data_3BJM
#
_model_server_result.job_id            3eHJc8eNjEbmt35bAoC5aw 
_model_server_result.datetime_utc      '2024-11-26 01:04:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bjm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":769}' 
#
_entry.id    3BJM 
#
_exptl.entry_id    3BJM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BJM 
_cell.length_a            65.278 
_cell.length_b            67.954 
_cell.length_c            423.816 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BJM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
covale ? covale1 H C22 BJM . A BJM 1 1_555 A OG SER 592 A SER 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale2 L C22 BJM . B BJM 2 1_555 B OG SER 592 B SER 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 291 n n 
C1 O1 NAG sing 292 n n 
C1 O5 NAG sing 293 n n 
C1 H1 NAG sing 294 n n 
C2 C3 NAG sing 295 n n 
C2 N2 NAG sing 296 n n 
C2 H2 NAG sing 297 n n 
C3 C4 NAG sing 298 n n 
C3 O3 NAG sing 299 n n 
C3 H3 NAG sing 300 n n 
C4 C5 NAG sing 301 n n 
C4 O4 NAG sing 302 n n 
C4 H4 NAG sing 303 n n 
C5 C6 NAG sing 304 n n 
C5 O5 NAG sing 305 n n 
C5 H5 NAG sing 306 n n 
C6 O6 NAG sing 307 n n 
C6 H61 NAG sing 308 n n 
C6 H62 NAG sing 309 n n 
C7 C8 NAG sing 310 n n 
C7 N2 NAG sing 311 n n 
C7 O7 NAG doub 312 n n 
C8 H81 NAG sing 313 n n 
C8 H82 NAG sing 314 n n 
C8 H83 NAG sing 315 n n 
N2 HN2 NAG sing 316 n n 
O1 HO1 NAG sing 317 n n 
O3 HO3 NAG sing 318 n n 
O4 HO4 NAG sing 319 n n 
O6 HO6 NAG sing 320 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3BJM 
_atom_sites.fract_transf_matrix[1][1]    0.015319 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014716 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00236 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 767 767 NAG NAG . 
D 2 NAG A 1 768 768 NAG NAG . 
E 2 NAG A 1 769 769 NAG NAG . 
F 2 NAG A 1 770 770 NAG NAG . 
G 2 NAG A 1 771 771 NAG NAG . 
H 3 BJM A 1 1 1 BJM BJM . 
I 2 NAG B 1 767 767 NAG NAG . 
J 2 NAG B 1 768 768 NAG NAG . 
K 2 NAG B 1 769 769 NAG NAG . 
L 3 BJM B 1 2 2 BJM BJM . 
M 4 HOH A 1 772 772 HOH HOH . 
M 4 HOH A 2 773 773 HOH HOH . 
M 4 HOH A 3 774 774 HOH HOH . 
M 4 HOH A 4 775 775 HOH HOH . 
M 4 HOH A 5 776 776 HOH HOH . 
M 4 HOH A 6 777 777 HOH HOH . 
M 4 HOH A 7 778 778 HOH HOH . 
M 4 HOH A 8 779 779 HOH HOH . 
M 4 HOH A 9 780 780 HOH HOH . 
M 4 HOH A 10 781 781 HOH HOH . 
M 4 HOH A 11 782 782 HOH HOH . 
M 4 HOH A 12 783 783 HOH HOH . 
M 4 HOH A 13 784 784 HOH HOH . 
M 4 HOH A 14 785 785 HOH HOH . 
M 4 HOH A 15 786 786 HOH HOH . 
M 4 HOH A 16 787 787 HOH HOH . 
M 4 HOH A 17 788 788 HOH HOH . 
M 4 HOH A 18 789 789 HOH HOH . 
M 4 HOH A 19 790 790 HOH HOH . 
M 4 HOH A 20 791 791 HOH HOH . 
M 4 HOH A 21 792 792 HOH HOH . 
M 4 HOH A 22 793 793 HOH HOH . 
M 4 HOH A 23 794 794 HOH HOH . 
M 4 HOH A 24 795 795 HOH HOH . 
M 4 HOH A 25 796 796 HOH HOH . 
M 4 HOH A 26 797 797 HOH HOH . 
M 4 HOH A 27 798 798 HOH HOH . 
M 4 HOH A 28 799 799 HOH HOH . 
M 4 HOH A 29 800 800 HOH HOH . 
M 4 HOH A 30 801 801 HOH HOH . 
M 4 HOH A 31 802 802 HOH HOH . 
M 4 HOH A 32 803 803 HOH HOH . 
M 4 HOH A 33 804 804 HOH HOH . 
M 4 HOH A 34 805 805 HOH HOH . 
M 4 HOH A 35 806 806 HOH HOH . 
M 4 HOH A 36 807 807 HOH HOH . 
M 4 HOH A 37 808 808 HOH HOH . 
M 4 HOH A 38 809 809 HOH HOH . 
M 4 HOH A 39 810 810 HOH HOH . 
M 4 HOH A 40 811 811 HOH HOH . 
M 4 HOH A 41 812 812 HOH HOH . 
M 4 HOH A 42 813 813 HOH HOH . 
M 4 HOH A 43 814 814 HOH HOH . 
M 4 HOH A 44 815 815 HOH HOH . 
M 4 HOH A 45 816 816 HOH HOH . 
M 4 HOH A 46 817 817 HOH HOH . 
M 4 HOH A 47 818 818 HOH HOH . 
M 4 HOH A 48 819 819 HOH HOH . 
M 4 HOH A 49 820 820 HOH HOH . 
M 4 HOH A 50 821 821 HOH HOH . 
M 4 HOH A 51 822 822 HOH HOH . 
M 4 HOH A 52 823 823 HOH HOH . 
M 4 HOH A 53 824 824 HOH HOH . 
M 4 HOH A 54 825 825 HOH HOH . 
M 4 HOH A 55 826 826 HOH HOH . 
M 4 HOH A 56 827 827 HOH HOH . 
M 4 HOH A 57 828 828 HOH HOH . 
M 4 HOH A 58 829 829 HOH HOH . 
M 4 HOH A 59 830 830 HOH HOH . 
M 4 HOH A 60 831 831 HOH HOH . 
M 4 HOH A 61 832 832 HOH HOH . 
M 4 HOH A 62 833 833 HOH HOH . 
N 4 HOH B 1 770 770 HOH HOH . 
N 4 HOH B 2 771 771 HOH HOH . 
N 4 HOH B 3 772 772 HOH HOH . 
N 4 HOH B 4 773 773 HOH HOH . 
N 4 HOH B 5 774 774 HOH HOH . 
N 4 HOH B 6 775 775 HOH HOH . 
N 4 HOH B 7 776 776 HOH HOH . 
N 4 HOH B 8 777 777 HOH HOH . 
N 4 HOH B 9 778 778 HOH HOH . 
N 4 HOH B 10 779 779 HOH HOH . 
N 4 HOH B 11 780 780 HOH HOH . 
N 4 HOH B 12 781 781 HOH HOH . 
N 4 HOH B 13 782 782 HOH HOH . 
N 4 HOH B 14 783 783 HOH HOH . 
N 4 HOH B 15 784 784 HOH HOH . 
N 4 HOH B 16 785 785 HOH HOH . 
N 4 HOH B 17 786 786 HOH HOH . 
N 4 HOH B 18 787 787 HOH HOH . 
N 4 HOH B 19 788 788 HOH HOH . 
N 4 HOH B 20 789 789 HOH HOH . 
N 4 HOH B 21 790 790 HOH HOH . 
N 4 HOH B 22 791 791 HOH HOH . 
N 4 HOH B 23 792 792 HOH HOH . 
N 4 HOH B 24 793 793 HOH HOH . 
N 4 HOH B 25 794 794 HOH HOH . 
N 4 HOH B 26 795 795 HOH HOH . 
N 4 HOH B 27 796 796 HOH HOH . 
N 4 HOH B 28 797 797 HOH HOH . 
N 4 HOH B 29 798 798 HOH HOH . 
N 4 HOH B 30 799 799 HOH HOH . 
N 4 HOH B 31 800 800 HOH HOH . 
N 4 HOH B 32 801 801 HOH HOH . 
N 4 HOH B 33 802 802 HOH HOH . 
N 4 HOH B 34 803 803 HOH HOH . 
N 4 HOH B 35 804 804 HOH HOH . 
N 4 HOH B 36 805 805 HOH HOH . 
N 4 HOH B 37 806 806 HOH HOH . 
N 4 HOH B 38 807 807 HOH HOH . 
N 4 HOH B 39 808 808 HOH HOH . 
N 4 HOH B 40 809 809 HOH HOH . 
N 4 HOH B 41 810 810 HOH HOH . 
N 4 HOH B 42 811 811 HOH HOH . 
N 4 HOH B 43 812 812 HOH HOH . 
N 4 HOH B 44 813 813 HOH HOH . 
N 4 HOH B 45 814 814 HOH HOH . 
N 4 HOH B 46 815 815 HOH HOH . 
N 4 HOH B 47 816 816 HOH HOH . 
N 4 HOH B 48 817 817 HOH HOH . 
N 4 HOH B 49 818 818 HOH HOH . 
N 4 HOH B 50 819 819 HOH HOH . 
N 4 HOH B 51 820 820 HOH HOH . 
N 4 HOH B 52 821 821 HOH HOH . 
N 4 HOH B 53 822 822 HOH HOH . 
N 4 HOH B 54 823 823 HOH HOH . 
N 4 HOH B 55 824 824 HOH HOH . 
N 4 HOH B 56 825 825 HOH HOH . 
N 4 HOH B 57 826 826 HOH HOH . 
N 4 HOH B 58 827 827 HOH HOH . 
N 4 HOH B 59 828 828 HOH HOH . 
N 4 HOH B 60 829 829 HOH HOH . 
N 4 HOH B 61 830 830 HOH HOH . 
N 4 HOH B 62 831 831 HOH HOH . 
N 4 HOH B 63 832 832 HOH HOH . 
N 4 HOH B 64 833 833 HOH HOH . 
N 4 HOH B 65 834 834 HOH HOH . 
N 4 HOH B 66 835 835 HOH HOH . 
N 4 HOH B 67 836 836 HOH HOH . 
N 4 HOH B 68 837 837 HOH HOH . 
N 4 HOH B 69 838 838 HOH HOH . 
N 4 HOH B 70 839 839 HOH HOH . 
N 4 HOH B 71 840 840 HOH HOH . 
N 4 HOH B 72 841 841 HOH HOH . 
N 4 HOH B 73 842 842 HOH HOH . 
N 4 HOH B 74 843 843 HOH HOH . 
N 4 HOH B 75 844 844 HOH HOH . 
N 4 HOH B 76 845 845 HOH HOH . 
N 4 HOH B 77 846 846 HOH HOH . 
N 4 HOH B 78 847 847 HOH HOH . 
N 4 HOH B 79 848 848 HOH HOH . 
N 4 HOH B 80 849 849 HOH HOH . 
N 4 HOH B 81 850 850 HOH HOH . 
N 4 HOH B 82 851 851 HOH HOH . 
N 4 HOH B 83 852 852 HOH HOH . 
N 4 HOH B 84 853 853 HOH HOH . 
N 4 HOH B 85 854 854 HOH HOH . 
N 4 HOH B 86 855 855 HOH HOH . 
N 4 HOH B 87 856 856 HOH HOH . 
N 4 HOH B 88 857 857 HOH HOH . 
N 4 HOH B 89 858 858 HOH HOH . 
N 4 HOH B 90 859 859 HOH HOH . 
N 4 HOH B 91 860 860 HOH HOH . 
N 4 HOH B 92 861 861 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . K 2 45.995 89.437 65.271 1 39.5 ? C1 NAG 769 B 1 
HETATM 2 C C2 NAG . . . K 2 44.91 90.311 65.895 1 40.77 ? C2 NAG 769 B 1 
HETATM 3 C C3 NAG . . . K 2 44.022 90.883 64.788 1 42.77 ? C3 NAG 769 B 1 
HETATM 4 C C4 NAG . . . K 2 44.87 91.577 63.703 1 44.2 ? C4 NAG 769 B 1 
HETATM 5 C C5 NAG . . . K 2 46.022 90.659 63.244 1 42.96 ? C5 NAG 769 B 1 
HETATM 6 C C6 NAG . . . K 2 46.996 91.339 62.316 1 43.03 ? C6 NAG 769 B 1 
HETATM 7 C C7 NAG . . . K 2 44.081 89.843 68.115 1 39.79 ? C7 NAG 769 B 1 
HETATM 8 C C8 NAG . . . K 2 42.998 89.202 68.973 1 39.56 ? C8 NAG 769 B 1 
HETATM 9 N N2 NAG . . . K 2 44.112 89.525 66.823 1 40.12 ? N2 NAG 769 B 1 
HETATM 10 O O3 NAG . . . K 2 43.121 91.819 65.362 1 42.83 ? O3 NAG 769 B 1 
HETATM 11 O O4 NAG . . . K 2 44.049 91.913 62.584 1 48 ? O4 NAG 769 B 1 
HETATM 12 O O5 NAG . . . K 2 46.788 90.211 64.382 1 40.8 ? O5 NAG 769 B 1 
HETATM 13 O O6 NAG . . . K 2 48.331 91.134 62.765 1 43.57 ? O6 NAG 769 B 1 
HETATM 14 O O7 NAG . . . K 2 44.881 90.623 68.628 1 39.42 ? O7 NAG 769 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#