data_3BLK # _model_server_result.job_id q28LRR0Ji4t4rNBk-xfB-w _model_server_result.datetime_utc '2024-11-24 19:54:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3blk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":497}' # _entry.id 3BLK # _exptl.entry_id 3BLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BLK _cell.length_a 52.282 _cell.length_b 75.046 _cell.length_c 135.013 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 AGL _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC B 503 GLC 2 n B AGL 2 B 2 AGL B 502 AGL 2 n C GLC 1 C 1 GLC B 506 GLC 2 n C AGL 2 C 2 AGL B 505 AGL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N TYR 2 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale2 F O4 HMC . A HMC 504 1_555 B C1 GLC . B GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale3 F C1 HMC . A HMC 504 1_555 C N4 AGL . C AGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B O4 GLC . B GLC 1 1_555 B C1 AGL . B AGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 C O4 GLC . C GLC 1 1_555 C C1 AGL . C AGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A O ARG 158 A ARG 158 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc3 A OD1 ASP 167 A ASP 167 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc4 A OD2 ASP 167 A ASP 167 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc5 A O HIS 201 A HIS 201 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc6 D CA CA . A CA 497 1_555 G O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc7 D CA CA . A CA 497 1_555 G O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc8 D CA CA . A CA 497 1_555 G O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BLK _atom_sites.fract_transf_matrix[1][1] 0.019127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 497 497 CA CA . E 4 CL A 1 498 498 CL CL . F 5 HMC A 1 504 504 HMC HMC . G 6 HOH A 1 507 2 HOH HOH . G 6 HOH A 2 508 4 HOH HOH . G 6 HOH A 3 509 7 HOH HOH . G 6 HOH A 4 510 3 HOH HOH . G 6 HOH A 5 511 6 HOH HOH . G 6 HOH A 6 512 15 HOH HOH . G 6 HOH A 7 513 51 HOH HOH . G 6 HOH A 8 514 35 HOH HOH . G 6 HOH A 9 515 10 HOH HOH . G 6 HOH A 10 516 5 HOH HOH . G 6 HOH A 11 517 20 HOH HOH . G 6 HOH A 12 518 56 HOH HOH . G 6 HOH A 13 519 25 HOH HOH . G 6 HOH A 14 520 12 HOH HOH . G 6 HOH A 15 521 81 HOH HOH . G 6 HOH A 16 522 47 HOH HOH . G 6 HOH A 17 523 50 HOH HOH . G 6 HOH A 18 524 9 HOH HOH . G 6 HOH A 19 525 45 HOH HOH . G 6 HOH A 20 526 34 HOH HOH . G 6 HOH A 21 527 43 HOH HOH . G 6 HOH A 22 528 52 HOH HOH . G 6 HOH A 23 529 22 HOH HOH . G 6 HOH A 24 530 26 HOH HOH . G 6 HOH A 25 531 38 HOH HOH . G 6 HOH A 26 532 13 HOH HOH . G 6 HOH A 27 533 59 HOH HOH . G 6 HOH A 28 534 71 HOH HOH . G 6 HOH A 29 535 36 HOH HOH . G 6 HOH A 30 536 1 HOH HOH . G 6 HOH A 31 537 65 HOH HOH . G 6 HOH A 32 538 16 HOH HOH . G 6 HOH A 33 539 19 HOH HOH . G 6 HOH A 34 540 41 HOH HOH . G 6 HOH A 35 541 37 HOH HOH . G 6 HOH A 36 542 17 HOH HOH . G 6 HOH A 37 543 23 HOH HOH . G 6 HOH A 38 544 8 HOH HOH . G 6 HOH A 39 545 90 HOH HOH . G 6 HOH A 40 546 58 HOH HOH . G 6 HOH A 41 547 18 HOH HOH . G 6 HOH A 42 548 60 HOH HOH . G 6 HOH A 43 549 11 HOH HOH . G 6 HOH A 44 550 21 HOH HOH . G 6 HOH A 45 551 83 HOH HOH . G 6 HOH A 46 552 24 HOH HOH . G 6 HOH A 47 553 124 HOH HOH . G 6 HOH A 48 554 31 HOH HOH . G 6 HOH A 49 555 30 HOH HOH . G 6 HOH A 50 556 88 HOH HOH . G 6 HOH A 51 557 74 HOH HOH . G 6 HOH A 52 558 14 HOH HOH . G 6 HOH A 53 559 27 HOH HOH . G 6 HOH A 54 560 32 HOH HOH . G 6 HOH A 55 561 44 HOH HOH . G 6 HOH A 56 562 95 HOH HOH . G 6 HOH A 57 563 152 HOH HOH . G 6 HOH A 58 564 49 HOH HOH . G 6 HOH A 59 565 33 HOH HOH . G 6 HOH A 60 566 53 HOH HOH . G 6 HOH A 61 567 61 HOH HOH . G 6 HOH A 62 568 97 HOH HOH . G 6 HOH A 63 569 91 HOH HOH . G 6 HOH A 64 570 93 HOH HOH . G 6 HOH A 65 571 115 HOH HOH . G 6 HOH A 66 572 69 HOH HOH . G 6 HOH A 67 573 57 HOH HOH . G 6 HOH A 68 574 40 HOH HOH . G 6 HOH A 69 575 70 HOH HOH . G 6 HOH A 70 576 156 HOH HOH . G 6 HOH A 71 577 89 HOH HOH . G 6 HOH A 72 578 117 HOH HOH . G 6 HOH A 73 579 39 HOH HOH . G 6 HOH A 74 580 80 HOH HOH . G 6 HOH A 75 581 55 HOH HOH . G 6 HOH A 76 582 76 HOH HOH . G 6 HOH A 77 583 129 HOH HOH . G 6 HOH A 78 584 138 HOH HOH . G 6 HOH A 79 585 113 HOH HOH . G 6 HOH A 80 586 96 HOH HOH . G 6 HOH A 81 587 63 HOH HOH . G 6 HOH A 82 588 121 HOH HOH . G 6 HOH A 83 589 151 HOH HOH . G 6 HOH A 84 590 99 HOH HOH . G 6 HOH A 85 591 110 HOH HOH . G 6 HOH A 86 592 135 HOH HOH . G 6 HOH A 87 593 153 HOH HOH . G 6 HOH A 88 594 28 HOH HOH . G 6 HOH A 89 595 86 HOH HOH . G 6 HOH A 90 596 75 HOH HOH . G 6 HOH A 91 597 64 HOH HOH . G 6 HOH A 92 598 73 HOH HOH . G 6 HOH A 93 599 154 HOH HOH . G 6 HOH A 94 600 84 HOH HOH . G 6 HOH A 95 601 42 HOH HOH . G 6 HOH A 96 602 92 HOH HOH . G 6 HOH A 97 603 130 HOH HOH . G 6 HOH A 98 604 142 HOH HOH . G 6 HOH A 99 605 54 HOH HOH . G 6 HOH A 100 606 66 HOH HOH . G 6 HOH A 101 607 120 HOH HOH . G 6 HOH A 102 608 208 HOH HOH . G 6 HOH A 103 609 72 HOH HOH . G 6 HOH A 104 610 105 HOH HOH . G 6 HOH A 105 611 136 HOH HOH . G 6 HOH A 106 612 222 HOH HOH . G 6 HOH A 107 613 148 HOH HOH . G 6 HOH A 108 614 48 HOH HOH . G 6 HOH A 109 615 104 HOH HOH . G 6 HOH A 110 616 112 HOH HOH . G 6 HOH A 111 617 132 HOH HOH . G 6 HOH A 112 618 29 HOH HOH . G 6 HOH A 113 619 205 HOH HOH . G 6 HOH A 114 620 147 HOH HOH . G 6 HOH A 115 621 131 HOH HOH . G 6 HOH A 116 622 79 HOH HOH . G 6 HOH A 117 623 94 HOH HOH . G 6 HOH A 118 624 123 HOH HOH . G 6 HOH A 119 625 106 HOH HOH . G 6 HOH A 120 626 212 HOH HOH . G 6 HOH A 121 627 87 HOH HOH . G 6 HOH A 122 628 178 HOH HOH . G 6 HOH A 123 629 118 HOH HOH . G 6 HOH A 124 630 46 HOH HOH . G 6 HOH A 125 631 62 HOH HOH . G 6 HOH A 126 632 68 HOH HOH . G 6 HOH A 127 633 103 HOH HOH . G 6 HOH A 128 634 107 HOH HOH . G 6 HOH A 129 635 67 HOH HOH . G 6 HOH A 130 636 139 HOH HOH . G 6 HOH A 131 637 128 HOH HOH . G 6 HOH A 132 638 146 HOH HOH . G 6 HOH A 133 639 150 HOH HOH . G 6 HOH A 134 640 122 HOH HOH . G 6 HOH A 135 641 127 HOH HOH . G 6 HOH A 136 642 109 HOH HOH . G 6 HOH A 137 643 85 HOH HOH . G 6 HOH A 138 644 188 HOH HOH . G 6 HOH A 139 645 100 HOH HOH . G 6 HOH A 140 646 137 HOH HOH . G 6 HOH A 141 647 161 HOH HOH . G 6 HOH A 142 648 143 HOH HOH . G 6 HOH A 143 649 125 HOH HOH . G 6 HOH A 144 650 145 HOH HOH . G 6 HOH A 145 651 160 HOH HOH . G 6 HOH A 146 652 158 HOH HOH . G 6 HOH A 147 653 102 HOH HOH . G 6 HOH A 148 654 155 HOH HOH . G 6 HOH A 149 655 77 HOH HOH . G 6 HOH A 150 656 116 HOH HOH . G 6 HOH A 151 657 198 HOH HOH . G 6 HOH A 152 658 162 HOH HOH . G 6 HOH A 153 659 134 HOH HOH . G 6 HOH A 154 660 82 HOH HOH . G 6 HOH A 155 661 98 HOH HOH . G 6 HOH A 156 662 101 HOH HOH . G 6 HOH A 157 663 108 HOH HOH . G 6 HOH A 158 664 216 HOH HOH . G 6 HOH A 159 665 170 HOH HOH . G 6 HOH A 160 666 168 HOH HOH . G 6 HOH A 161 667 114 HOH HOH . G 6 HOH A 162 668 186 HOH HOH . G 6 HOH A 163 669 195 HOH HOH . G 6 HOH A 164 670 207 HOH HOH . G 6 HOH A 165 671 203 HOH HOH . G 6 HOH A 166 672 133 HOH HOH . G 6 HOH A 167 673 167 HOH HOH . G 6 HOH A 168 674 141 HOH HOH . G 6 HOH A 169 675 111 HOH HOH . G 6 HOH A 170 676 140 HOH HOH . G 6 HOH A 171 677 149 HOH HOH . G 6 HOH A 172 678 201 HOH HOH . G 6 HOH A 173 679 78 HOH HOH . G 6 HOH A 174 680 179 HOH HOH . G 6 HOH A 175 681 180 HOH HOH . G 6 HOH A 176 682 224 HOH HOH . G 6 HOH A 177 683 193 HOH HOH . G 6 HOH A 178 684 204 HOH HOH . G 6 HOH A 179 685 194 HOH HOH . G 6 HOH A 180 686 119 HOH HOH . G 6 HOH A 181 687 157 HOH HOH . G 6 HOH A 182 688 202 HOH HOH . G 6 HOH A 183 689 144 HOH HOH . G 6 HOH A 184 690 166 HOH HOH . G 6 HOH A 185 691 200 HOH HOH . G 6 HOH A 186 692 217 HOH HOH . G 6 HOH A 187 693 177 HOH HOH . G 6 HOH A 188 694 163 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 8.48 _atom_site.Cartn_y 38.507 _atom_site.Cartn_z 10.539 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 497 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #