data_3BLN # _model_server_result.job_id RPgWwVYVyE1pVdsGTi7Skw _model_server_result.datetime_utc '2024-11-13 12:08:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":147}' # _entry.id 3BLN # _exptl.entry_id 3BLN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BLN _cell.length_a 43.37 _cell.length_b 89.553 _cell.length_c 37.228 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BLN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.37 89.553 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C MSE 2 A MSE 1 1_555 A N LYS 3 A LYS 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.313 ? covale ? covale4 A C MSE 2 A MSE 1 1_555 A N LYS 3 A LYS 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C TYR 88 A TYR 87 1_555 A N MSE 89 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 89 A MSE 88 1_555 A N LEU 90 A LEU 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale7 A C SER 108 A SER 107 1_555 A N MSE 109 A MSE 108 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C SER 108 A SER 107 1_555 A N MSE 109 A MSE 108 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.321 ? covale ? covale9 A C MSE 109 A MSE 108 1_555 A N GLN 110 A GLN 109 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C MSE 109 A MSE 108 1_555 A N GLN 110 A GLN 109 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 258 n n C1 H1C1 MRD sing 259 n n C1 H1C2 MRD sing 260 n n C1 H1C3 MRD sing 261 n n C2 O2 MRD sing 262 n n C2 CM MRD sing 263 n n C2 C3 MRD sing 264 n n O2 H2 MRD sing 265 n n CM HMC1 MRD sing 266 n n CM HMC2 MRD sing 267 n n CM HMC3 MRD sing 268 n n C3 C4 MRD sing 269 n n C3 H3C1 MRD sing 270 n n C3 H3C2 MRD sing 271 n n C4 O4 MRD sing 272 n n C4 C5 MRD sing 273 n n C4 H4 MRD sing 274 n n O4 HA MRD sing 275 n n C5 H5C1 MRD sing 276 n n C5 H5C2 MRD sing 277 n n C5 H5C3 MRD sing 278 n n # _atom_sites.entry_id 3BLN _atom_sites.fract_transf_matrix[1][1] 0.023058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 143 1 ACT ACT . C 3 MRD A 1 145 3 MRD MRD . D 3 MRD A 1 146 4 MRD MRD . E 4 GOL A 1 144 2 GOL GOL . F 5 MPD A 1 147 5 MPD MPD . G 3 MRD A 1 147 5 MRD MRD . H 6 HOH A 1 148 6 HOH HOH . H 6 HOH A 2 149 7 HOH HOH . H 6 HOH A 3 150 8 HOH HOH . H 6 HOH A 4 151 9 HOH HOH . H 6 HOH A 5 152 10 HOH HOH . H 6 HOH A 6 153 11 HOH HOH . H 6 HOH A 7 154 12 HOH HOH . H 6 HOH A 8 155 13 HOH HOH . H 6 HOH A 9 156 14 HOH HOH . H 6 HOH A 10 157 15 HOH HOH . H 6 HOH A 11 158 16 HOH HOH . H 6 HOH A 12 159 17 HOH HOH . H 6 HOH A 13 160 18 HOH HOH . H 6 HOH A 14 161 19 HOH HOH . H 6 HOH A 15 162 20 HOH HOH . H 6 HOH A 16 163 21 HOH HOH . H 6 HOH A 17 164 22 HOH HOH . H 6 HOH A 18 165 23 HOH HOH . H 6 HOH A 19 166 24 HOH HOH . H 6 HOH A 20 167 25 HOH HOH . H 6 HOH A 21 168 26 HOH HOH . H 6 HOH A 22 169 27 HOH HOH . H 6 HOH A 23 170 28 HOH HOH . H 6 HOH A 24 171 29 HOH HOH . H 6 HOH A 25 172 30 HOH HOH . H 6 HOH A 26 173 31 HOH HOH . H 6 HOH A 27 174 32 HOH HOH . H 6 HOH A 28 175 33 HOH HOH . H 6 HOH A 29 176 34 HOH HOH . H 6 HOH A 30 177 35 HOH HOH . H 6 HOH A 31 178 36 HOH HOH . H 6 HOH A 32 179 37 HOH HOH . H 6 HOH A 33 180 38 HOH HOH . H 6 HOH A 34 181 39 HOH HOH . H 6 HOH A 35 182 40 HOH HOH . H 6 HOH A 36 183 41 HOH HOH . H 6 HOH A 37 184 42 HOH HOH . H 6 HOH A 38 185 43 HOH HOH . H 6 HOH A 39 186 44 HOH HOH . H 6 HOH A 40 187 45 HOH HOH . H 6 HOH A 41 188 46 HOH HOH . H 6 HOH A 42 189 47 HOH HOH . H 6 HOH A 43 190 48 HOH HOH . H 6 HOH A 44 191 49 HOH HOH . H 6 HOH A 45 192 50 HOH HOH . H 6 HOH A 46 193 51 HOH HOH . H 6 HOH A 47 194 52 HOH HOH . H 6 HOH A 48 195 53 HOH HOH . H 6 HOH A 49 196 54 HOH HOH . H 6 HOH A 50 197 55 HOH HOH . H 6 HOH A 51 198 56 HOH HOH . H 6 HOH A 52 199 57 HOH HOH . H 6 HOH A 53 200 58 HOH HOH . H 6 HOH A 54 201 59 HOH HOH . H 6 HOH A 55 202 60 HOH HOH . H 6 HOH A 56 203 61 HOH HOH . H 6 HOH A 57 204 62 HOH HOH . H 6 HOH A 58 205 63 HOH HOH . H 6 HOH A 59 206 64 HOH HOH . H 6 HOH A 60 207 65 HOH HOH . H 6 HOH A 61 208 66 HOH HOH . H 6 HOH A 62 209 67 HOH HOH . H 6 HOH A 63 210 68 HOH HOH . H 6 HOH A 64 211 69 HOH HOH . H 6 HOH A 65 212 70 HOH HOH . H 6 HOH A 66 213 71 HOH HOH . H 6 HOH A 67 214 72 HOH HOH . H 6 HOH A 68 215 73 HOH HOH . H 6 HOH A 69 216 74 HOH HOH . H 6 HOH A 70 217 75 HOH HOH . H 6 HOH A 71 218 76 HOH HOH . H 6 HOH A 72 219 77 HOH HOH . H 6 HOH A 73 220 78 HOH HOH . H 6 HOH A 74 221 79 HOH HOH . H 6 HOH A 75 222 80 HOH HOH . H 6 HOH A 76 223 81 HOH HOH . H 6 HOH A 77 224 82 HOH HOH . H 6 HOH A 78 225 83 HOH HOH . H 6 HOH A 79 226 84 HOH HOH . H 6 HOH A 80 227 85 HOH HOH . H 6 HOH A 81 228 86 HOH HOH . H 6 HOH A 82 229 87 HOH HOH . H 6 HOH A 83 230 88 HOH HOH . H 6 HOH A 84 231 89 HOH HOH . H 6 HOH A 85 232 90 HOH HOH . H 6 HOH A 86 233 91 HOH HOH . H 6 HOH A 87 234 92 HOH HOH . H 6 HOH A 88 235 93 HOH HOH . H 6 HOH A 89 236 94 HOH HOH . H 6 HOH A 90 237 95 HOH HOH . H 6 HOH A 91 238 96 HOH HOH . H 6 HOH A 92 239 97 HOH HOH . H 6 HOH A 93 240 98 HOH HOH . H 6 HOH A 94 241 99 HOH HOH . H 6 HOH A 95 242 100 HOH HOH . H 6 HOH A 96 243 101 HOH HOH . H 6 HOH A 97 244 102 HOH HOH . H 6 HOH A 98 245 103 HOH HOH . H 6 HOH A 99 246 104 HOH HOH . H 6 HOH A 100 247 105 HOH HOH . H 6 HOH A 101 248 106 HOH HOH . H 6 HOH A 102 249 107 HOH HOH . H 6 HOH A 103 250 108 HOH HOH . H 6 HOH A 104 251 109 HOH HOH . H 6 HOH A 105 252 110 HOH HOH . H 6 HOH A 106 253 111 HOH HOH . H 6 HOH A 107 254 112 HOH HOH . H 6 HOH A 108 255 113 HOH HOH . H 6 HOH A 109 256 114 HOH HOH . H 6 HOH A 110 257 115 HOH HOH . H 6 HOH A 111 258 116 HOH HOH . H 6 HOH A 112 259 117 HOH HOH . H 6 HOH A 113 260 118 HOH HOH . H 6 HOH A 114 261 119 HOH HOH . H 6 HOH A 115 262 120 HOH HOH . H 6 HOH A 116 263 121 HOH HOH . H 6 HOH A 117 264 122 HOH HOH . H 6 HOH A 118 265 123 HOH HOH . H 6 HOH A 119 266 124 HOH HOH . H 6 HOH A 120 267 125 HOH HOH . H 6 HOH A 121 268 126 HOH HOH . H 6 HOH A 122 269 127 HOH HOH . H 6 HOH A 123 270 128 HOH HOH . H 6 HOH A 124 271 129 HOH HOH . H 6 HOH A 125 272 130 HOH HOH . H 6 HOH A 126 273 131 HOH HOH . H 6 HOH A 127 274 132 HOH HOH . H 6 HOH A 128 275 133 HOH HOH . H 6 HOH A 129 276 134 HOH HOH . H 6 HOH A 130 277 135 HOH HOH . H 6 HOH A 131 278 136 HOH HOH . H 6 HOH A 132 279 137 HOH HOH . H 6 HOH A 133 280 138 HOH HOH . H 6 HOH A 134 281 139 HOH HOH . H 6 HOH A 135 282 140 HOH HOH . H 6 HOH A 136 283 141 HOH HOH . H 6 HOH A 137 284 142 HOH HOH . H 6 HOH A 138 285 143 HOH HOH . H 6 HOH A 139 286 144 HOH HOH . H 6 HOH A 140 287 145 HOH HOH . H 6 HOH A 141 288 146 HOH HOH . H 6 HOH A 142 289 147 HOH HOH . H 6 HOH A 143 290 148 HOH HOH . H 6 HOH A 144 291 149 HOH HOH . H 6 HOH A 145 292 150 HOH HOH . H 6 HOH A 146 293 151 HOH HOH . H 6 HOH A 147 294 152 HOH HOH . H 6 HOH A 148 295 153 HOH HOH . H 6 HOH A 149 296 154 HOH HOH . H 6 HOH A 150 297 155 HOH HOH . H 6 HOH A 151 298 156 HOH HOH . H 6 HOH A 152 299 157 HOH HOH . H 6 HOH A 153 300 158 HOH HOH . H 6 HOH A 154 301 159 HOH HOH . H 6 HOH A 155 302 160 HOH HOH . H 6 HOH A 156 303 161 HOH HOH . H 6 HOH A 157 304 162 HOH HOH . H 6 HOH A 158 305 163 HOH HOH . H 6 HOH A 159 306 164 HOH HOH . H 6 HOH A 160 307 165 HOH HOH . H 6 HOH A 161 308 166 HOH HOH . H 6 HOH A 162 309 167 HOH HOH . H 6 HOH A 163 310 168 HOH HOH . H 6 HOH A 164 311 169 HOH HOH . H 6 HOH A 165 312 170 HOH HOH . H 6 HOH A 166 313 171 HOH HOH . H 6 HOH A 167 314 172 HOH HOH . H 6 HOH A 168 315 173 HOH HOH . H 6 HOH A 169 316 174 HOH HOH . H 6 HOH A 170 317 175 HOH HOH . H 6 HOH A 171 318 176 HOH HOH . H 6 HOH A 172 319 177 HOH HOH . H 6 HOH A 173 320 178 HOH HOH . H 6 HOH A 174 321 179 HOH HOH . H 6 HOH A 175 322 180 HOH HOH . H 6 HOH A 176 323 181 HOH HOH . H 6 HOH A 177 324 182 HOH HOH . H 6 HOH A 178 325 183 HOH HOH . H 6 HOH A 179 326 184 HOH HOH . H 6 HOH A 180 327 185 HOH HOH . H 6 HOH A 181 328 186 HOH HOH . H 6 HOH A 182 329 187 HOH HOH . H 6 HOH A 183 330 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . B . G 3 19.558 49.763 24.062 0.5 27.27 ? C1 MRD 147 A 1 HETATM 2 C C2 MRD . B . G 3 20.112 48.389 24.408 0.5 21.34 ? C2 MRD 147 A 1 HETATM 3 O O2 MRD . B . G 3 19.128 47.755 25.263 0.5 19.85 ? O2 MRD 147 A 1 HETATM 4 C CM MRD . B . G 3 20.307 47.52 23.175 0.5 23.73 ? CM MRD 147 A 1 HETATM 5 C C3 MRD . B . G 3 21.465 48.483 25.084 0.5 24.01 ? C3 MRD 147 A 1 HETATM 6 C C4 MRD . B . G 3 21.378 48.9 26.536 0.5 25.28 ? C4 MRD 147 A 1 HETATM 7 O O4 MRD . B . G 3 22.534 49.563 27.006 0.5 29.15 ? O4 MRD 147 A 1 HETATM 8 C C5 MRD . B . G 3 21.161 47.607 27.281 0.5 18.12 ? C5 MRD 147 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 8 #