data_3BM7 # _model_server_result.job_id EtKmRY-4WFV1bEcGB6y48Q _model_server_result.datetime_utc '2024-10-25 20:19:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":98}' # _entry.id 3BM7 # _exptl.entry_id 3BM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BM7 _cell.length_a 61.78 _cell.length_b 81.2 _cell.length_c 46.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 0 0 70.14 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 19 A GLY 0 1_555 A N MSE 20 A MSE 1 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C GLY 19 A GLY 0 1_555 A N MSE 20 A MSE 1 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.315 ? covale ? covale3 A C MSE 20 A MSE 1 1_555 A N ILE 21 A ILE 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 20 A MSE 1 1_555 A N ILE 21 A ILE 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C SER 78 A SER 59 1_555 A N MSE 79 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 79 A MSE 60 1_555 A N ASP 80 A ASP 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C ALA 97 A ALA 78 1_555 A N MSE 98 A MSE 79 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C ALA 97 A ALA 78 1_555 A N MSE 98 A MSE 79 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C MSE 98 A MSE 79 1_555 A N GLY 99 A GLY 80 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 98 A MSE 79 1_555 A N GLY 99 A GLY 80 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C THR 101 A THR 82 1_555 A N MSE 102 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MSE 102 A MSE 83 1_555 A N ALA 103 A ALA 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3BM7 _atom_sites.fract_transf_matrix[1][1] 0.016186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 97 1 EDO EDO . C 2 EDO A 1 98 2 EDO EDO . D 3 HOH A 1 99 3 HOH HOH . D 3 HOH A 2 100 4 HOH HOH . D 3 HOH A 3 101 5 HOH HOH . D 3 HOH A 4 102 6 HOH HOH . D 3 HOH A 5 103 7 HOH HOH . D 3 HOH A 6 104 8 HOH HOH . D 3 HOH A 7 105 9 HOH HOH . D 3 HOH A 8 106 10 HOH HOH . D 3 HOH A 9 107 11 HOH HOH . D 3 HOH A 10 108 12 HOH HOH . D 3 HOH A 11 109 13 HOH HOH . D 3 HOH A 12 110 14 HOH HOH . D 3 HOH A 13 111 15 HOH HOH . D 3 HOH A 14 112 16 HOH HOH . D 3 HOH A 15 113 17 HOH HOH . D 3 HOH A 16 114 18 HOH HOH . D 3 HOH A 17 115 19 HOH HOH . D 3 HOH A 18 116 20 HOH HOH . D 3 HOH A 19 117 21 HOH HOH . D 3 HOH A 20 118 22 HOH HOH . D 3 HOH A 21 119 23 HOH HOH . D 3 HOH A 22 120 24 HOH HOH . D 3 HOH A 23 121 25 HOH HOH . D 3 HOH A 24 122 26 HOH HOH . D 3 HOH A 25 123 27 HOH HOH . D 3 HOH A 26 124 28 HOH HOH . D 3 HOH A 27 125 29 HOH HOH . D 3 HOH A 28 126 30 HOH HOH . D 3 HOH A 29 127 31 HOH HOH . D 3 HOH A 30 128 32 HOH HOH . D 3 HOH A 31 129 33 HOH HOH . D 3 HOH A 32 130 34 HOH HOH . D 3 HOH A 33 131 35 HOH HOH . D 3 HOH A 34 132 36 HOH HOH . D 3 HOH A 35 133 37 HOH HOH . D 3 HOH A 36 134 38 HOH HOH . D 3 HOH A 37 135 39 HOH HOH . D 3 HOH A 38 136 40 HOH HOH . D 3 HOH A 39 137 41 HOH HOH . D 3 HOH A 40 138 42 HOH HOH . D 3 HOH A 41 139 43 HOH HOH . D 3 HOH A 42 140 44 HOH HOH . D 3 HOH A 43 141 45 HOH HOH . D 3 HOH A 44 142 46 HOH HOH . D 3 HOH A 45 143 47 HOH HOH . D 3 HOH A 46 144 48 HOH HOH . D 3 HOH A 47 145 49 HOH HOH . D 3 HOH A 48 146 50 HOH HOH . D 3 HOH A 49 147 51 HOH HOH . D 3 HOH A 50 148 52 HOH HOH . D 3 HOH A 51 149 53 HOH HOH . D 3 HOH A 52 150 54 HOH HOH . D 3 HOH A 53 151 55 HOH HOH . D 3 HOH A 54 152 56 HOH HOH . D 3 HOH A 55 153 57 HOH HOH . D 3 HOH A 56 154 58 HOH HOH . D 3 HOH A 57 155 59 HOH HOH . D 3 HOH A 58 156 60 HOH HOH . D 3 HOH A 59 157 61 HOH HOH . D 3 HOH A 60 158 62 HOH HOH . D 3 HOH A 61 159 63 HOH HOH . D 3 HOH A 62 160 64 HOH HOH . D 3 HOH A 63 161 65 HOH HOH . D 3 HOH A 64 162 66 HOH HOH . D 3 HOH A 65 163 67 HOH HOH . D 3 HOH A 66 164 68 HOH HOH . D 3 HOH A 67 165 69 HOH HOH . D 3 HOH A 68 166 70 HOH HOH . D 3 HOH A 69 167 71 HOH HOH . D 3 HOH A 70 168 72 HOH HOH . D 3 HOH A 71 169 73 HOH HOH . D 3 HOH A 72 170 74 HOH HOH . D 3 HOH A 73 171 75 HOH HOH . D 3 HOH A 74 172 76 HOH HOH . D 3 HOH A 75 173 77 HOH HOH . D 3 HOH A 76 174 78 HOH HOH . D 3 HOH A 77 175 79 HOH HOH . D 3 HOH A 78 176 80 HOH HOH . D 3 HOH A 79 177 81 HOH HOH . D 3 HOH A 80 178 82 HOH HOH . D 3 HOH A 81 179 83 HOH HOH . D 3 HOH A 82 180 84 HOH HOH . D 3 HOH A 83 181 85 HOH HOH . D 3 HOH A 84 182 86 HOH HOH . D 3 HOH A 85 183 87 HOH HOH . D 3 HOH A 86 184 88 HOH HOH . D 3 HOH A 87 185 89 HOH HOH . D 3 HOH A 88 186 90 HOH HOH . D 3 HOH A 89 187 91 HOH HOH . D 3 HOH A 90 188 92 HOH HOH . D 3 HOH A 91 189 93 HOH HOH . D 3 HOH A 92 190 94 HOH HOH . D 3 HOH A 93 191 95 HOH HOH . D 3 HOH A 94 192 96 HOH HOH . D 3 HOH A 95 193 97 HOH HOH . D 3 HOH A 96 194 98 HOH HOH . D 3 HOH A 97 195 99 HOH HOH . D 3 HOH A 98 196 100 HOH HOH . D 3 HOH A 99 197 101 HOH HOH . D 3 HOH A 100 198 102 HOH HOH . D 3 HOH A 101 199 103 HOH HOH . D 3 HOH A 102 200 104 HOH HOH . D 3 HOH A 103 201 105 HOH HOH . D 3 HOH A 104 202 106 HOH HOH . D 3 HOH A 105 203 107 HOH HOH . D 3 HOH A 106 204 108 HOH HOH . D 3 HOH A 107 205 109 HOH HOH . D 3 HOH A 108 206 110 HOH HOH . D 3 HOH A 109 207 111 HOH HOH . D 3 HOH A 110 208 112 HOH HOH . D 3 HOH A 111 209 113 HOH HOH . D 3 HOH A 112 210 114 HOH HOH . D 3 HOH A 113 211 115 HOH HOH . D 3 HOH A 114 212 116 HOH HOH . D 3 HOH A 115 213 117 HOH HOH . D 3 HOH A 116 214 118 HOH HOH . D 3 HOH A 117 215 119 HOH HOH . D 3 HOH A 118 216 120 HOH HOH . D 3 HOH A 119 217 121 HOH HOH . D 3 HOH A 120 218 122 HOH HOH . D 3 HOH A 121 219 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -2.836 18.705 48.279 1 34.89 ? C1 EDO 98 A 1 HETATM 2 O O1 EDO . . . C 2 -4.012 18.192 48.885 1 45.57 ? O1 EDO 98 A 1 HETATM 3 C C2 EDO . . . C 2 -1.798 19.107 49.293 1 31.61 ? C2 EDO 98 A 1 HETATM 4 O O2 EDO . . . C 2 -1.835 20.497 49.513 1 46.94 ? O2 EDO 98 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #