data_3BK7
#
_model_server_result.job_id            zlqacBLFCyAcj750xtI7nw 
_model_server_result.datetime_utc      '2025-03-04 07:35:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bk7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":599}' 
#
_entry.id    3BK7 
#
_exptl.entry_id    3BK7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BK7 
_cell.length_a            63.2 
_cell.length_b            63.2 
_cell.length_c            319.38 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BK7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 97 A CYS 83 1_555 A SG CYS 146 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A SG CYS 29 A CYS 15 1_555 E FE4 SF4 . A SF4 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc2 A SG CYS 34 A CYS 20 1_555 E FE2 SF4 . A SF4 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc3 A SG CYS 39 A CYS 25 1_555 E FE1 SF4 . A SF4 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 A SG CYS 43 A CYS 29 1_555 D FE1 SF4 . A SF4 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc5 A SG CYS 69 A CYS 55 1_555 D FE2 SF4 . A SF4 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc6 A SG CYS 72 A CYS 58 1_555 D FE4 SF4 . A SF4 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc7 A SG CYS 75 A CYS 61 1_555 D FE3 SF4 . A SF4 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc8 A SG CYS 79 A CYS 65 1_555 E FE3 SF4 . A SF4 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3BK7 
_atom_sites.fract_transf_matrix[1][1]    0.015823 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003131 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 594 2 MG MG . 
C 2 MG A 1 595 4 MG MG . 
D 3 SF4 A 1 596 1 SF4 SF4 . 
E 3 SF4 A 1 597 2 SF4 SF4 . 
F 4 ADP A 1 598 1 ADP ADP . 
G 4 ADP A 1 599 3 ADP ADP . 
H 5 HOH A 1 600 1 HOH WAT . 
H 5 HOH A 2 601 2 HOH WAT . 
H 5 HOH A 3 602 3 HOH WAT . 
H 5 HOH A 4 603 4 HOH WAT . 
H 5 HOH A 5 604 5 HOH WAT . 
H 5 HOH A 6 605 7 HOH WAT . 
H 5 HOH A 7 606 8 HOH WAT . 
H 5 HOH A 8 607 9 HOH WAT . 
H 5 HOH A 9 608 10 HOH WAT . 
H 5 HOH A 10 609 11 HOH WAT . 
H 5 HOH A 11 610 12 HOH WAT . 
H 5 HOH A 12 611 13 HOH WAT . 
H 5 HOH A 13 612 14 HOH WAT . 
H 5 HOH A 14 613 15 HOH WAT . 
H 5 HOH A 15 614 16 HOH WAT . 
H 5 HOH A 16 615 17 HOH WAT . 
H 5 HOH A 17 616 19 HOH WAT . 
H 5 HOH A 18 617 20 HOH WAT . 
H 5 HOH A 19 618 22 HOH WAT . 
H 5 HOH A 20 619 23 HOH WAT . 
H 5 HOH A 21 620 24 HOH WAT . 
H 5 HOH A 22 621 25 HOH WAT . 
H 5 HOH A 23 622 26 HOH WAT . 
H 5 HOH A 24 623 27 HOH WAT . 
H 5 HOH A 25 624 29 HOH WAT . 
H 5 HOH A 26 625 30 HOH WAT . 
H 5 HOH A 27 626 31 HOH WAT . 
H 5 HOH A 28 627 32 HOH WAT . 
H 5 HOH A 29 628 33 HOH WAT . 
H 5 HOH A 30 629 34 HOH WAT . 
H 5 HOH A 31 630 36 HOH WAT . 
H 5 HOH A 32 631 37 HOH WAT . 
H 5 HOH A 33 632 38 HOH WAT . 
H 5 HOH A 34 633 39 HOH WAT . 
H 5 HOH A 35 634 41 HOH WAT . 
H 5 HOH A 36 635 42 HOH WAT . 
H 5 HOH A 37 636 43 HOH WAT . 
H 5 HOH A 38 637 44 HOH WAT . 
H 5 HOH A 39 638 45 HOH WAT . 
H 5 HOH A 40 639 46 HOH WAT . 
H 5 HOH A 41 640 47 HOH WAT . 
H 5 HOH A 42 641 48 HOH WAT . 
H 5 HOH A 43 642 49 HOH WAT . 
H 5 HOH A 44 643 51 HOH WAT . 
H 5 HOH A 45 644 52 HOH WAT . 
H 5 HOH A 46 645 53 HOH WAT . 
H 5 HOH A 47 646 54 HOH WAT . 
H 5 HOH A 48 647 55 HOH WAT . 
H 5 HOH A 49 648 57 HOH WAT . 
H 5 HOH A 50 649 58 HOH WAT . 
H 5 HOH A 51 650 59 HOH WAT . 
H 5 HOH A 52 651 60 HOH WAT . 
H 5 HOH A 53 652 62 HOH WAT . 
H 5 HOH A 54 653 63 HOH WAT . 
H 5 HOH A 55 654 64 HOH WAT . 
H 5 HOH A 56 655 65 HOH WAT . 
H 5 HOH A 57 656 67 HOH WAT . 
H 5 HOH A 58 657 68 HOH WAT . 
H 5 HOH A 59 658 69 HOH WAT . 
H 5 HOH A 60 659 72 HOH WAT . 
H 5 HOH A 61 660 73 HOH WAT . 
H 5 HOH A 62 661 74 HOH WAT . 
H 5 HOH A 63 662 75 HOH WAT . 
H 5 HOH A 64 663 76 HOH WAT . 
H 5 HOH A 65 664 77 HOH WAT . 
H 5 HOH A 66 665 78 HOH WAT . 
H 5 HOH A 67 666 79 HOH WAT . 
H 5 HOH A 68 667 80 HOH WAT . 
H 5 HOH A 69 668 81 HOH WAT . 
H 5 HOH A 70 669 82 HOH WAT . 
H 5 HOH A 71 670 83 HOH WAT . 
H 5 HOH A 72 671 84 HOH WAT . 
H 5 HOH A 73 672 85 HOH WAT . 
H 5 HOH A 74 673 86 HOH WAT . 
H 5 HOH A 75 674 87 HOH WAT . 
H 5 HOH A 76 675 88 HOH WAT . 
H 5 HOH A 77 676 89 HOH WAT . 
H 5 HOH A 78 677 90 HOH WAT . 
H 5 HOH A 79 678 92 HOH WAT . 
H 5 HOH A 80 679 93 HOH WAT . 
H 5 HOH A 81 680 94 HOH WAT . 
H 5 HOH A 82 681 95 HOH WAT . 
H 5 HOH A 83 682 96 HOH WAT . 
H 5 HOH A 84 683 97 HOH WAT . 
H 5 HOH A 85 684 98 HOH WAT . 
H 5 HOH A 86 685 100 HOH WAT . 
H 5 HOH A 87 686 101 HOH WAT . 
H 5 HOH A 88 687 102 HOH WAT . 
H 5 HOH A 89 688 103 HOH WAT . 
H 5 HOH A 90 689 105 HOH WAT . 
H 5 HOH A 91 690 106 HOH WAT . 
H 5 HOH A 92 691 107 HOH WAT . 
H 5 HOH A 93 692 108 HOH WAT . 
H 5 HOH A 94 693 109 HOH WAT . 
H 5 HOH A 95 694 110 HOH WAT . 
H 5 HOH A 96 695 111 HOH WAT . 
H 5 HOH A 97 696 112 HOH WAT . 
H 5 HOH A 98 697 115 HOH WAT . 
H 5 HOH A 99 698 117 HOH WAT . 
H 5 HOH A 100 699 119 HOH WAT . 
H 5 HOH A 101 700 121 HOH WAT . 
H 5 HOH A 102 701 122 HOH WAT . 
H 5 HOH A 103 702 123 HOH WAT . 
H 5 HOH A 104 703 125 HOH WAT . 
H 5 HOH A 105 704 126 HOH WAT . 
H 5 HOH A 106 705 127 HOH WAT . 
H 5 HOH A 107 706 128 HOH WAT . 
H 5 HOH A 108 707 129 HOH WAT . 
H 5 HOH A 109 708 130 HOH WAT . 
H 5 HOH A 110 709 131 HOH WAT . 
H 5 HOH A 111 710 132 HOH WAT . 
H 5 HOH A 112 711 133 HOH WAT . 
H 5 HOH A 113 712 134 HOH WAT . 
H 5 HOH A 114 713 135 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 4 -21.512 -4.309 -14.841 1 13.96 ? PB ADP 599 A 1 
HETATM 2 O O1B ADP . . . G 4 -22.148 -5.643 -14.607 1 18.01 ? O1B ADP 599 A 1 
HETATM 3 O O2B ADP . . . G 4 -22.31 -3.102 -14.599 1 13.89 ? O2B ADP 599 A 1 
HETATM 4 O O3B ADP . . . G 4 -20.938 -4.314 -16.371 1 13.77 ? O3B ADP 599 A 1 
HETATM 5 P PA ADP . . . G 4 -19.259 -5.381 -13.247 1 15.85 ? PA ADP 599 A 1 
HETATM 6 O O1A ADP . . . G 4 -20.011 -5.822 -12.071 1 16.53 ? O1A ADP 599 A 1 
HETATM 7 O O2A ADP . . . G 4 -18.734 -6.411 -14.18 1 17.32 ? O2A ADP 599 A 1 
HETATM 8 O O3A ADP . . . G 4 -20.163 -4.315 -14.025 1 17.29 ? O3A ADP 599 A 1 
HETATM 9 O O5' ADP . . . G 4 -18.067 -4.509 -12.72 1 19.76 ? O5' ADP 599 A 1 
HETATM 10 C C5' ADP . . . G 4 -18.079 -3.075 -12.564 1 22.48 ? C5' ADP 599 A 1 
HETATM 11 C C4' ADP . . . G 4 -16.66 -2.549 -12.587 1 24.66 ? C4' ADP 599 A 1 
HETATM 12 O O4' ADP . . . G 4 -15.883 -3.385 -11.701 1 26.67 ? O4' ADP 599 A 1 
HETATM 13 C C3' ADP . . . G 4 -15.977 -2.6 -13.946 1 26.02 ? C3' ADP 599 A 1 
HETATM 14 O O3' ADP . . . G 4 -15.323 -1.35 -14.126 1 26.74 ? O3' ADP 599 A 1 
HETATM 15 C C2' ADP . . . G 4 -15.036 -3.739 -13.808 1 27.19 ? C2' ADP 599 A 1 
HETATM 16 O O2' ADP . . . G 4 -13.848 -3.599 -14.572 1 30.06 ? O2' ADP 599 A 1 
HETATM 17 C C1' ADP . . . G 4 -14.681 -3.815 -12.326 1 27.81 ? C1' ADP 599 A 1 
HETATM 18 N N9 ADP . . . G 4 -14.397 -5.196 -11.924 1 29.13 ? N9 ADP 599 A 1 
HETATM 19 C C8 ADP . . . G 4 -15.189 -6.312 -12.079 1 31.03 ? C8 ADP 599 A 1 
HETATM 20 N N7 ADP . . . G 4 -14.677 -7.414 -11.637 1 32.31 ? N7 ADP 599 A 1 
HETATM 21 C C5 ADP . . . G 4 -13.455 -6.998 -11.15 1 33.23 ? C5 ADP 599 A 1 
HETATM 22 C C6 ADP . . . G 4 -12.387 -7.702 -10.536 1 34.21 ? C6 ADP 599 A 1 
HETATM 23 N N6 ADP . . . G 4 -12.485 -9.01 -10.331 1 35.77 ? N6 ADP 599 A 1 
HETATM 24 N N1 ADP . . . G 4 -11.27 -7.011 -10.15 1 32.25 ? N1 ADP 599 A 1 
HETATM 25 C C2 ADP . . . G 4 -11.206 -5.688 -10.371 1 33.05 ? C2 ADP 599 A 1 
HETATM 26 N N3 ADP . . . G 4 -12.147 -4.899 -10.946 1 33.93 ? N3 ADP 599 A 1 
HETATM 27 C C4 ADP . . . G 4 -13.264 -5.642 -11.325 1 31.82 ? C4 ADP 599 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#