data_3BL6 # _model_server_result.job_id vhHcMz9gQoN2QjlNe6KnOA _model_server_result.datetime_utc '2024-11-24 17:42:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bl6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":229}' # _entry.id 3BL6 # _exptl.entry_id 3BL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BL6 _cell.length_a 58.25 _cell.length_b 81.67 _cell.length_c 45.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 58.25 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id FMC _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMC doub 83 n y N1 C6 FMC sing 84 n y C2 N3 FMC sing 85 n y C2 H2 FMC sing 86 n n N3 C4 FMC doub 87 n y C4 C5 FMC sing 88 n y C4 C9 FMC sing 89 n y C5 C6 FMC doub 90 n y C5 N7 FMC sing 91 n y C6 N6 FMC sing 92 n n N6 HN6 FMC sing 93 n n N6 HN6A FMC sing 94 n n N7 N8 FMC sing 95 n y N7 HN7 FMC sing 96 n n N8 C9 FMC doub 97 n y C9 C1' FMC sing 98 n n C1' C2' FMC sing 99 n n C1' O4' FMC sing 100 n n C1' H1' FMC sing 101 n n C2' O2' FMC sing 102 n n C2' C3' FMC sing 103 n n C2' H2' FMC sing 104 n n O2' HO2' FMC sing 105 n n C3' O3' FMC sing 106 n n C3' C4' FMC sing 107 n n C3' H3' FMC sing 108 n n O3' HO3' FMC sing 109 n n C4' O4' FMC sing 110 n n C4' C5' FMC sing 111 n n C4' H4' FMC sing 112 n n C5' O5' FMC sing 113 n n C5' H5' FMC sing 114 n n C5' "H5'A" FMC sing 115 n n O5' HO5' FMC sing 116 n n # _atom_sites.entry_id 3BL6 _atom_sites.fract_transf_matrix[1][1] 0.017167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMC A 1 229 229 FMC FMC . C 3 HOH A 1 301 301 HOH WAT . C 3 HOH A 2 302 302 HOH WAT . C 3 HOH A 3 303 303 HOH WAT . C 3 HOH A 4 304 304 HOH WAT . C 3 HOH A 5 305 305 HOH WAT . C 3 HOH A 6 306 306 HOH WAT . C 3 HOH A 7 307 307 HOH WAT . C 3 HOH A 8 308 308 HOH WAT . C 3 HOH A 9 309 309 HOH WAT . C 3 HOH A 10 310 310 HOH WAT . C 3 HOH A 11 311 311 HOH WAT . C 3 HOH A 12 312 312 HOH WAT . C 3 HOH A 13 313 313 HOH WAT . C 3 HOH A 14 314 314 HOH WAT . C 3 HOH A 15 315 315 HOH WAT . C 3 HOH A 16 316 316 HOH WAT . C 3 HOH A 17 317 317 HOH WAT . C 3 HOH A 18 318 318 HOH WAT . C 3 HOH A 19 319 319 HOH WAT . C 3 HOH A 20 320 320 HOH WAT . C 3 HOH A 21 321 321 HOH WAT . C 3 HOH A 22 322 322 HOH WAT . C 3 HOH A 23 323 323 HOH WAT . C 3 HOH A 24 324 324 HOH WAT . C 3 HOH A 25 325 325 HOH WAT . C 3 HOH A 26 326 326 HOH WAT . C 3 HOH A 27 327 327 HOH WAT . C 3 HOH A 28 328 328 HOH WAT . C 3 HOH A 29 329 329 HOH WAT . C 3 HOH A 30 330 330 HOH WAT . C 3 HOH A 31 331 331 HOH WAT . C 3 HOH A 32 332 332 HOH WAT . C 3 HOH A 33 333 333 HOH WAT . C 3 HOH A 34 334 334 HOH WAT . C 3 HOH A 35 335 335 HOH WAT . C 3 HOH A 36 336 336 HOH WAT . C 3 HOH A 37 337 337 HOH WAT . C 3 HOH A 38 338 338 HOH WAT . C 3 HOH A 39 339 339 HOH WAT . C 3 HOH A 40 340 340 HOH WAT . C 3 HOH A 41 341 341 HOH WAT . C 3 HOH A 42 342 342 HOH WAT . C 3 HOH A 43 343 343 HOH WAT . C 3 HOH A 44 344 344 HOH WAT . C 3 HOH A 45 345 345 HOH WAT . C 3 HOH A 46 346 346 HOH WAT . C 3 HOH A 47 347 347 HOH WAT . C 3 HOH A 48 348 348 HOH WAT . C 3 HOH A 49 349 349 HOH WAT . C 3 HOH A 50 350 350 HOH WAT . C 3 HOH A 51 351 351 HOH WAT . C 3 HOH A 52 352 352 HOH WAT . C 3 HOH A 53 353 353 HOH WAT . C 3 HOH A 54 354 354 HOH WAT . C 3 HOH A 55 355 355 HOH WAT . C 3 HOH A 56 356 356 HOH WAT . C 3 HOH A 57 357 357 HOH WAT . C 3 HOH A 58 358 358 HOH WAT . C 3 HOH A 59 359 359 HOH WAT . C 3 HOH A 60 360 360 HOH WAT . C 3 HOH A 61 361 361 HOH WAT . C 3 HOH A 62 362 362 HOH WAT . C 3 HOH A 63 363 363 HOH WAT . C 3 HOH A 64 364 364 HOH WAT . C 3 HOH A 65 365 365 HOH WAT . C 3 HOH A 66 366 366 HOH WAT . C 3 HOH A 67 367 367 HOH WAT . C 3 HOH A 68 368 368 HOH WAT . C 3 HOH A 69 369 369 HOH WAT . C 3 HOH A 70 370 370 HOH WAT . C 3 HOH A 71 371 371 HOH WAT . C 3 HOH A 72 372 372 HOH WAT . C 3 HOH A 73 373 373 HOH WAT . C 3 HOH A 74 374 374 HOH WAT . C 3 HOH A 75 375 375 HOH WAT . C 3 HOH A 76 376 376 HOH WAT . C 3 HOH A 77 377 377 HOH WAT . C 3 HOH A 78 378 378 HOH WAT . C 3 HOH A 79 379 379 HOH WAT . C 3 HOH A 80 380 380 HOH WAT . C 3 HOH A 81 381 381 HOH WAT . C 3 HOH A 82 382 382 HOH WAT . C 3 HOH A 83 383 383 HOH WAT . C 3 HOH A 84 384 384 HOH WAT . C 3 HOH A 85 385 385 HOH WAT . C 3 HOH A 86 386 386 HOH WAT . C 3 HOH A 87 387 387 HOH WAT . C 3 HOH A 88 388 388 HOH WAT . C 3 HOH A 89 389 389 HOH WAT . C 3 HOH A 90 390 390 HOH WAT . C 3 HOH A 91 391 391 HOH WAT . C 3 HOH A 92 392 392 HOH WAT . C 3 HOH A 93 393 393 HOH WAT . C 3 HOH A 94 394 394 HOH WAT . C 3 HOH A 95 395 395 HOH WAT . C 3 HOH A 96 396 396 HOH WAT . C 3 HOH A 97 397 397 HOH WAT . C 3 HOH A 98 398 398 HOH WAT . C 3 HOH A 99 399 399 HOH WAT . C 3 HOH A 100 400 400 HOH WAT . C 3 HOH A 101 401 401 HOH WAT . C 3 HOH A 102 402 402 HOH WAT . C 3 HOH A 103 403 403 HOH WAT . C 3 HOH A 104 404 404 HOH WAT . C 3 HOH A 105 405 405 HOH WAT . C 3 HOH A 106 406 406 HOH WAT . C 3 HOH A 107 407 407 HOH WAT . C 3 HOH A 108 408 408 HOH WAT . C 3 HOH A 109 409 409 HOH WAT . C 3 HOH A 110 410 410 HOH WAT . C 3 HOH A 111 411 411 HOH WAT . C 3 HOH A 112 412 412 HOH WAT . C 3 HOH A 113 413 413 HOH WAT . C 3 HOH A 114 414 414 HOH WAT . C 3 HOH A 115 415 415 HOH WAT . C 3 HOH A 116 416 416 HOH WAT . C 3 HOH A 117 417 417 HOH WAT . C 3 HOH A 118 418 418 HOH WAT . C 3 HOH A 119 419 419 HOH WAT . C 3 HOH A 120 420 420 HOH WAT . C 3 HOH A 121 421 421 HOH WAT . C 3 HOH A 122 422 422 HOH WAT . C 3 HOH A 123 424 424 HOH WAT . C 3 HOH A 124 425 425 HOH WAT . C 3 HOH A 125 426 426 HOH WAT . C 3 HOH A 126 427 427 HOH WAT . C 3 HOH A 127 428 428 HOH WAT . C 3 HOH A 128 429 429 HOH WAT . C 3 HOH A 129 430 430 HOH WAT . C 3 HOH A 130 431 431 HOH WAT . C 3 HOH A 131 432 432 HOH WAT . C 3 HOH A 132 433 433 HOH WAT . C 3 HOH A 133 434 434 HOH WAT . C 3 HOH A 134 435 435 HOH WAT . C 3 HOH A 135 436 436 HOH WAT . C 3 HOH A 136 437 437 HOH WAT . C 3 HOH A 137 438 438 HOH WAT . C 3 HOH A 138 439 439 HOH WAT . C 3 HOH A 139 440 440 HOH WAT . C 3 HOH A 140 441 441 HOH WAT . C 3 HOH A 141 442 442 HOH WAT . C 3 HOH A 142 443 443 HOH WAT . C 3 HOH A 143 444 444 HOH WAT . C 3 HOH A 144 445 445 HOH WAT . C 3 HOH A 145 446 446 HOH WAT . C 3 HOH A 146 447 447 HOH WAT . C 3 HOH A 147 449 449 HOH WAT . C 3 HOH A 148 450 450 HOH WAT . C 3 HOH A 149 451 451 HOH WAT . C 3 HOH A 150 452 452 HOH WAT . C 3 HOH A 151 453 453 HOH WAT . C 3 HOH A 152 454 454 HOH WAT . C 3 HOH A 153 455 455 HOH WAT . C 3 HOH A 154 456 456 HOH WAT . C 3 HOH A 155 457 457 HOH WAT . C 3 HOH A 156 458 458 HOH WAT . C 3 HOH A 157 459 459 HOH WAT . C 3 HOH A 158 460 460 HOH WAT . C 3 HOH A 159 461 461 HOH WAT . C 3 HOH A 160 462 462 HOH WAT . C 3 HOH A 161 463 463 HOH WAT . C 3 HOH A 162 464 464 HOH WAT . C 3 HOH A 163 465 465 HOH WAT . C 3 HOH A 164 466 466 HOH WAT . C 3 HOH A 165 467 467 HOH WAT . C 3 HOH A 166 468 468 HOH WAT . C 3 HOH A 167 469 469 HOH WAT . C 3 HOH A 168 470 470 HOH WAT . C 3 HOH A 169 471 471 HOH WAT . C 3 HOH A 170 472 472 HOH WAT . C 3 HOH A 171 473 473 HOH WAT . C 3 HOH A 172 474 474 HOH WAT . C 3 HOH A 173 475 475 HOH WAT . C 3 HOH A 174 476 476 HOH WAT . C 3 HOH A 175 477 477 HOH WAT . C 3 HOH A 176 478 478 HOH WAT . C 3 HOH A 177 479 479 HOH WAT . C 3 HOH A 178 480 480 HOH WAT . C 3 HOH A 179 481 481 HOH WAT . C 3 HOH A 180 482 482 HOH WAT . C 3 HOH A 181 483 483 HOH WAT . C 3 HOH A 182 484 484 HOH WAT . C 3 HOH A 183 485 485 HOH WAT . C 3 HOH A 184 486 486 HOH WAT . C 3 HOH A 185 487 487 HOH WAT . C 3 HOH A 186 488 488 HOH WAT . C 3 HOH A 187 489 489 HOH WAT . C 3 HOH A 188 490 490 HOH WAT . C 3 HOH A 189 491 491 HOH WAT . C 3 HOH A 190 492 492 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMC . . . B 2 16.907 -1.435 77.247 1 9.15 ? N1 FMC 229 A 1 HETATM 2 C C2 FMC . . . B 2 17.62 -1.136 78.377 1 6.63 ? C2 FMC 229 A 1 HETATM 3 N N3 FMC . . . B 2 17.096 -0.985 79.613 1 5.57 ? N3 FMC 229 A 1 HETATM 4 C C4 FMC . . . B 2 15.666 -1.173 79.672 1 8.02 ? C4 FMC 229 A 1 HETATM 5 C C5 FMC . . . B 2 14.876 -1.487 78.546 1 5.6 ? C5 FMC 229 A 1 HETATM 6 C C6 FMC . . . B 2 15.54 -1.621 77.26 1 7.73 ? C6 FMC 229 A 1 HETATM 7 N N6 FMC . . . B 2 14.882 -1.904 76.14 1 7.79 ? N6 FMC 229 A 1 HETATM 8 N N7 FMC . . . B 2 13.585 -1.592 78.96 1 8.49 ? N7 FMC 229 A 1 HETATM 9 N N8 FMC . . . B 2 13.499 -1.354 80.316 1 6.99 ? N8 FMC 229 A 1 HETATM 10 C C9 FMC . . . B 2 14.733 -1.097 80.777 1 8.17 ? C9 FMC 229 A 1 HETATM 11 C C1' FMC . . . B 2 15.036 -0.77 82.264 1 7.6 ? C1' FMC 229 A 1 HETATM 12 C C2' FMC . . . B 2 16.499 -0.533 82.762 1 7.92 ? C2' FMC 229 A 1 HETATM 13 O O2' FMC . . . B 2 17.049 -1.495 83.64 1 6.79 ? O2' FMC 229 A 1 HETATM 14 C C3' FMC . . . B 2 16.477 0.859 83.361 1 7.7 ? C3' FMC 229 A 1 HETATM 15 O O3' FMC . . . B 2 16.425 0.679 84.79 1 8.99 ? O3' FMC 229 A 1 HETATM 16 C C4' FMC . . . B 2 15.244 1.609 82.799 1 8.71 ? C4' FMC 229 A 1 HETATM 17 O O4' FMC . . . B 2 14.328 0.457 82.607 1 9.04 ? O4' FMC 229 A 1 HETATM 18 C C5' FMC . . . B 2 15.467 2.354 81.409 1 12.35 ? C5' FMC 229 A 1 HETATM 19 O O5' FMC . . . B 2 16.335 3.477 81.445 1 18.46 ? O5' FMC 229 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #