data_3BK5 # _model_server_result.job_id yvjdp4KeCqw0mBvVZEIclg _model_server_result.datetime_utc '2025-04-20 21:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":235}' # _entry.id 3BK5 # _exptl.entry_id 3BK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BK5 _cell.length_a 48.157 _cell.length_b 128.874 _cell.length_c 41.968 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 26 A THR 23 1_555 A N MSE 27 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 27 A MSE 24 1_555 A N GLU 28 A GLU 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale3 A C GLU 28 A GLU 25 1_555 A N MSE 29 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 29 A MSE 26 1_555 A N ILE 30 A ILE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C LEU 42 A LEU 39 1_555 A N MSE 43 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 43 A MSE 40 1_555 A N ARG 44 A ARG 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale7 A C PHE 106 A PHE 103 1_555 A N MSE 107 A MSE 104 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C PHE 106 A PHE 103 1_555 A N MSE 107 A MSE 104 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C MSE 107 A MSE 104 1_555 A N GLY 108 A GLY 105 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale10 A C MSE 107 A MSE 104 1_555 A N GLY 108 A GLY 105 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 A C THR 200 A THR 197 1_555 A N MSE 201 A MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 A C MSE 201 A MSE 198 1_555 A N ALA 202 A ALA 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 A C ALA 202 A ALA 199 1_555 A N MSE 203 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale14 A C MSE 203 A MSE 200 1_555 A N THR 204 A THR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NE2 HIS 128 A HIS 125 1_555 B MG MG . A MG 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 A OD1 ASP 131 A ASP 128 1_555 B MG MG . A MG 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BK5 _atom_sites.fract_transf_matrix[1][1] 0.020765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 235 1 MG MG . C 3 HOH A 1 236 17 HOH HOH . C 3 HOH A 2 237 20 HOH HOH . C 3 HOH A 3 238 53 HOH HOH . C 3 HOH A 4 239 55 HOH HOH . C 3 HOH A 5 240 61 HOH HOH . C 3 HOH A 6 241 67 HOH HOH . C 3 HOH A 7 242 68 HOH HOH . C 3 HOH A 8 243 69 HOH HOH . C 3 HOH A 9 244 71 HOH HOH . C 3 HOH A 10 245 72 HOH HOH . C 3 HOH A 11 246 74 HOH HOH . C 3 HOH A 12 247 75 HOH HOH . C 3 HOH A 13 248 77 HOH HOH . C 3 HOH A 14 249 78 HOH HOH . C 3 HOH A 15 250 83 HOH HOH . C 3 HOH A 16 251 85 HOH HOH . C 3 HOH A 17 252 87 HOH HOH . C 3 HOH A 18 253 88 HOH HOH . C 3 HOH A 19 254 90 HOH HOH . C 3 HOH A 20 255 92 HOH HOH . C 3 HOH A 21 256 94 HOH HOH . C 3 HOH A 22 257 96 HOH HOH . C 3 HOH A 23 258 98 HOH HOH . C 3 HOH A 24 259 100 HOH HOH . C 3 HOH A 25 260 101 HOH HOH . C 3 HOH A 26 261 102 HOH HOH . C 3 HOH A 27 262 103 HOH HOH . C 3 HOH A 28 263 104 HOH HOH . C 3 HOH A 29 264 105 HOH HOH . C 3 HOH A 30 265 106 HOH HOH . C 3 HOH A 31 266 111 HOH HOH . C 3 HOH A 32 267 114 HOH HOH . C 3 HOH A 33 268 116 HOH HOH . C 3 HOH A 34 269 118 HOH HOH . C 3 HOH A 35 270 120 HOH HOH . C 3 HOH A 36 271 121 HOH HOH . C 3 HOH A 37 272 123 HOH HOH . C 3 HOH A 38 273 125 HOH HOH . C 3 HOH A 39 274 127 HOH HOH . C 3 HOH A 40 275 129 HOH HOH . C 3 HOH A 41 276 130 HOH HOH . C 3 HOH A 42 277 131 HOH HOH . C 3 HOH A 43 278 132 HOH HOH . C 3 HOH A 44 279 133 HOH HOH . C 3 HOH A 45 280 134 HOH HOH . C 3 HOH A 46 281 135 HOH HOH . C 3 HOH A 47 282 137 HOH HOH . C 3 HOH A 48 283 138 HOH HOH . C 3 HOH A 49 284 140 HOH HOH . C 3 HOH A 50 285 141 HOH HOH . C 3 HOH A 51 286 142 HOH HOH . C 3 HOH A 52 287 143 HOH HOH . C 3 HOH A 53 288 144 HOH HOH . C 3 HOH A 54 289 145 HOH HOH . C 3 HOH A 55 290 147 HOH HOH . C 3 HOH A 56 291 153 HOH HOH . C 3 HOH A 57 292 154 HOH HOH . C 3 HOH A 58 293 155 HOH HOH . C 3 HOH A 59 294 156 HOH HOH . C 3 HOH A 60 295 158 HOH HOH . C 3 HOH A 61 296 159 HOH HOH . C 3 HOH A 62 297 160 HOH HOH . C 3 HOH A 63 298 161 HOH HOH . C 3 HOH A 64 299 162 HOH HOH . C 3 HOH A 65 300 163 HOH HOH . C 3 HOH A 66 301 166 HOH HOH . C 3 HOH A 67 302 172 HOH HOH . C 3 HOH A 68 303 174 HOH HOH . C 3 HOH A 69 304 177 HOH HOH . C 3 HOH A 70 305 178 HOH HOH . C 3 HOH A 71 306 179 HOH HOH . C 3 HOH A 72 307 181 HOH HOH . C 3 HOH A 73 308 184 HOH HOH . C 3 HOH A 74 309 191 HOH HOH . C 3 HOH A 75 310 192 HOH HOH . C 3 HOH A 76 311 194 HOH HOH . C 3 HOH A 77 312 196 HOH HOH . C 3 HOH A 78 313 197 HOH HOH . C 3 HOH A 79 314 198 HOH HOH . C 3 HOH A 80 315 202 HOH HOH . C 3 HOH A 81 316 203 HOH HOH . C 3 HOH A 82 317 206 HOH HOH . C 3 HOH A 83 318 207 HOH HOH . C 3 HOH A 84 319 209 HOH HOH . C 3 HOH A 85 320 210 HOH HOH . C 3 HOH A 86 321 211 HOH HOH . C 3 HOH A 87 322 212 HOH HOH . C 3 HOH A 88 323 216 HOH HOH . C 3 HOH A 89 324 217 HOH HOH . C 3 HOH A 90 325 219 HOH HOH . C 3 HOH A 91 326 230 HOH HOH . C 3 HOH A 92 327 233 HOH HOH . C 3 HOH A 93 328 235 HOH HOH . C 3 HOH A 94 329 239 HOH HOH . C 3 HOH A 95 330 243 HOH HOH . C 3 HOH A 96 331 244 HOH HOH . C 3 HOH A 97 332 245 HOH HOH . C 3 HOH A 98 333 248 HOH HOH . C 3 HOH A 99 334 249 HOH HOH . C 3 HOH A 100 335 250 HOH HOH . C 3 HOH A 101 336 251 HOH HOH . C 3 HOH A 102 337 252 HOH HOH . C 3 HOH A 103 338 253 HOH HOH . C 3 HOH A 104 339 254 HOH HOH . C 3 HOH A 105 340 255 HOH HOH . C 3 HOH A 106 341 256 HOH HOH . C 3 HOH A 107 342 257 HOH HOH . C 3 HOH A 108 343 258 HOH HOH . C 3 HOH A 109 344 260 HOH HOH . C 3 HOH A 110 345 262 HOH HOH . C 3 HOH A 111 346 263 HOH HOH . C 3 HOH A 112 347 264 HOH HOH . C 3 HOH A 113 348 265 HOH HOH . C 3 HOH A 114 349 266 HOH HOH . C 3 HOH A 115 350 267 HOH HOH . C 3 HOH A 116 351 268 HOH HOH . C 3 HOH A 117 352 269 HOH HOH . C 3 HOH A 118 353 270 HOH HOH . C 3 HOH A 119 354 271 HOH HOH . C 3 HOH A 120 355 277 HOH HOH . C 3 HOH A 121 356 278 HOH HOH . C 3 HOH A 122 357 280 HOH HOH . C 3 HOH A 123 358 281 HOH HOH . C 3 HOH A 124 359 282 HOH HOH . C 3 HOH A 125 360 284 HOH HOH . C 3 HOH A 126 361 286 HOH HOH . C 3 HOH A 127 362 287 HOH HOH . C 3 HOH A 128 363 288 HOH HOH . C 3 HOH A 129 364 290 HOH HOH . C 3 HOH A 130 365 291 HOH HOH . C 3 HOH A 131 366 294 HOH HOH . C 3 HOH A 132 367 295 HOH HOH . C 3 HOH A 133 368 296 HOH HOH . C 3 HOH A 134 369 297 HOH HOH . C 3 HOH A 135 370 298 HOH HOH . C 3 HOH A 136 371 300 HOH HOH . C 3 HOH A 137 372 301 HOH HOH . C 3 HOH A 138 373 302 HOH HOH . C 3 HOH A 139 374 8 HOH HOH . C 3 HOH A 140 375 13 HOH HOH . C 3 HOH A 141 376 16 HOH HOH . C 3 HOH A 142 377 18 HOH HOH . C 3 HOH A 143 378 22 HOH HOH . C 3 HOH A 144 379 23 HOH HOH . C 3 HOH A 145 380 26 HOH HOH . C 3 HOH A 146 381 35 HOH HOH . C 3 HOH A 147 382 41 HOH HOH . C 3 HOH A 148 383 52 HOH HOH . C 3 HOH A 149 384 57 HOH HOH . C 3 HOH A 150 385 58 HOH HOH . C 3 HOH A 151 386 66 HOH HOH . C 3 HOH A 152 387 70 HOH HOH . C 3 HOH A 153 388 81 HOH HOH . C 3 HOH A 154 389 82 HOH HOH . C 3 HOH A 155 390 89 HOH HOH . C 3 HOH A 156 391 100 HOH HOH . C 3 HOH A 157 392 109 HOH HOH . C 3 HOH A 158 393 112 HOH HOH . C 3 HOH A 159 394 117 HOH HOH . C 3 HOH A 160 395 118 HOH HOH . C 3 HOH A 161 396 123 HOH HOH . C 3 HOH A 162 397 3 HOH HOH . C 3 HOH A 163 398 10 HOH HOH . C 3 HOH A 164 399 11 HOH HOH . C 3 HOH A 165 400 12 HOH HOH . C 3 HOH A 166 401 21 HOH HOH . C 3 HOH A 167 402 34 HOH HOH . C 3 HOH A 168 403 35 HOH HOH . C 3 HOH A 169 404 54 HOH HOH . C 3 HOH A 170 405 64 HOH HOH . C 3 HOH A 171 406 79 HOH HOH . C 3 HOH A 172 407 8 HOH HOH . C 3 HOH A 173 408 2 HOH HOH . C 3 HOH A 174 409 10 HOH HOH . C 3 HOH A 175 410 58 HOH HOH . C 3 HOH A 176 411 1 HOH HOH . C 3 HOH A 177 412 56 HOH HOH . C 3 HOH A 178 413 1 HOH HOH . C 3 HOH A 179 414 2 HOH HOH . C 3 HOH A 180 415 3 HOH HOH . C 3 HOH A 181 416 4 HOH HOH . C 3 HOH A 182 417 5 HOH HOH . C 3 HOH A 183 418 6 HOH HOH . C 3 HOH A 184 419 7 HOH HOH . C 3 HOH A 185 420 8 HOH HOH . C 3 HOH A 186 421 10 HOH HOH . C 3 HOH A 187 422 12 HOH HOH . C 3 HOH A 188 423 13 HOH HOH . C 3 HOH A 189 424 15 HOH HOH . C 3 HOH A 190 425 17 HOH HOH . C 3 HOH A 191 426 18 HOH HOH . C 3 HOH A 192 427 23 HOH HOH . C 3 HOH A 193 428 24 HOH HOH . C 3 HOH A 194 429 25 HOH HOH . C 3 HOH A 195 430 26 HOH HOH . C 3 HOH A 196 431 27 HOH HOH . C 3 HOH A 197 432 28 HOH HOH . C 3 HOH A 198 433 29 HOH HOH . C 3 HOH A 199 434 30 HOH HOH . C 3 HOH A 200 435 34 HOH HOH . C 3 HOH A 201 436 40 HOH HOH . C 3 HOH A 202 437 56 HOH HOH . C 3 HOH A 203 438 115 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -9.837 _atom_site.Cartn_y 7.372 _atom_site.Cartn_z 8.834 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 235 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #