data_3BKD # _model_server_result.job_id go5ow3dm9i5pzxTo9mT0tg _model_server_result.datetime_utc '2024-11-16 23:57:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bkd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 3BKD # _exptl.entry_id 3BKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.53 _cell.angle_gamma 90 _cell.entry_id 3BKD _cell.length_a 38.753 _cell.length_b 56.557 _cell.length_c 56.009 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression E,F,G,H,Q,R,S,T,U,V,AA,BA,CA,DA 1 1 A,B,C,D,I,J,K,L,M,N,O,P,W,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 11 A ILE 32 1_555 A N MSE 12 A MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 12 A MSE 33 1_555 A N GLY 13 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C LEU 25 A LEU 46 1_555 A N NH2 26 A NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? covale ? covale4 B C ILE 11 B ILE 32 1_555 B N MSE 12 B MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 B C MSE 12 B MSE 33 1_555 B N GLY 13 B GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C LEU 25 B LEU 46 1_555 B N NH2 26 B NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.264 ? covale ? covale7 C C ILE 11 C ILE 32 1_555 C N MSE 12 C MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 C C MSE 12 C MSE 33 1_555 C N GLY 13 C GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 C C LEU 25 C LEU 46 1_555 C N NH2 26 C NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 ? covale ? covale10 D C ILE 11 D ILE 32 1_555 D N MSE 12 D MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale11 D C MSE 12 D MSE 33 1_555 D N GLY 13 D GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 D C LEU 25 D LEU 46 1_555 D N NH2 26 D NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? covale ? covale13 E C ILE 11 E ILE 32 1_555 E N MSE 12 E MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale14 E C MSE 12 E MSE 33 1_555 E N GLY 13 E GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 E C LEU 25 E LEU 46 1_555 E N NH2 26 E NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? covale ? covale16 F C ILE 11 F ILE 32 1_555 F N MSE 12 F MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale17 F C MSE 12 F MSE 33 1_555 F N GLY 13 F GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 F C LEU 25 F LEU 46 1_555 F N NH2 26 F NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? covale ? covale19 G C ILE 11 G ILE 32 1_555 G N MSE 12 G MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 G C MSE 12 G MSE 33 1_555 G N GLY 13 G GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale21 G C LEU 25 G LEU 46 1_555 G N NH2 26 G NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? covale ? covale22 H C ILE 11 H ILE 32 1_555 H N MSE 12 H MSE 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale23 H C MSE 12 H MSE 33 1_555 H N GLY 13 H GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 H C LEU 25 H LEU 46 1_555 H N NH2 26 H NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BKD _atom_sites.fract_transf_matrix[1][1] 0.025804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006209 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 BOG A 1 302 302 BOG BOG . J 3 CL A 1 101 101 CL CL . K 4 PEG A 1 401 401 PEG PEG . L 4 PEG A 1 803 803 PEG PEG . M 2 BOG B 1 301 301 BOG BOG . N 4 PEG B 1 402 402 PEG PEG . O 4 PEG B 1 403 403 PEG PEG . P 2 BOG C 1 303 303 BOG BOG . Q 2 BOG E 1 702 702 BOG BOG . R 3 CL E 1 501 501 CL CL . S 4 PEG E 1 801 801 PEG PEG . T 4 PEG E 1 802 802 PEG PEG . U 2 BOG G 1 701 701 BOG BOG . V 2 BOG G 1 703 703 BOG BOG . W 5 HOH A 1 804 205 HOH HOH . W 5 HOH A 2 805 207 HOH HOH . W 5 HOH A 3 806 210 HOH HOH . W 5 HOH A 4 807 216 HOH HOH . W 5 HOH A 5 808 221 HOH HOH . W 5 HOH A 6 809 613 HOH HOH . X 5 HOH B 1 404 203 HOH HOH . X 5 HOH B 2 405 209 HOH HOH . X 5 HOH B 3 406 211 HOH HOH . X 5 HOH B 4 407 215 HOH HOH . Y 5 HOH C 1 304 202 HOH HOH . Y 5 HOH C 2 305 206 HOH HOH . Y 5 HOH C 3 306 212 HOH HOH . Y 5 HOH C 4 307 218 HOH HOH . Z 5 HOH D 1 48 201 HOH HOH . Z 5 HOH D 2 49 204 HOH HOH . Z 5 HOH D 3 50 208 HOH HOH . Z 5 HOH D 4 51 213 HOH HOH . Z 5 HOH D 5 52 217 HOH HOH . Z 5 HOH D 6 53 219 HOH HOH . Z 5 HOH D 7 54 220 HOH HOH . AA 5 HOH E 1 803 214 HOH HOH . AA 5 HOH E 2 804 601 HOH HOH . AA 5 HOH E 3 805 607 HOH HOH . AA 5 HOH E 4 806 610 HOH HOH . AA 5 HOH E 5 807 615 HOH HOH . AA 5 HOH E 6 808 618 HOH HOH . BA 5 HOH F 1 48 603 HOH HOH . BA 5 HOH F 2 49 609 HOH HOH . BA 5 HOH F 3 50 617 HOH HOH . CA 5 HOH G 1 704 602 HOH HOH . CA 5 HOH G 2 705 605 HOH HOH . CA 5 HOH G 3 706 606 HOH HOH . CA 5 HOH G 4 707 614 HOH HOH . DA 5 HOH H 1 48 604 HOH HOH . DA 5 HOH H 2 49 608 HOH HOH . DA 5 HOH H 3 50 611 HOH HOH . DA 5 HOH H 4 51 612 HOH HOH . DA 5 HOH H 5 52 616 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x -12.306 _atom_site.Cartn_y 13.771 _atom_site.Cartn_z -5.924 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #