data_3BKK # _model_server_result.job_id iBDGVVdWjspCC1gtQhcP2w _model_server_result.datetime_utc '2024-11-27 20:25:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 3BKK # _exptl.entry_id 3BKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BKK _cell.length_a 60.383 _cell.length_b 85.07 _cell.length_c 135.506 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 693 NAG 2 n B NAG 2 B 2 NAG A 694 NAG 2 n B FUC 3 B 3 FUC A 845 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 152 1_555 A SG CYS 122 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 316 A CYS 352 1_555 A SG CYS 334 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 502 A CYS 538 1_555 A SG CYS 514 A CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 36 A ASN 72 1_555 C C1 NAG . A NAG 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 73 A ASN 109 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale4 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? metalc ? metalc1 A NE2 HIS 347 A HIS 383 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc2 A NE2 HIS 351 A HIS 387 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 A OE1 GLU 375 A GLU 411 1_555 E ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 E ZN ZN . A ZN 701 1_555 H OAE KAF . A KAF 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BKK _atom_sites.fract_transf_matrix[1][1] 0.016561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00738 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 691 691 NAG NAG . D 3 NAG A 1 902 902 NAG NAG . E 4 ZN A 1 701 701 ZN ZN . F 5 CL A 1 702 702 CL CL . G 5 CL A 1 703 703 CL CL . H 6 KAF A 1 704 704 KAF KAF . I 7 HOH A 1 1000 1000 HOH HOH . I 7 HOH A 2 1001 1001 HOH HOH . I 7 HOH A 3 1002 1002 HOH HOH . I 7 HOH A 4 1003 1003 HOH HOH . I 7 HOH A 5 1004 1004 HOH HOH . I 7 HOH A 6 1005 1005 HOH HOH . I 7 HOH A 7 1006 1006 HOH HOH . I 7 HOH A 8 1007 1007 HOH HOH . I 7 HOH A 9 1008 1008 HOH HOH . I 7 HOH A 10 1009 1009 HOH HOH . I 7 HOH A 11 1010 1010 HOH HOH . I 7 HOH A 12 1011 1011 HOH HOH . I 7 HOH A 13 1012 1012 HOH HOH . I 7 HOH A 14 1013 1013 HOH HOH . I 7 HOH A 15 1014 1014 HOH HOH . I 7 HOH A 16 1015 1015 HOH HOH . I 7 HOH A 17 1016 1016 HOH HOH . I 7 HOH A 18 1017 1017 HOH HOH . I 7 HOH A 19 1018 1018 HOH HOH . I 7 HOH A 20 1019 1019 HOH HOH . I 7 HOH A 21 1020 1020 HOH HOH . I 7 HOH A 22 1021 1021 HOH HOH . I 7 HOH A 23 1022 1022 HOH HOH . I 7 HOH A 24 1023 1023 HOH HOH . I 7 HOH A 25 1024 1024 HOH HOH . I 7 HOH A 26 1025 1025 HOH HOH . I 7 HOH A 27 1026 1026 HOH HOH . I 7 HOH A 28 1027 1027 HOH HOH . I 7 HOH A 29 1028 1028 HOH HOH . I 7 HOH A 30 1029 1029 HOH HOH . I 7 HOH A 31 1030 1030 HOH HOH . I 7 HOH A 32 1031 1031 HOH HOH . I 7 HOH A 33 1032 1032 HOH HOH . I 7 HOH A 34 1033 1033 HOH HOH . I 7 HOH A 35 1034 1034 HOH HOH . I 7 HOH A 36 1035 1035 HOH HOH . I 7 HOH A 37 1036 1036 HOH HOH . I 7 HOH A 38 1037 1037 HOH HOH . I 7 HOH A 39 1038 1038 HOH HOH . I 7 HOH A 40 1039 1039 HOH HOH . I 7 HOH A 41 1040 1040 HOH HOH . I 7 HOH A 42 1041 1041 HOH HOH . I 7 HOH A 43 1042 1042 HOH HOH . I 7 HOH A 44 1043 1043 HOH HOH . I 7 HOH A 45 1044 1044 HOH HOH . I 7 HOH A 46 1045 1045 HOH HOH . I 7 HOH A 47 1046 1046 HOH HOH . I 7 HOH A 48 1047 1047 HOH HOH . I 7 HOH A 49 1048 1048 HOH HOH . I 7 HOH A 50 1049 1049 HOH HOH . I 7 HOH A 51 1050 1050 HOH HOH . I 7 HOH A 52 1051 1051 HOH HOH . I 7 HOH A 53 1052 1052 HOH HOH . I 7 HOH A 54 1053 1053 HOH HOH . I 7 HOH A 55 1054 1054 HOH HOH . I 7 HOH A 56 1055 1055 HOH HOH . I 7 HOH A 57 1056 1056 HOH HOH . I 7 HOH A 58 1057 1057 HOH HOH . I 7 HOH A 59 1058 1058 HOH HOH . I 7 HOH A 60 1059 1059 HOH HOH . I 7 HOH A 61 1060 1060 HOH HOH . I 7 HOH A 62 1061 1061 HOH HOH . I 7 HOH A 63 1062 1062 HOH HOH . I 7 HOH A 64 1063 1063 HOH HOH . I 7 HOH A 65 1064 1064 HOH HOH . I 7 HOH A 66 1065 1065 HOH HOH . I 7 HOH A 67 1066 1066 HOH HOH . I 7 HOH A 68 1067 1067 HOH HOH . I 7 HOH A 69 1068 1068 HOH HOH . I 7 HOH A 70 1069 1069 HOH HOH . I 7 HOH A 71 1070 1070 HOH HOH . I 7 HOH A 72 1071 1071 HOH HOH . I 7 HOH A 73 1072 1072 HOH HOH . I 7 HOH A 74 1073 1073 HOH HOH . I 7 HOH A 75 1074 1074 HOH HOH . I 7 HOH A 76 1075 1075 HOH HOH . I 7 HOH A 77 1076 1076 HOH HOH . I 7 HOH A 78 1077 1077 HOH HOH . I 7 HOH A 79 1078 1078 HOH HOH . I 7 HOH A 80 1079 1079 HOH HOH . I 7 HOH A 81 1080 1080 HOH HOH . I 7 HOH A 82 1081 1081 HOH HOH . I 7 HOH A 83 1082 1082 HOH HOH . I 7 HOH A 84 1083 1083 HOH HOH . I 7 HOH A 85 1084 1084 HOH HOH . I 7 HOH A 86 1085 1085 HOH HOH . I 7 HOH A 87 1086 1086 HOH HOH . I 7 HOH A 88 1087 1087 HOH HOH . I 7 HOH A 89 1088 1088 HOH HOH . I 7 HOH A 90 1089 1089 HOH HOH . I 7 HOH A 91 1090 1090 HOH HOH . I 7 HOH A 92 1091 1091 HOH HOH . I 7 HOH A 93 1092 1092 HOH HOH . I 7 HOH A 94 1093 1093 HOH HOH . I 7 HOH A 95 1094 1094 HOH HOH . I 7 HOH A 96 1095 1095 HOH HOH . I 7 HOH A 97 1096 1096 HOH HOH . I 7 HOH A 98 1097 1097 HOH HOH . I 7 HOH A 99 1098 1098 HOH HOH . I 7 HOH A 100 1099 1099 HOH HOH . I 7 HOH A 101 1100 1100 HOH HOH . I 7 HOH A 102 1101 1101 HOH HOH . I 7 HOH A 103 1102 1102 HOH HOH . I 7 HOH A 104 1103 1103 HOH HOH . I 7 HOH A 105 1104 1104 HOH HOH . I 7 HOH A 106 1105 1105 HOH HOH . I 7 HOH A 107 1106 1106 HOH HOH . I 7 HOH A 108 1107 1107 HOH HOH . I 7 HOH A 109 1108 1108 HOH HOH . I 7 HOH A 110 1109 1109 HOH HOH . I 7 HOH A 111 1110 1110 HOH HOH . I 7 HOH A 112 1111 1111 HOH HOH . I 7 HOH A 113 1112 1112 HOH HOH . I 7 HOH A 114 1113 1113 HOH HOH . I 7 HOH A 115 1114 1114 HOH HOH . I 7 HOH A 116 1115 1115 HOH HOH . I 7 HOH A 117 1116 1116 HOH HOH . I 7 HOH A 118 1117 1117 HOH HOH . I 7 HOH A 119 1118 1118 HOH HOH . I 7 HOH A 120 1119 1119 HOH HOH . I 7 HOH A 121 1120 1120 HOH HOH . I 7 HOH A 122 1121 1121 HOH HOH . I 7 HOH A 123 1122 1122 HOH HOH . I 7 HOH A 124 1123 1123 HOH HOH . I 7 HOH A 125 1124 1124 HOH HOH . I 7 HOH A 126 1125 1125 HOH HOH . I 7 HOH A 127 1126 1126 HOH HOH . I 7 HOH A 128 1127 1127 HOH HOH . I 7 HOH A 129 1128 1128 HOH HOH . I 7 HOH A 130 1129 1129 HOH HOH . I 7 HOH A 131 1130 1130 HOH HOH . I 7 HOH A 132 1131 1131 HOH HOH . I 7 HOH A 133 1132 1132 HOH HOH . I 7 HOH A 134 1133 1133 HOH HOH . I 7 HOH A 135 1134 1134 HOH HOH . I 7 HOH A 136 1135 1135 HOH HOH . I 7 HOH A 137 1136 1136 HOH HOH . I 7 HOH A 138 1137 1137 HOH HOH . I 7 HOH A 139 1138 1138 HOH HOH . I 7 HOH A 140 1139 1139 HOH HOH . I 7 HOH A 141 1140 1140 HOH HOH . I 7 HOH A 142 1141 1141 HOH HOH . I 7 HOH A 143 1142 1142 HOH HOH . I 7 HOH A 144 1143 1143 HOH HOH . I 7 HOH A 145 1144 1144 HOH HOH . I 7 HOH A 146 1145 1145 HOH HOH . I 7 HOH A 147 1146 1146 HOH HOH . I 7 HOH A 148 1147 1147 HOH HOH . I 7 HOH A 149 1148 1148 HOH HOH . I 7 HOH A 150 1149 1149 HOH HOH . I 7 HOH A 151 1150 1150 HOH HOH . I 7 HOH A 152 1151 1151 HOH HOH . I 7 HOH A 153 1152 1152 HOH HOH . I 7 HOH A 154 1153 1153 HOH HOH . I 7 HOH A 155 1154 1154 HOH HOH . I 7 HOH A 156 1155 1155 HOH HOH . I 7 HOH A 157 1156 1156 HOH HOH . I 7 HOH A 158 1157 1157 HOH HOH . I 7 HOH A 159 1158 1158 HOH HOH . I 7 HOH A 160 1159 1159 HOH HOH . I 7 HOH A 161 1160 1160 HOH HOH . I 7 HOH A 162 1161 1161 HOH HOH . I 7 HOH A 163 1162 1162 HOH HOH . I 7 HOH A 164 1163 1163 HOH HOH . I 7 HOH A 165 1164 1164 HOH HOH . I 7 HOH A 166 1165 1165 HOH HOH . I 7 HOH A 167 1166 1166 HOH HOH . I 7 HOH A 168 1167 1167 HOH HOH . I 7 HOH A 169 1168 1168 HOH HOH . I 7 HOH A 170 1169 1169 HOH HOH . I 7 HOH A 171 1170 1170 HOH HOH . I 7 HOH A 172 1171 1171 HOH HOH . I 7 HOH A 173 1172 1172 HOH HOH . I 7 HOH A 174 1173 1173 HOH HOH . I 7 HOH A 175 1174 1174 HOH HOH . I 7 HOH A 176 1175 1175 HOH HOH . I 7 HOH A 177 1176 1176 HOH HOH . I 7 HOH A 178 1177 1177 HOH HOH . I 7 HOH A 179 1178 1178 HOH HOH . I 7 HOH A 180 1179 1179 HOH HOH . I 7 HOH A 181 1180 1180 HOH HOH . I 7 HOH A 182 1181 1181 HOH HOH . I 7 HOH A 183 1182 1182 HOH HOH . I 7 HOH A 184 1183 1183 HOH HOH . I 7 HOH A 185 1184 1184 HOH HOH . I 7 HOH A 186 1185 1185 HOH HOH . I 7 HOH A 187 1186 1186 HOH HOH . I 7 HOH A 188 1187 1187 HOH HOH . I 7 HOH A 189 1188 1188 HOH HOH . I 7 HOH A 190 1189 1189 HOH HOH . I 7 HOH A 191 1190 1190 HOH HOH . I 7 HOH A 192 1191 1191 HOH HOH . I 7 HOH A 193 1192 1192 HOH HOH . I 7 HOH A 194 1193 1193 HOH HOH . I 7 HOH A 195 1194 1194 HOH HOH . I 7 HOH A 196 1195 1195 HOH HOH . I 7 HOH A 197 1196 1196 HOH HOH . I 7 HOH A 198 1197 1197 HOH HOH . I 7 HOH A 199 1198 1198 HOH HOH . I 7 HOH A 200 1199 1199 HOH HOH . I 7 HOH A 201 1201 1201 HOH HOH . I 7 HOH A 202 1202 1202 HOH HOH . I 7 HOH A 203 1203 1203 HOH HOH . I 7 HOH A 204 1204 1204 HOH HOH . I 7 HOH A 205 1205 1205 HOH HOH . I 7 HOH A 206 1206 1206 HOH HOH . I 7 HOH A 207 1207 1207 HOH HOH . I 7 HOH A 208 1208 1208 HOH HOH . I 7 HOH A 209 1209 1209 HOH HOH . I 7 HOH A 210 1210 1210 HOH HOH . I 7 HOH A 211 1211 1211 HOH HOH . I 7 HOH A 212 1212 1212 HOH HOH . I 7 HOH A 213 1214 1214 HOH HOH . I 7 HOH A 214 1215 1215 HOH HOH . I 7 HOH A 215 1216 1216 HOH HOH . I 7 HOH A 216 1217 1217 HOH HOH . I 7 HOH A 217 1218 1218 HOH HOH . I 7 HOH A 218 1219 1219 HOH HOH . I 7 HOH A 219 1220 1220 HOH HOH . I 7 HOH A 220 1221 1221 HOH HOH . I 7 HOH A 221 1222 1222 HOH HOH . I 7 HOH A 222 1223 1223 HOH HOH . I 7 HOH A 223 1224 1224 HOH HOH . I 7 HOH A 224 1225 1225 HOH HOH . I 7 HOH A 225 1226 1226 HOH HOH . I 7 HOH A 226 1227 1227 HOH HOH . I 7 HOH A 227 1228 1228 HOH HOH . I 7 HOH A 228 1229 1229 HOH HOH . I 7 HOH A 229 1230 1230 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 43.702 _atom_site.Cartn_y 43.723 _atom_site.Cartn_z 45.462 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #