data_3BLF
#
_model_server_result.job_id            PyhIc31ibkjZ5x9KjPtWhg 
_model_server_result.datetime_utc      '2024-10-19 23:41:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3blf 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1004}' 
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_entry.id    3BLF 
#
_exptl.entry_id    3BLF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              88.062 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYRUVIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3BLF 
_cell.length_a            85.137 
_cell.length_b            85.137 
_cell.length_c            116.06 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3BLF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 147.46161 77.373333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 219 A HIS 207 1_555 B ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc2 A NE2 HIS 221 A HIS 209 1_555 B ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc3 B ZN ZN . A ZN 1003 1_555 C O PYR . A PYR 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc4 B ZN ZN . A ZN 1003 1_555 C O3 PYR . A PYR 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc5 B ZN ZN . A ZN 1003 1_555 D O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
#
_chem_comp.formula           'C3 H4 O3' 
_chem_comp.formula_weight    88.062 
_chem_comp.id                PYR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYRUVIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O PYR doub 264 n n 
C OXT PYR sing 265 n n 
C CA PYR sing 266 n n 
OXT HXT PYR sing 267 n n 
CA O3 PYR doub 268 n n 
CA CB PYR sing 269 n n 
CB HB1 PYR sing 270 n n 
CB HB2 PYR sing 271 n n 
CB HB3 PYR sing 272 n n 
#
_atom_sites.entry_id                     3BLF 
_atom_sites.fract_transf_matrix[1][1]    0.011746 
_atom_sites.fract_transf_matrix[1][2]    0.006781 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013563 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008616 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1003 1003 ZN ZN . 
C 3 PYR A 1 1004 1 PYR PYR . 
D 4 HOH A 1 1005 32 HOH HOH . 
D 4 HOH A 2 1006 2 HOH HOH . 
D 4 HOH A 3 1007 15 HOH HOH . 
D 4 HOH A 4 1008 31 HOH HOH . 
D 4 HOH A 5 1009 13 HOH HOH . 
D 4 HOH A 6 1010 65 HOH HOH . 
D 4 HOH A 7 1011 16 HOH HOH . 
D 4 HOH A 8 1012 17 HOH HOH . 
D 4 HOH A 9 1013 19 HOH HOH . 
D 4 HOH A 10 1014 12 HOH HOH . 
D 4 HOH A 11 1015 42 HOH HOH . 
D 4 HOH A 12 1016 43 HOH HOH . 
D 4 HOH A 13 1017 106 HOH HOH . 
D 4 HOH A 14 1018 63 HOH HOH . 
D 4 HOH A 15 1019 8 HOH HOH . 
D 4 HOH A 16 1020 27 HOH HOH . 
D 4 HOH A 17 1021 77 HOH HOH . 
D 4 HOH A 18 1022 69 HOH HOH . 
D 4 HOH A 19 1023 61 HOH HOH . 
D 4 HOH A 20 1024 134 HOH HOH . 
D 4 HOH A 21 1025 45 HOH HOH . 
D 4 HOH A 22 1026 20 HOH HOH . 
D 4 HOH A 23 1027 59 HOH HOH . 
D 4 HOH A 24 1028 116 HOH HOH . 
D 4 HOH A 25 1029 37 HOH HOH . 
D 4 HOH A 26 1030 41 HOH HOH . 
D 4 HOH A 27 1031 3 HOH HOH . 
D 4 HOH A 28 1032 7 HOH HOH . 
D 4 HOH A 29 1033 33 HOH HOH . 
D 4 HOH A 30 1034 56 HOH HOH . 
D 4 HOH A 31 1035 137 HOH HOH . 
D 4 HOH A 32 1036 142 HOH HOH . 
D 4 HOH A 33 1037 150 HOH HOH . 
D 4 HOH A 34 1038 26 HOH HOH . 
D 4 HOH A 35 1039 107 HOH HOH . 
D 4 HOH A 36 1040 1 HOH HOH . 
D 4 HOH A 37 1041 6 HOH HOH . 
D 4 HOH A 38 1042 35 HOH HOH . 
D 4 HOH A 39 1043 14 HOH HOH . 
D 4 HOH A 40 1044 75 HOH HOH . 
D 4 HOH A 41 1045 10 HOH HOH . 
D 4 HOH A 42 1046 51 HOH HOH . 
D 4 HOH A 43 1047 53 HOH HOH . 
D 4 HOH A 44 1048 54 HOH HOH . 
D 4 HOH A 45 1049 11 HOH HOH . 
D 4 HOH A 46 1050 49 HOH HOH . 
D 4 HOH A 47 1051 9 HOH HOH . 
D 4 HOH A 48 1052 29 HOH HOH . 
D 4 HOH A 49 1053 4 HOH HOH . 
D 4 HOH A 50 1054 18 HOH HOH . 
D 4 HOH A 51 1055 55 HOH HOH . 
D 4 HOH A 52 1056 60 HOH HOH . 
D 4 HOH A 53 1057 57 HOH HOH . 
D 4 HOH A 54 1058 105 HOH HOH . 
D 4 HOH A 55 1059 50 HOH HOH . 
D 4 HOH A 56 1060 124 HOH HOH . 
D 4 HOH A 57 1061 58 HOH HOH . 
D 4 HOH A 58 1062 30 HOH HOH . 
D 4 HOH A 59 1063 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C PYR . . . C 3 18.238 56.747 30.893 1 58.02 ? C PYR 1004 A 1 
HETATM 2 O O PYR . . . C 3 17.829 57.552 31.757 1 54.57 ? O PYR 1004 A 1 
HETATM 3 O OXT PYR . . . C 3 19.223 55.992 31.047 1 59.46 ? OXT PYR 1004 A 1 
HETATM 4 C CA PYR . . . C 3 17.484 56.664 29.564 1 57.56 ? CA PYR 1004 A 1 
HETATM 5 O O3 PYR . . . C 3 16.423 57.267 29.415 1 56.6 ? O3 PYR 1004 A 1 
HETATM 6 C CB PYR . . . C 3 17.995 55.894 28.526 1 56.92 ? CB PYR 1004 A 1 
#
_model_server_stats.io_time_ms              118 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#