data_3BLI
#
_model_server_result.job_id            GshSH7d6gxf-xEv0AGFiEg 
_model_server_result.datetime_utc      '2024-12-21 14:43:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bli 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1005}' 
#
_entry.id    3BLI 
#
_exptl.entry_id    3BLI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.062 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYRUVIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3BLI 
_cell.length_a            84.99 
_cell.length_b            84.99 
_cell.length_c            115.73 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BLI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 38.576667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 29 A ASP 17 1_555 B ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc2 B ZN ZN . A ZN 1003 1_555 D OXT PYR . A PYR 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc3 B ZN ZN . A ZN 1003 1_555 D O3 PYR . A PYR 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
#
_chem_comp.formula           'C3 H4 O3' 
_chem_comp.formula_weight    88.062 
_chem_comp.id                PYR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYRUVIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O PYR doub 355 n n 
C OXT PYR sing 356 n n 
C CA PYR sing 357 n n 
OXT HXT PYR sing 358 n n 
CA O3 PYR doub 359 n n 
CA CB PYR sing 360 n n 
CB HB1 PYR sing 361 n n 
CB HB2 PYR sing 362 n n 
CB HB3 PYR sing 363 n n 
#
_atom_sites.entry_id                     3BLI 
_atom_sites.fract_transf_matrix[1][1]    0.011766 
_atom_sites.fract_transf_matrix[1][2]    0.006793 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013586 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008641 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1003 1003 ZN MN . 
C 3 ACO A 1 1004 1 ACO ACO . 
D 4 PYR A 1 1005 1 PYR PYR . 
E 5 HOH A 1 1006 1 HOH HOH . 
E 5 HOH A 2 1007 2 HOH HOH . 
E 5 HOH A 3 1008 3 HOH HOH . 
E 5 HOH A 4 1009 4 HOH HOH . 
E 5 HOH A 5 1010 5 HOH HOH . 
E 5 HOH A 6 1011 6 HOH HOH . 
E 5 HOH A 7 1012 7 HOH HOH . 
E 5 HOH A 8 1013 8 HOH HOH . 
E 5 HOH A 9 1014 9 HOH HOH . 
E 5 HOH A 10 1015 10 HOH HOH . 
E 5 HOH A 11 1016 11 HOH HOH . 
E 5 HOH A 12 1017 12 HOH HOH . 
E 5 HOH A 13 1018 13 HOH HOH . 
E 5 HOH A 14 1019 14 HOH HOH . 
E 5 HOH A 15 1020 15 HOH HOH . 
E 5 HOH A 16 1021 16 HOH HOH . 
E 5 HOH A 17 1022 17 HOH HOH . 
E 5 HOH A 18 1023 18 HOH HOH . 
E 5 HOH A 19 1024 19 HOH HOH . 
E 5 HOH A 20 1025 20 HOH HOH . 
E 5 HOH A 21 1026 21 HOH HOH . 
E 5 HOH A 22 1027 22 HOH HOH . 
E 5 HOH A 23 1028 23 HOH HOH . 
E 5 HOH A 24 1029 24 HOH HOH . 
E 5 HOH A 25 1030 25 HOH HOH . 
E 5 HOH A 26 1031 26 HOH HOH . 
E 5 HOH A 27 1032 27 HOH HOH . 
E 5 HOH A 28 1033 28 HOH HOH . 
E 5 HOH A 29 1034 29 HOH HOH . 
E 5 HOH A 30 1035 30 HOH HOH . 
E 5 HOH A 31 1036 31 HOH HOH . 
E 5 HOH A 32 1037 32 HOH HOH . 
E 5 HOH A 33 1038 33 HOH HOH . 
E 5 HOH A 34 1039 34 HOH HOH . 
E 5 HOH A 35 1040 35 HOH HOH . 
E 5 HOH A 36 1041 36 HOH HOH . 
E 5 HOH A 37 1042 37 HOH HOH . 
E 5 HOH A 38 1043 38 HOH HOH . 
E 5 HOH A 39 1044 39 HOH HOH . 
E 5 HOH A 40 1045 40 HOH HOH . 
E 5 HOH A 41 1046 41 HOH HOH . 
E 5 HOH A 42 1047 42 HOH HOH . 
E 5 HOH A 43 1048 43 HOH HOH . 
E 5 HOH A 44 1049 44 HOH HOH . 
E 5 HOH A 45 1050 45 HOH HOH . 
E 5 HOH A 46 1051 46 HOH HOH . 
E 5 HOH A 47 1052 47 HOH HOH . 
E 5 HOH A 48 1053 48 HOH HOH . 
E 5 HOH A 49 1054 49 HOH HOH . 
E 5 HOH A 50 1055 50 HOH HOH . 
E 5 HOH A 51 1056 51 HOH HOH . 
E 5 HOH A 52 1057 52 HOH HOH . 
E 5 HOH A 53 1058 53 HOH HOH . 
E 5 HOH A 54 1059 54 HOH HOH . 
E 5 HOH A 55 1060 55 HOH HOH . 
E 5 HOH A 56 1061 56 HOH HOH . 
E 5 HOH A 57 1062 57 HOH HOH . 
E 5 HOH A 58 1063 58 HOH HOH . 
E 5 HOH A 59 1064 59 HOH HOH . 
E 5 HOH A 60 1065 60 HOH HOH . 
E 5 HOH A 61 1066 61 HOH HOH . 
E 5 HOH A 62 1067 62 HOH HOH . 
E 5 HOH A 63 1068 63 HOH HOH . 
E 5 HOH A 64 1069 64 HOH HOH . 
E 5 HOH A 65 1070 65 HOH HOH . 
E 5 HOH A 66 1071 66 HOH HOH . 
E 5 HOH A 67 1072 67 HOH HOH . 
E 5 HOH A 68 1073 68 HOH HOH . 
E 5 HOH A 69 1074 69 HOH HOH . 
E 5 HOH A 70 1075 70 HOH HOH . 
E 5 HOH A 71 1076 71 HOH HOH . 
E 5 HOH A 72 1077 72 HOH HOH . 
E 5 HOH A 73 1078 73 HOH HOH . 
E 5 HOH A 74 1079 74 HOH HOH . 
E 5 HOH A 75 1080 75 HOH HOH . 
E 5 HOH A 76 1081 76 HOH HOH . 
E 5 HOH A 77 1082 77 HOH HOH . 
E 5 HOH A 78 1083 78 HOH HOH . 
E 5 HOH A 79 1084 79 HOH HOH . 
E 5 HOH A 80 1085 80 HOH HOH . 
E 5 HOH A 81 1086 81 HOH HOH . 
E 5 HOH A 82 1087 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C PYR . . . D 4 26.72 -12.465 11.545 1 45.54 ? C PYR 1005 A 1 
HETATM 2 O O PYR . . . D 4 26.752 -11.218 11.632 1 48.02 ? O PYR 1005 A 1 
HETATM 3 O OXT PYR . . . D 4 26.181 -13.215 12.387 1 45.42 ? OXT PYR 1005 A 1 
HETATM 4 C CA PYR . . . D 4 27.401 -13.117 10.34 1 45.81 ? CA PYR 1005 A 1 
HETATM 5 O O3 PYR . . . D 4 27.525 -14.34 10.294 1 45.1 ? O3 PYR 1005 A 1 
HETATM 6 C CB PYR . . . D 4 27.897 -12.331 9.307 1 45.23 ? CB PYR 1005 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           39 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           1443 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#