOH H 29 1036 1036 HOH HOH . I 7 HOH H 30 1037 1037 HOH HOH . I 7 HOH H 31 1038 1038 HOH HOH . I 7 HOH H 32 1041 1041 HOH HOH . I 7 HOH H 33 1042 1042 HOH HOH . I 7 HOH H 34 1043 1043 HOH HOH . I 7 HOH H 35 1044 1044 HOH HOH . I 7 HOH H 36 1045 1045 HOH HOH . I 7 HOH H 37 1046 1046 HOH HOH . I 7 HOH H 38 1047 1047 HOH HOH . I 7 HOH H 39 1048 1048 HOH HOH . I 7 HOH H 40 1049 1049 HOH HOH . I 7 HOH H 41 1050 1050 HOH HOH . I 7 HOH H 42 1051 1051 HOH HOH . I 7 HOH H 43 1053 1053 HOH HOH . I 7 HOH H 44 1054 1054 HOH HOH . I 7 HOH H 45 1055 1055 HOH HOH . I 7 HOH H 46 1056 1056 HOH HOH . I 7 HOH H 47 1057 1057 HOH HOH . I 7 HOH H 48 1058 1058 HOH HOH . I 7 HOH H 49 1059 1059 HOH HOH . I 7 HOH H 50 1060 1060 HOH HOH . I 7 HOH H 51 1061 1061 HOH HOH . I 7 HOH H 52 1063 1063 HOH HOH . I 7 HOH H 53 1065 1065 HOH HOH . I 7 HOH H 54 1066 1066 HOH HOH . I 7 HOH H 55 1067 1067 HOH HOH . I 7 HOH H 56 1068 1068 HOH HOH . I 7 HOH H 57 1069 1069 HOH HOH . I 7 HOH H 58 1070 1070 HOH HOH . I 7 HOH H 59 1071 1071 HOH HOH . I 7 HOH H 60 1072 1072 HOH HOH . I 7 HOH H 61 1073 1073 HOH HOH . I 7 HOH H 62 1074 1074 HOH HOH . I 7 HOH H 63 1075 1075 HOH HOH . I 7 HOH H 64 1077 1077 HOH HOH . I 7 HOH H 65 1078 1078 HOH HOH . I 7 HOH H 66 1079 1079 HOH HOH . I 7 HOH H 67 1080 1080 HOH HOH . I 7 HOH H 68 1081 1081 HOH HOH . I 7 HOH H 69 1082 1082 HOH HOH . I 7 HOH H 70 1083 1083 HOH HOH . I 7 HOH H 71 1084 1084 HOH HOH . I 7 HOH H 72 1085 1085 HOH HOH . I 7 HOH H 73 1086 1086 HOH HOH . I 7 HOH H 74 1087 1087 HOH HOH . I 7 HOH H 75 1088 1088 HOH HOH . I 7 HOH H 76 1089 1089 HOH HOH . I 7 HOH H 77 1090 1090 HOH HOH . I 7 HOH H 78 1091 1091 HOH HOH . I 7 HOH H 79 1093 1093 HOH HOH . I 7 HOH H 80 1094 1094 HOH HOH . I 7 HOH H 81 1095 1095 HOH HOH . I 7 HOH H 82 1096 1096 HOH HOH . I 7 HOH H 83 1097 1097 HOH HOH . I 7 HOH H 84 1098 1098 HOH HOH . I 7 HOH H 85 1099 1099 HOH HOH . I 7 HOH H 86 1100 1100 HOH HOH . I 7 HOH H 87 1101 1101 HOH HOH . I 7 HOH H 88 1102 1102 HOH HOH . I 7 HOH H 89 1103 1103 HOH HOH . I 7 HOH H 90 1104 1104 HOH HOH . I 7 HOH H 91 1105 1105 HOH HOH . I 7 HOH H 92 1106 1106 HOH HOH . I 7 HOH H 93 1107 1107 HOH HOH . I 7 HOH H 94 1108 1108 HOH HOH . I 7 HOH H 95 1109 1109 HOH HOH . I 7 HOH H 96 1111 1111 HOH HOH . I 7 HOH H 97 1112 1112 HOH HOH . I 7 HOH H 98 1113 1113 HOH HOH . I 7 HOH H 99 1114 1114 HOH HOH . I 7 HOH H 100 1115 1115 HOH HOH . I 7 HOH H 101 1116 1116 HOH HOH . I 7 HOH H 102 1117 1117 HOH HOH . I 7 HOH H 103 1123 1123 HOH HOH . I 7 HOH H 104 1124 1124 HOH HOH . I 7 HOH H 105 1125 1125 HOH HOH . I 7 HOH H 106 1127 1127 HOH HOH . I 7 HOH H 107 1128 1128 HOH HOH . I 7 HOH H 108 1129 1129 HOH HOH . I 7 HOH H 109 1131 1131 HOH HOH . I 7 HOH H 110 1132 1132 HOH HOH . I 7 HOH H 111 1135 1135 HOH HOH . I 7 HOH H 112 1136 1136 HOH HOH . I 7 HOH H 113 1137 1137 HOH HOH . I 7 HOH H 114 1138 1138 HOH HOH . I 7 HOH H 115 1139 1139 HOH HOH . I 7 HOH H 116 1140 1140 HOH HOH . I 7 HOH H 117 1142 1142 HOH HOH . I 7 HOH H 118 1143 1143 HOH HOH . I 7 HOH H 119 1145 1145 HOH HOH . I 7 HOH H 120 1146 1146 HOH HOH . I 7 HOH H 121 1147 1147 HOH HOH . I 7 HOH H 122 1149 1149 HOH HOH . I 7 HOH H 123 1150 1150 HOH HOH . I 7 HOH H 124 1151 1151 HOH HOH . I 7 HOH H 125 1152 1152 HOH HOH . I 7 HOH H 126 1153 1153 HOH HOH . I 7 HOH H 127 1154 1154 HOH HOH . I 7 HOH H 128 1155 1155 HOH HOH . I 7 HOH H 129 1156 1156 HOH HOH . I 7 HOH H 130 1157 1157 HOH HOH . I 7 HOH H 131 1158 1158 HOH HOH . I 7 HOH H 132 1159 1159 HOH HOH . I 7 HOH H 133 1160 1160 HOH HOH . I 7 HOH H 134 1161 1161 HOH HOH . I 7 HOH H 135 1164 1164 HOH HOH . I 7 HOH H 136 1165 1165 HOH HOH . J 7 HOH I 1 1119 1119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 5.442 _atom_site.Cartn_y -13.02 _atom_site.Cartn_z 30.517 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #