data_3BLE # _model_server_result.job_id khzn8Xg3qXPTWwz2O8dNvw _model_server_result.datetime_utc '2024-12-22 02:14:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ble # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 3BLE # _exptl.entry_id 3BLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BLE _cell.length_a 85.158 _cell.length_b 85.158 _cell.length_c 112.897 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 219 A HIS 207 1_555 B ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 A NE2 HIS 221 A HIS 209 1_555 B ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 C O9 MLI . A MLI 701 1_555 B ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 C O6 MLI . A MLI 701 1_555 B ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 224 n n C1 C3 MLI sing 225 n n C1 H11 MLI sing 226 n n C1 H12 MLI sing 227 n n C2 O6 MLI doub 228 n n C2 O7 MLI sing 229 n n C3 O8 MLI doub 230 n n C3 O9 MLI sing 231 n n # _atom_sites.entry_id 3BLE _atom_sites.fract_transf_matrix[1][1] 0.011743 _atom_sites.fract_transf_matrix[1][2] 0.00678 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1003 1003 ZN MN . C 3 MLI A 1 701 701 MLI MAL . D 4 HOH A 1 1004 1 HOH HOH . D 4 HOH A 2 1005 2 HOH HOH . D 4 HOH A 3 1006 3 HOH HOH . D 4 HOH A 4 1007 4 HOH HOH . D 4 HOH A 5 1008 5 HOH HOH . D 4 HOH A 6 1009 6 HOH HOH . D 4 HOH A 7 1010 7 HOH HOH . D 4 HOH A 8 1011 8 HOH HOH . D 4 HOH A 9 1012 9 HOH HOH . D 4 HOH A 10 1013 10 HOH HOH . D 4 HOH A 11 1014 11 HOH HOH . D 4 HOH A 12 1015 12 HOH HOH . D 4 HOH A 13 1016 13 HOH HOH . D 4 HOH A 14 1017 14 HOH HOH . D 4 HOH A 15 1018 15 HOH HOH . D 4 HOH A 16 1019 16 HOH HOH . D 4 HOH A 17 1020 17 HOH HOH . D 4 HOH A 18 1021 18 HOH HOH . D 4 HOH A 19 1022 19 HOH HOH . D 4 HOH A 20 1023 20 HOH HOH . D 4 HOH A 21 1024 21 HOH HOH . D 4 HOH A 22 1025 22 HOH HOH . D 4 HOH A 23 1026 23 HOH HOH . D 4 HOH A 24 1027 24 HOH HOH . D 4 HOH A 25 1028 25 HOH HOH . D 4 HOH A 26 1029 26 HOH HOH . D 4 HOH A 27 1030 27 HOH HOH . D 4 HOH A 28 1031 28 HOH HOH . D 4 HOH A 29 1032 29 HOH HOH . D 4 HOH A 30 1033 30 HOH HOH . D 4 HOH A 31 1034 31 HOH HOH . D 4 HOH A 32 1035 32 HOH HOH . D 4 HOH A 33 1036 33 HOH HOH . D 4 HOH A 34 1037 34 HOH HOH . D 4 HOH A 35 1038 35 HOH HOH . D 4 HOH A 36 1039 36 HOH HOH . D 4 HOH A 37 1040 37 HOH HOH . D 4 HOH A 38 1041 38 HOH HOH . D 4 HOH A 39 1042 39 HOH HOH . D 4 HOH A 40 1043 40 HOH HOH . D 4 HOH A 41 1044 41 HOH HOH . D 4 HOH A 42 1045 42 HOH HOH . D 4 HOH A 43 1046 43 HOH HOH . D 4 HOH A 44 1047 44 HOH HOH . D 4 HOH A 45 1048 45 HOH HOH . D 4 HOH A 46 1049 46 HOH HOH . D 4 HOH A 47 1050 47 HOH HOH . D 4 HOH A 48 1051 49 HOH HOH . D 4 HOH A 49 1052 50 HOH HOH . D 4 HOH A 50 1053 51 HOH HOH . D 4 HOH A 51 1054 52 HOH HOH . D 4 HOH A 52 1055 53 HOH HOH . D 4 HOH A 53 1056 54 HOH HOH . D 4 HOH A 54 1057 55 HOH HOH . D 4 HOH A 55 1058 56 HOH HOH . D 4 HOH A 56 1059 57 HOH HOH . D 4 HOH A 57 1060 58 HOH HOH . D 4 HOH A 58 1061 59 HOH HOH . D 4 HOH A 59 1062 60 HOH HOH . D 4 HOH A 60 1063 61 HOH HOH . D 4 HOH A 61 1064 62 HOH HOH . D 4 HOH A 62 1065 63 HOH HOH . D 4 HOH A 63 1066 64 HOH HOH . D 4 HOH A 64 1067 65 HOH HOH . D 4 HOH A 65 1068 66 HOH HOH . D 4 HOH A 66 1069 67 HOH HOH . D 4 HOH A 67 1070 68 HOH HOH . D 4 HOH A 68 1071 69 HOH HOH . D 4 HOH A 69 1072 70 HOH HOH . D 4 HOH A 70 1073 71 HOH HOH . D 4 HOH A 71 1074 72 HOH HOH . D 4 HOH A 72 1075 73 HOH HOH . D 4 HOH A 73 1076 74 HOH HOH . D 4 HOH A 74 1077 75 HOH HOH . D 4 HOH A 75 1078 76 HOH HOH . D 4 HOH A 76 1079 77 HOH HOH . D 4 HOH A 77 1080 78 HOH HOH . D 4 HOH A 78 1081 79 HOH HOH . D 4 HOH A 79 1082 80 HOH HOH . D 4 HOH A 80 1083 81 HOH HOH . D 4 HOH A 81 1084 82 HOH HOH . D 4 HOH A 82 1085 83 HOH HOH . D 4 HOH A 83 1086 84 HOH HOH . D 4 HOH A 84 1087 85 HOH HOH . D 4 HOH A 85 1088 86 HOH HOH . D 4 HOH A 86 1089 87 HOH HOH . D 4 HOH A 87 1090 88 HOH HOH . D 4 HOH A 88 1091 89 HOH HOH . D 4 HOH A 89 1092 90 HOH HOH . D 4 HOH A 90 1093 91 HOH HOH . D 4 HOH A 91 1094 92 HOH HOH . D 4 HOH A 92 1095 93 HOH HOH . D 4 HOH A 93 1096 94 HOH HOH . D 4 HOH A 94 1097 95 HOH HOH . D 4 HOH A 95 1098 96 HOH HOH . D 4 HOH A 96 1099 97 HOH HOH . D 4 HOH A 97 1100 98 HOH HOH . D 4 HOH A 98 1101 99 HOH HOH . D 4 HOH A 99 1102 100 HOH HOH . D 4 HOH A 100 1103 101 HOH HOH . D 4 HOH A 101 1104 102 HOH HOH . D 4 HOH A 102 1105 103 HOH HOH . D 4 HOH A 103 1106 104 HOH HOH . D 4 HOH A 104 1107 105 HOH HOH . D 4 HOH A 105 1108 106 HOH HOH . D 4 HOH A 106 1109 107 HOH HOH . D 4 HOH A 107 1110 108 HOH HOH . D 4 HOH A 108 1111 109 HOH HOH . D 4 HOH A 109 1112 110 HOH HOH . D 4 HOH A 110 1113 111 HOH HOH . D 4 HOH A 111 1114 112 HOH HOH . D 4 HOH A 112 1115 113 HOH HOH . D 4 HOH A 113 1116 114 HOH HOH . D 4 HOH A 114 1117 115 HOH HOH . D 4 HOH A 115 1118 116 HOH HOH . D 4 HOH A 116 1119 117 HOH HOH . D 4 HOH A 117 1120 118 HOH HOH . D 4 HOH A 118 1121 119 HOH HOH . D 4 HOH A 119 1122 120 HOH HOH . D 4 HOH A 120 1123 121 HOH HOH . D 4 HOH A 121 1124 122 HOH HOH . D 4 HOH A 122 1125 123 HOH HOH . D 4 HOH A 123 1126 124 HOH HOH . D 4 HOH A 124 1127 125 HOH HOH . D 4 HOH A 125 1128 126 HOH HOH . D 4 HOH A 126 1129 127 HOH HOH . D 4 HOH A 127 1130 128 HOH HOH . D 4 HOH A 128 1131 129 HOH HOH . D 4 HOH A 129 1132 130 HOH HOH . D 4 HOH A 130 1133 131 HOH HOH . D 4 HOH A 131 1134 132 HOH HOH . D 4 HOH A 132 1135 133 HOH HOH . D 4 HOH A 133 1136 134 HOH HOH . D 4 HOH A 134 1137 135 HOH HOH . D 4 HOH A 135 1138 136 HOH HOH . D 4 HOH A 136 1139 137 HOH HOH . D 4 HOH A 137 1140 138 HOH HOH . D 4 HOH A 138 1141 139 HOH HOH . D 4 HOH A 139 1142 140 HOH HOH . D 4 HOH A 140 1143 141 HOH HOH . D 4 HOH A 141 1144 142 HOH HOH . D 4 HOH A 142 1145 143 HOH HOH . D 4 HOH A 143 1146 144 HOH HOH . D 4 HOH A 144 1147 145 HOH HOH . D 4 HOH A 145 1148 146 HOH HOH . D 4 HOH A 146 1149 147 HOH HOH . D 4 HOH A 147 1150 148 HOH HOH . D 4 HOH A 148 1151 149 HOH HOH . D 4 HOH A 149 1152 150 HOH HOH . D 4 HOH A 150 1153 151 HOH HOH . D 4 HOH A 151 1154 152 HOH HOH . D 4 HOH A 152 1155 153 HOH HOH . D 4 HOH A 153 1156 154 HOH HOH . D 4 HOH A 154 1157 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . C 3 27.308 12.671 8.984 1 37.34 ? C1 MLI 701 A 1 HETATM 2 C C2 MLI . . . C 3 28.1 13.945 8.681 1 37.81 ? C2 MLI 701 A 1 HETATM 3 C C3 MLI . . . C 3 26.743 12.097 7.682 1 38.23 ? C3 MLI 701 A 1 HETATM 4 O O6 MLI . . . C 3 27.442 14.977 8.437 1 36.93 ? O6 MLI 701 A 1 HETATM 5 O O7 MLI . . . C 3 29.348 13.86 8.704 1 36.66 ? O7 MLI 701 A 1 HETATM 6 O O8 MLI . . . C 3 26.895 10.873 7.487 1 40.32 ? O8 MLI 701 A 1 HETATM 7 O O9 MLI . . . C 3 26.17 12.896 6.91 1 39.36 ? O9 MLI 701 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #