data_3BLI # _model_server_result.job_id WSCCex9r9UcjoerS_Ks1_A _model_server_result.datetime_utc '2024-12-21 15:12:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bli # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1004}' # _entry.id 3BLI # _exptl.entry_id 3BLI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BLI _cell.length_a 84.99 _cell.length_b 84.99 _cell.length_c 115.73 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 38.576667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 29 A ASP 17 1_555 B ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 B ZN ZN . A ZN 1003 1_555 D OXT PYR . A PYR 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 B ZN ZN . A ZN 1003 1_555 D O3 PYR . A PYR 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 3BLI _atom_sites.fract_transf_matrix[1][1] 0.011766 _atom_sites.fract_transf_matrix[1][2] 0.006793 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1003 1003 ZN MN . C 3 ACO A 1 1004 1 ACO ACO . D 4 PYR A 1 1005 1 PYR PYR . E 5 HOH A 1 1006 1 HOH HOH . E 5 HOH A 2 1007 2 HOH HOH . E 5 HOH A 3 1008 3 HOH HOH . E 5 HOH A 4 1009 4 HOH HOH . E 5 HOH A 5 1010 5 HOH HOH . E 5 HOH A 6 1011 6 HOH HOH . E 5 HOH A 7 1012 7 HOH HOH . E 5 HOH A 8 1013 8 HOH HOH . E 5 HOH A 9 1014 9 HOH HOH . E 5 HOH A 10 1015 10 HOH HOH . E 5 HOH A 11 1016 11 HOH HOH . E 5 HOH A 12 1017 12 HOH HOH . E 5 HOH A 13 1018 13 HOH HOH . E 5 HOH A 14 1019 14 HOH HOH . E 5 HOH A 15 1020 15 HOH HOH . E 5 HOH A 16 1021 16 HOH HOH . E 5 HOH A 17 1022 17 HOH HOH . E 5 HOH A 18 1023 18 HOH HOH . E 5 HOH A 19 1024 19 HOH HOH . E 5 HOH A 20 1025 20 HOH HOH . E 5 HOH A 21 1026 21 HOH HOH . E 5 HOH A 22 1027 22 HOH HOH . E 5 HOH A 23 1028 23 HOH HOH . E 5 HOH A 24 1029 24 HOH HOH . E 5 HOH A 25 1030 25 HOH HOH . E 5 HOH A 26 1031 26 HOH HOH . E 5 HOH A 27 1032 27 HOH HOH . E 5 HOH A 28 1033 28 HOH HOH . E 5 HOH A 29 1034 29 HOH HOH . E 5 HOH A 30 1035 30 HOH HOH . E 5 HOH A 31 1036 31 HOH HOH . E 5 HOH A 32 1037 32 HOH HOH . E 5 HOH A 33 1038 33 HOH HOH . E 5 HOH A 34 1039 34 HOH HOH . E 5 HOH A 35 1040 35 HOH HOH . E 5 HOH A 36 1041 36 HOH HOH . E 5 HOH A 37 1042 37 HOH HOH . E 5 HOH A 38 1043 38 HOH HOH . E 5 HOH A 39 1044 39 HOH HOH . E 5 HOH A 40 1045 40 HOH HOH . E 5 HOH A 41 1046 41 HOH HOH . E 5 HOH A 42 1047 42 HOH HOH . E 5 HOH A 43 1048 43 HOH HOH . E 5 HOH A 44 1049 44 HOH HOH . E 5 HOH A 45 1050 45 HOH HOH . E 5 HOH A 46 1051 46 HOH HOH . E 5 HOH A 47 1052 47 HOH HOH . E 5 HOH A 48 1053 48 HOH HOH . E 5 HOH A 49 1054 49 HOH HOH . E 5 HOH A 50 1055 50 HOH HOH . E 5 HOH A 51 1056 51 HOH HOH . E 5 HOH A 52 1057 52 HOH HOH . E 5 HOH A 53 1058 53 HOH HOH . E 5 HOH A 54 1059 54 HOH HOH . E 5 HOH A 55 1060 55 HOH HOH . E 5 HOH A 56 1061 56 HOH HOH . E 5 HOH A 57 1062 57 HOH HOH . E 5 HOH A 58 1063 58 HOH HOH . E 5 HOH A 59 1064 59 HOH HOH . E 5 HOH A 60 1065 60 HOH HOH . E 5 HOH A 61 1066 61 HOH HOH . E 5 HOH A 62 1067 62 HOH HOH . E 5 HOH A 63 1068 63 HOH HOH . E 5 HOH A 64 1069 64 HOH HOH . E 5 HOH A 65 1070 65 HOH HOH . E 5 HOH A 66 1071 66 HOH HOH . E 5 HOH A 67 1072 67 HOH HOH . E 5 HOH A 68 1073 68 HOH HOH . E 5 HOH A 69 1074 69 HOH HOH . E 5 HOH A 70 1075 70 HOH HOH . E 5 HOH A 71 1076 71 HOH HOH . E 5 HOH A 72 1077 72 HOH HOH . E 5 HOH A 73 1078 73 HOH HOH . E 5 HOH A 74 1079 74 HOH HOH . E 5 HOH A 75 1080 75 HOH HOH . E 5 HOH A 76 1081 76 HOH HOH . E 5 HOH A 77 1082 77 HOH HOH . E 5 HOH A 78 1083 78 HOH HOH . E 5 HOH A 79 1084 79 HOH HOH . E 5 HOH A 80 1085 80 HOH HOH . E 5 HOH A 81 1086 81 HOH HOH . E 5 HOH A 82 1087 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . C 3 41.122 -8.596 7.151 1 99.46 ? N1A ACO 1004 A 1 HETATM 2 C C2A ACO . . . C 3 41.527 -9.775 6.717 1 99.59 ? C2A ACO 1004 A 1 HETATM 3 N N3A ACO . . . C 3 41.013 -10.908 7.176 1 99.88 ? N3A ACO 1004 A 1 HETATM 4 C C4A ACO . . . C 3 40.055 -10.889 8.11 1 100.11 ? C4A ACO 1004 A 1 HETATM 5 C C5A ACO . . . C 3 39.605 -9.668 8.598 1 99.76 ? C5A ACO 1004 A 1 HETATM 6 C C6A ACO . . . C 3 40.166 -8.504 8.091 1 99.57 ? C6A ACO 1004 A 1 HETATM 7 N N6A ACO . . . C 3 39.791 -7.315 8.557 1 98.44 ? N6A ACO 1004 A 1 HETATM 8 N N7A ACO . . . C 3 38.667 -9.929 9.507 1 99.52 ? N7A ACO 1004 A 1 HETATM 9 C C8A ACO . . . C 3 38.531 -11.252 9.594 1 100.04 ? C8A ACO 1004 A 1 HETATM 10 N N9A ACO . . . C 3 39.365 -11.841 8.738 1 100.59 ? N9A ACO 1004 A 1 HETATM 11 C C1B ACO . . . C 3 39.484 -13.297 8.499 1 101.42 ? C1B ACO 1004 A 1 HETATM 12 C C2B ACO . . . C 3 40.733 -13.872 9.165 1 102.3 ? C2B ACO 1004 A 1 HETATM 13 O O2B ACO . . . C 3 41.883 -13.464 8.419 1 100.96 ? O2B ACO 1004 A 1 HETATM 14 C C3B ACO . . . C 3 40.429 -15.345 8.892 1 103.67 ? C3B ACO 1004 A 1 HETATM 15 O O3B ACO . . . C 3 40.727 -15.606 7.516 1 105.87 ? O3B ACO 1004 A 1 HETATM 16 P P3B ACO . . . C 3 42.28 -15.66 7.085 1 107.52 ? P3B ACO 1004 A 1 HETATM 17 O O7A ACO . . . C 3 43.111 -15.61 8.468 1 107.33 ? O7A ACO 1004 A 1 HETATM 18 O O8A ACO . . . C 3 42.515 -17.126 6.45 1 108.12 ? O8A ACO 1004 A 1 HETATM 19 O O9A ACO . . . C 3 42.661 -14.561 6.165 1 107.59 ? O9A ACO 1004 A 1 HETATM 20 C C4B ACO . . . C 3 38.914 -15.397 9.122 1 103.72 ? C4B ACO 1004 A 1 HETATM 21 O O4B ACO . . . C 3 38.475 -14.029 9.211 1 102.24 ? O4B ACO 1004 A 1 HETATM 22 C C5B ACO . . . C 3 38.527 -16.167 10.389 1 105.2 ? C5B ACO 1004 A 1 HETATM 23 O O5B ACO . . . C 3 38.541 -17.584 10.173 1 106.58 ? O5B ACO 1004 A 1 HETATM 24 P P1A ACO . . . C 3 39.348 -18.521 11.21 1 107.61 ? P1A ACO 1004 A 1 HETATM 25 O O1A ACO . . . C 3 38.51 -18.803 12.401 1 107.52 ? O1A ACO 1004 A 1 HETATM 26 O O2A ACO . . . C 3 40.7 -17.95 11.426 1 107.33 ? O2A ACO 1004 A 1 HETATM 27 O O3A ACO . . . C 3 39.518 -19.907 10.403 1 107.34 ? O3A ACO 1004 A 1 HETATM 28 P P2A ACO . . . C 3 40.65 -20.913 10.958 1 107.62 ? P2A ACO 1004 A 1 HETATM 29 O O4A ACO . . . C 3 40.12 -21.619 12.151 1 106.74 ? O4A ACO 1004 A 1 HETATM 30 O O5A ACO . . . C 3 41.93 -20.171 11.072 1 106.71 ? O5A ACO 1004 A 1 HETATM 31 O O6A ACO . . . C 3 40.795 -21.989 9.761 1 106.61 ? O6A ACO 1004 A 1 HETATM 32 C CBP ACO . . . C 3 38.432 -22.568 9.52 1 105.38 ? CBP ACO 1004 A 1 HETATM 33 C CCP ACO . . . C 3 39.871 -23.077 9.646 1 106.74 ? CCP ACO 1004 A 1 HETATM 34 C CDP ACO . . . C 3 37.933 -22.04 10.868 1 105.23 ? CDP ACO 1004 A 1 HETATM 35 C CEP ACO . . . C 3 37.534 -23.72 9.058 1 104.91 ? CEP ACO 1004 A 1 HETATM 36 C CAP ACO . . . C 3 38.376 -21.462 8.463 1 104.98 ? CAP ACO 1004 A 1 HETATM 37 O OAP ACO . . . C 3 38.668 -22.025 7.18 1 102.86 ? OAP ACO 1004 A 1 HETATM 38 C C9P ACO . . . C 3 36.967 -20.861 8.454 1 105.08 ? C9P ACO 1004 A 1 HETATM 39 O O9P ACO . . . C 3 35.992 -21.525 8.102 1 105.04 ? O9P ACO 1004 A 1 HETATM 40 N N8P ACO . . . C 3 36.904 -19.599 8.875 1 104.15 ? N8P ACO 1004 A 1 HETATM 41 C C7P ACO . . . C 3 35.643 -18.847 8.96 1 102.78 ? C7P ACO 1004 A 1 HETATM 42 C C6P ACO . . . C 3 35.921 -17.385 8.604 1 100.21 ? C6P ACO 1004 A 1 HETATM 43 C C5P ACO . . . C 3 34.95 -16.445 9.324 1 98.26 ? C5P ACO 1004 A 1 HETATM 44 O O5P ACO . . . C 3 33.789 -16.309 8.943 1 96.99 ? O5P ACO 1004 A 1 HETATM 45 N N4P ACO . . . C 3 35.486 -15.829 10.376 1 98.13 ? N4P ACO 1004 A 1 HETATM 46 C C3P ACO . . . C 3 34.776 -14.864 11.23 1 97.31 ? C3P ACO 1004 A 1 HETATM 47 C C2P ACO . . . C 3 33.301 -14.687 10.863 1 97.8 ? C2P ACO 1004 A 1 HETATM 48 S S1P ACO . . . C 3 32.403 -13.902 12.253 1 98.79 ? S1P ACO 1004 A 1 HETATM 49 C C ACO . . . C 3 30.731 -14.243 11.857 1 97.44 ? C ACO 1004 A 1 HETATM 50 O O ACO . . . C 3 30.445 -15.053 10.976 1 97.02 ? O ACO 1004 A 1 HETATM 51 C CH3 ACO . . . C 3 29.641 -13.548 12.677 1 98.4 ? CH3 ACO 1004 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 51 #