data_3BM5 # _model_server_result.job_id JmZVcp_fKtiLH8D868le4g _model_server_result.datetime_utc '2024-12-26 11:49:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":340}' # _entry.id 3BM5 # _exptl.entry_id 3BM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BM5 _cell.length_a 80.36 _cell.length_b 80.36 _cell.length_c 111.761 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 57 A LYS 58 1_555 F C4A PLP . A PLP 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.138 ? covale ? covale2 B NZ LYS 57 B LYS 58 1_555 J C4A PLP . B PLP 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 316 n n S O2 SO4 doub 317 n n S O3 SO4 sing 318 n n S O4 SO4 sing 319 n n # _atom_sites.entry_id 3BM5 _atom_sites.fract_transf_matrix[1][1] 0.012444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1 1 SO4 SO4 . D 2 SO4 A 1 340 3 SO4 SO4 . E 2 SO4 A 1 341 4 SO4 SO4 . F 3 PLP A 1 342 340 PLP PLP . G 2 SO4 B 1 340 2 SO4 SO4 . H 2 SO4 B 1 341 5 SO4 SO4 . I 2 SO4 B 1 342 6 SO4 SO4 . J 3 PLP B 1 343 340 PLP PLP . K 4 CYS B 1 402 402 CYS CYS . L 5 HOH A 1 343 2 HOH HOH . L 5 HOH A 2 344 4 HOH HOH . L 5 HOH A 3 345 5 HOH HOH . L 5 HOH A 4 346 7 HOH HOH . L 5 HOH A 5 347 9 HOH HOH . L 5 HOH A 6 348 11 HOH HOH . L 5 HOH A 7 349 12 HOH HOH . L 5 HOH A 8 350 13 HOH HOH . L 5 HOH A 9 351 16 HOH HOH . L 5 HOH A 10 352 17 HOH HOH . L 5 HOH A 11 353 18 HOH HOH . L 5 HOH A 12 354 19 HOH HOH . L 5 HOH A 13 355 20 HOH HOH . L 5 HOH A 14 356 21 HOH HOH . L 5 HOH A 15 357 22 HOH HOH . L 5 HOH A 16 358 25 HOH HOH . L 5 HOH A 17 359 29 HOH HOH . L 5 HOH A 18 360 33 HOH HOH . L 5 HOH A 19 361 34 HOH HOH . L 5 HOH A 20 362 35 HOH HOH . L 5 HOH A 21 363 36 HOH HOH . L 5 HOH A 22 364 38 HOH HOH . L 5 HOH A 23 365 39 HOH HOH . L 5 HOH A 24 366 41 HOH HOH . L 5 HOH A 25 367 42 HOH HOH . L 5 HOH A 26 368 43 HOH HOH . L 5 HOH A 27 369 44 HOH HOH . L 5 HOH A 28 370 45 HOH HOH . L 5 HOH A 29 371 48 HOH HOH . L 5 HOH A 30 372 49 HOH HOH . L 5 HOH A 31 373 51 HOH HOH . L 5 HOH A 32 374 52 HOH HOH . L 5 HOH A 33 375 53 HOH HOH . L 5 HOH A 34 376 54 HOH HOH . L 5 HOH A 35 377 55 HOH HOH . L 5 HOH A 36 378 61 HOH HOH . L 5 HOH A 37 379 65 HOH HOH . L 5 HOH A 38 380 66 HOH HOH . L 5 HOH A 39 381 77 HOH HOH . L 5 HOH A 40 382 79 HOH HOH . L 5 HOH A 41 383 80 HOH HOH . L 5 HOH A 42 384 81 HOH HOH . L 5 HOH A 43 385 85 HOH HOH . L 5 HOH A 44 386 89 HOH HOH . L 5 HOH A 45 387 92 HOH HOH . L 5 HOH A 46 388 94 HOH HOH . L 5 HOH A 47 389 95 HOH HOH . L 5 HOH A 48 390 97 HOH HOH . L 5 HOH A 49 391 98 HOH HOH . L 5 HOH A 50 392 100 HOH HOH . L 5 HOH A 51 393 102 HOH HOH . L 5 HOH A 52 394 104 HOH HOH . L 5 HOH A 53 395 107 HOH HOH . L 5 HOH A 54 396 108 HOH HOH . L 5 HOH A 55 397 111 HOH HOH . L 5 HOH A 56 398 114 HOH HOH . L 5 HOH A 57 399 116 HOH HOH . L 5 HOH A 58 400 118 HOH HOH . L 5 HOH A 59 401 119 HOH HOH . L 5 HOH A 60 402 120 HOH HOH . L 5 HOH A 61 403 121 HOH HOH . L 5 HOH A 62 404 123 HOH HOH . L 5 HOH A 63 405 124 HOH HOH . L 5 HOH A 64 406 125 HOH HOH . L 5 HOH A 65 407 126 HOH HOH . L 5 HOH A 66 408 127 HOH HOH . L 5 HOH A 67 409 128 HOH HOH . L 5 HOH A 68 410 130 HOH HOH . L 5 HOH A 69 411 132 HOH HOH . L 5 HOH A 70 412 137 HOH HOH . L 5 HOH A 71 413 141 HOH HOH . L 5 HOH A 72 414 143 HOH HOH . L 5 HOH A 73 415 144 HOH HOH . L 5 HOH A 74 416 145 HOH HOH . L 5 HOH A 75 417 146 HOH HOH . L 5 HOH A 76 418 149 HOH HOH . L 5 HOH A 77 419 152 HOH HOH . L 5 HOH A 78 420 153 HOH HOH . L 5 HOH A 79 421 154 HOH HOH . L 5 HOH A 80 422 155 HOH HOH . L 5 HOH A 81 423 158 HOH HOH . L 5 HOH A 82 424 159 HOH HOH . L 5 HOH A 83 425 160 HOH HOH . L 5 HOH A 84 426 162 HOH HOH . L 5 HOH A 85 427 163 HOH HOH . L 5 HOH A 86 428 164 HOH HOH . L 5 HOH A 87 429 166 HOH HOH . L 5 HOH A 88 430 167 HOH HOH . L 5 HOH A 89 431 170 HOH HOH . L 5 HOH A 90 432 172 HOH HOH . L 5 HOH A 91 433 173 HOH HOH . L 5 HOH A 92 434 174 HOH HOH . L 5 HOH A 93 435 175 HOH HOH . L 5 HOH A 94 436 177 HOH HOH . L 5 HOH A 95 437 179 HOH HOH . L 5 HOH A 96 438 180 HOH HOH . L 5 HOH A 97 439 181 HOH HOH . L 5 HOH A 98 440 184 HOH HOH . L 5 HOH A 99 441 185 HOH HOH . L 5 HOH A 100 442 187 HOH HOH . L 5 HOH A 101 443 188 HOH HOH . L 5 HOH A 102 444 193 HOH HOH . L 5 HOH A 103 445 194 HOH HOH . L 5 HOH A 104 446 195 HOH HOH . L 5 HOH A 105 447 197 HOH HOH . L 5 HOH A 106 448 198 HOH HOH . L 5 HOH A 107 449 201 HOH HOH . L 5 HOH A 108 450 205 HOH HOH . L 5 HOH A 109 451 215 HOH HOH . L 5 HOH A 110 452 219 HOH HOH . L 5 HOH A 111 453 221 HOH HOH . L 5 HOH A 112 454 223 HOH HOH . L 5 HOH A 113 455 224 HOH HOH . L 5 HOH A 114 456 225 HOH HOH . L 5 HOH A 115 457 229 HOH HOH . L 5 HOH A 116 458 231 HOH HOH . L 5 HOH A 117 459 234 HOH HOH . L 5 HOH A 118 460 237 HOH HOH . L 5 HOH A 119 461 239 HOH HOH . L 5 HOH A 120 462 240 HOH HOH . L 5 HOH A 121 463 245 HOH HOH . L 5 HOH A 122 464 252 HOH HOH . L 5 HOH A 123 465 257 HOH HOH . L 5 HOH A 124 466 258 HOH HOH . L 5 HOH A 125 467 259 HOH HOH . L 5 HOH A 126 468 262 HOH HOH . L 5 HOH A 127 469 263 HOH HOH . L 5 HOH A 128 470 264 HOH HOH . L 5 HOH A 129 471 265 HOH HOH . L 5 HOH A 130 472 269 HOH HOH . L 5 HOH A 131 473 270 HOH HOH . L 5 HOH A 132 474 283 HOH HOH . L 5 HOH A 133 475 284 HOH HOH . L 5 HOH A 134 476 286 HOH HOH . L 5 HOH A 135 477 295 HOH HOH . L 5 HOH A 136 478 299 HOH HOH . L 5 HOH A 137 479 300 HOH HOH . L 5 HOH A 138 480 304 HOH HOH . L 5 HOH A 139 481 305 HOH HOH . L 5 HOH A 140 482 14 HOH HOH . L 5 HOH A 141 483 297 HOH HOH . M 5 HOH B 1 403 1 HOH HOH . M 5 HOH B 2 404 3 HOH HOH . M 5 HOH B 3 405 6 HOH HOH . M 5 HOH B 4 406 8 HOH HOH . M 5 HOH B 5 407 10 HOH HOH . M 5 HOH B 6 409 15 HOH HOH . M 5 HOH B 7 410 23 HOH HOH . M 5 HOH B 8 411 24 HOH HOH . M 5 HOH B 9 412 26 HOH HOH . M 5 HOH B 10 413 27 HOH HOH . M 5 HOH B 11 414 28 HOH HOH . M 5 HOH B 12 415 30 HOH HOH . M 5 HOH B 13 416 31 HOH HOH . M 5 HOH B 14 417 32 HOH HOH . M 5 HOH B 15 418 37 HOH HOH . M 5 HOH B 16 419 40 HOH HOH . M 5 HOH B 17 420 46 HOH HOH . M 5 HOH B 18 421 47 HOH HOH . M 5 HOH B 19 422 50 HOH HOH . M 5 HOH B 20 423 56 HOH HOH . M 5 HOH B 21 424 57 HOH HOH . M 5 HOH B 22 425 58 HOH HOH . M 5 HOH B 23 426 59 HOH HOH . M 5 HOH B 24 427 60 HOH HOH . M 5 HOH B 25 428 62 HOH HOH . M 5 HOH B 26 429 63 HOH HOH . M 5 HOH B 27 430 64 HOH HOH . M 5 HOH B 28 431 67 HOH HOH . M 5 HOH B 29 432 68 HOH HOH . M 5 HOH B 30 433 69 HOH HOH . M 5 HOH B 31 434 70 HOH HOH . M 5 HOH B 32 435 71 HOH HOH . M 5 HOH B 33 436 72 HOH HOH . M 5 HOH B 34 437 73 HOH HOH . M 5 HOH B 35 438 75 HOH HOH . M 5 HOH B 36 439 76 HOH HOH . M 5 HOH B 37 440 78 HOH HOH . M 5 HOH B 38 441 82 HOH HOH . M 5 HOH B 39 442 83 HOH HOH . M 5 HOH B 40 443 84 HOH HOH . M 5 HOH B 41 444 86 HOH HOH . M 5 HOH B 42 445 87 HOH HOH . M 5 HOH B 43 446 88 HOH HOH . M 5 HOH B 44 447 90 HOH HOH . M 5 HOH B 45 448 91 HOH HOH . M 5 HOH B 46 449 93 HOH HOH . M 5 HOH B 47 450 96 HOH HOH . M 5 HOH B 48 451 99 HOH HOH . M 5 HOH B 49 452 101 HOH HOH . M 5 HOH B 50 453 103 HOH HOH . M 5 HOH B 51 454 105 HOH HOH . M 5 HOH B 52 455 106 HOH HOH . M 5 HOH B 53 456 109 HOH HOH . M 5 HOH B 54 457 110 HOH HOH . M 5 HOH B 55 458 112 HOH HOH . M 5 HOH B 56 459 113 HOH HOH . M 5 HOH B 57 460 117 HOH HOH . M 5 HOH B 58 461 122 HOH HOH . M 5 HOH B 59 462 129 HOH HOH . M 5 HOH B 60 463 131 HOH HOH . M 5 HOH B 61 464 133 HOH HOH . M 5 HOH B 62 465 134 HOH HOH . M 5 HOH B 63 466 140 HOH HOH . M 5 HOH B 64 467 142 HOH HOH . M 5 HOH B 65 468 147 HOH HOH . M 5 HOH B 66 469 148 HOH HOH . M 5 HOH B 67 470 150 HOH HOH . M 5 HOH B 68 471 157 HOH HOH . M 5 HOH B 69 472 161 HOH HOH . M 5 HOH B 70 473 165 HOH HOH . M 5 HOH B 71 474 171 HOH HOH . M 5 HOH B 72 475 176 HOH HOH . M 5 HOH B 73 476 178 HOH HOH . M 5 HOH B 74 477 182 HOH HOH . M 5 HOH B 75 478 183 HOH HOH . M 5 HOH B 76 479 186 HOH HOH . M 5 HOH B 77 480 189 HOH HOH . M 5 HOH B 78 481 190 HOH HOH . M 5 HOH B 79 482 191 HOH HOH . M 5 HOH B 80 483 196 HOH HOH . M 5 HOH B 81 484 199 HOH HOH . M 5 HOH B 82 485 200 HOH HOH . M 5 HOH B 83 486 203 HOH HOH . M 5 HOH B 84 487 204 HOH HOH . M 5 HOH B 85 488 206 HOH HOH . M 5 HOH B 86 489 207 HOH HOH . M 5 HOH B 87 490 210 HOH HOH . M 5 HOH B 88 491 211 HOH HOH . M 5 HOH B 89 492 213 HOH HOH . M 5 HOH B 90 493 214 HOH HOH . M 5 HOH B 91 494 216 HOH HOH . M 5 HOH B 92 495 222 HOH HOH . M 5 HOH B 93 496 226 HOH HOH . M 5 HOH B 94 497 228 HOH HOH . M 5 HOH B 95 498 232 HOH HOH . M 5 HOH B 96 499 233 HOH HOH . M 5 HOH B 97 500 235 HOH HOH . M 5 HOH B 98 501 242 HOH HOH . M 5 HOH B 99 502 243 HOH HOH . M 5 HOH B 100 503 249 HOH HOH . M 5 HOH B 101 504 250 HOH HOH . M 5 HOH B 102 505 251 HOH HOH . M 5 HOH B 103 506 253 HOH HOH . M 5 HOH B 104 507 255 HOH HOH . M 5 HOH B 105 508 260 HOH HOH . M 5 HOH B 106 509 267 HOH HOH . M 5 HOH B 107 510 271 HOH HOH . M 5 HOH B 108 511 272 HOH HOH . M 5 HOH B 109 512 273 HOH HOH . M 5 HOH B 110 513 276 HOH HOH . M 5 HOH B 111 514 278 HOH HOH . M 5 HOH B 112 515 280 HOH HOH . M 5 HOH B 113 516 281 HOH HOH . M 5 HOH B 114 517 287 HOH HOH . M 5 HOH B 115 518 289 HOH HOH . M 5 HOH B 116 519 293 HOH HOH . M 5 HOH B 117 520 294 HOH HOH . M 5 HOH B 118 521 296 HOH HOH . M 5 HOH B 119 523 298 HOH HOH . M 5 HOH B 120 524 301 HOH HOH . M 5 HOH B 121 525 302 HOH HOH . M 5 HOH B 122 526 303 HOH HOH . M 5 HOH B 123 527 306 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 2 -0.966 51.166 9.659 1 95.58 ? S SO4 340 B 1 HETATM 2 O O1 SO4 . . . G 2 0.156 51.523 8.772 1 95.73 ? O1 SO4 340 B 1 HETATM 3 O O2 SO4 . . . G 2 -1.92 50.341 8.907 1 94.14 ? O2 SO4 340 B 1 HETATM 4 O O3 SO4 . . . G 2 -0.46 50.409 10.822 1 93.75 ? O3 SO4 340 B 1 HETATM 5 O O4 SO4 . . . G 2 -1.647 52.396 10.112 1 94.17 ? O4 SO4 340 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #