data_3BNL
#
_model_server_result.job_id            8Jx9rP1oejmWAvt-mFtlqw 
_model_server_result.datetime_utc      '2025-07-08 05:41:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":27}' 
#
_entry.id    3BNL 
#
_exptl.entry_id    3BNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              161.116 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT HEXAMMINE(III)' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BNL 
_cell.length_a            73.599 
_cell.length_b            73.599 
_cell.length_c            63.496 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N1 G 2 A G 2 1_555 B N3 C 22 B C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 G 2 A G 2 1_555 B O2 C 22 B C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 G 2 A G 2 1_555 B N4 C 22 B C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 C 3 A C 3 1_555 B N1 G 21 B G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N4 C 3 A C 3 1_555 B O6 G 21 B G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O2 C 3 A C 3 1_555 B N2 G 21 B G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 G 4 A G 4 1_555 B N3 C 20 B C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N2 G 4 A G 4 1_555 B O2 C 20 B C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O6 G 4 A G 4 1_555 B N4 C 20 B C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_16_PAIR hydrog10 A N3 U 5 A U 5 1_555 B O4 U 19 B U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_16_PAIR hydrog11 A O2 U 5 A U 5 1_555 B N3 U 19 B U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N3 C 6 A C 6 1_555 B N1 G 18 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N4 C 6 A C 6 1_555 B O6 G 18 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O2 C 6 A C 6 1_555 B N2 G 18 B G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'A-A MISPAIR' hydrog15 A N1 A 7 A A 7 1_555 B N6 A 17 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N3 C 8 A C 8 1_555 B N1 G 15 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N4 C 8 A C 8 1_555 B O6 G 15 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O2 C 8 A C 8 1_555 B N2 G 15 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N1 A 9 A A 9 1_555 B N3 U 14 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N6 A 9 A A 9 1_555 B O4 U 14 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N3 C 10 A C 10 1_555 B N1 G 13 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N4 C 10 A C 10 1_555 B O6 G 13 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A O2 C 10 A C 10 1_555 B N2 G 13 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N3 C 11 A C 11 1_555 B N1 G 12 B G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N4 C 11 A C 11 1_555 B O6 G 12 B G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A O2 C 11 A C 11 1_555 B N2 G 12 B G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A N1 G 12 A G 12 1_555 B N3 C 11 B C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A N2 G 12 A G 12 1_555 B O2 C 11 B C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 A O6 G 12 A G 12 1_555 B N4 C 11 B C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 A N1 G 13 A G 13 1_555 B N3 C 10 B C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 A N2 G 13 A G 13 1_555 B O2 C 10 B C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 A O6 G 13 A G 13 1_555 B N4 C 10 B C 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 A N3 U 14 A U 14 1_555 B N1 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog34 A O4 U 14 A U 14 1_555 B N6 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog35 A N1 G 15 A G 15 1_555 B N3 C 8 B C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog36 A N2 G 15 A G 15 1_555 B O2 C 8 B C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog37 A O6 G 15 A G 15 1_555 B N4 C 8 B C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'A-A MISPAIR' hydrog38 A N6 A 17 A A 17 1_555 B N1 A 7 B A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog39 A N1 G 18 A G 18 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog40 A N2 G 18 A G 18 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog41 A O6 G 18 A G 18 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_16_PAIR hydrog42 A N3 U 19 A U 19 1_555 B O2 U 5 B U 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_16_PAIR hydrog43 A O4 U 19 A U 19 1_555 B N3 U 5 B U 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog44 A N3 C 20 A C 20 1_555 B N1 G 4 B G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog45 A N4 C 20 A C 20 1_555 B O6 G 4 B G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog46 A O2 C 20 A C 20 1_555 B N2 G 4 B G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog47 A N1 G 21 A G 21 1_555 B N3 C 3 B C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog48 A N2 G 21 A G 21 1_555 B O2 C 3 B C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog49 A O6 G 21 A G 21 1_555 B N4 C 3 B C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog50 A N3 C 22 A C 22 1_555 B N1 G 2 B G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog51 A N4 C 22 A C 22 1_555 B O6 G 2 B G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog52 A O2 C 22 A C 22 1_555 B N2 G 2 B G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Co H18 N6 3' 
_chem_comp.formula_weight    161.116 
_chem_comp.id                NCO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT HEXAMMINE(III)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CO N1 NCO sing 118 n n 
CO N2 NCO sing 119 n n 
CO N3 NCO sing 120 n n 
CO N4 NCO sing 121 n n 
CO N5 NCO sing 122 n n 
CO N6 NCO sing 123 n n 
N1 HN11 NCO sing 124 n n 
N1 HN12 NCO sing 125 n n 
N1 HN13 NCO sing 126 n n 
N2 HN21 NCO sing 127 n n 
N2 HN22 NCO sing 128 n n 
N2 HN23 NCO sing 129 n n 
N3 HN31 NCO sing 130 n n 
N3 HN32 NCO sing 131 n n 
N3 HN33 NCO sing 132 n n 
N4 HN41 NCO sing 133 n n 
N4 HN42 NCO sing 134 n n 
N4 HN43 NCO sing 135 n n 
N5 HN51 NCO sing 136 n n 
N5 HN52 NCO sing 137 n n 
N5 HN53 NCO sing 138 n n 
N6 HN61 NCO sing 139 n n 
N6 HN62 NCO sing 140 n n 
N6 HN63 NCO sing 141 n n 
#
_atom_sites.entry_id                     3BNL 
_atom_sites.fract_transf_matrix[1][1]    0.013587 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013587 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015749 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NCO A 1 23 1 NCO NCO . 
D 2 NCO A 1 24 1 NCO NCO . 
E 2 NCO A 1 25 1 NCO NCO . 
F 2 NCO B 1 23 1 NCO NCO . 
G 2 NCO B 1 24 1 NCO NCO . 
H 2 NCO B 1 25 1 NCO NCO . 
I 2 NCO B 1 26 1 NCO NCO . 
J 2 NCO B 1 27 1 NCO NCO . 
K 3 HOH A 1 26 1 HOH HOH . 
K 3 HOH A 2 27 2 HOH HOH . 
K 3 HOH A 3 28 3 HOH HOH . 
K 3 HOH A 4 29 4 HOH HOH . 
K 3 HOH A 5 30 5 HOH HOH . 
K 3 HOH A 6 31 6 HOH HOH . 
K 3 HOH A 7 32 7 HOH HOH . 
K 3 HOH A 8 33 8 HOH HOH . 
K 3 HOH A 9 34 9 HOH HOH . 
K 3 HOH A 10 35 10 HOH HOH . 
K 3 HOH A 11 36 11 HOH HOH . 
K 3 HOH A 12 37 12 HOH HOH . 
K 3 HOH A 13 38 13 HOH HOH . 
K 3 HOH A 14 39 14 HOH HOH . 
K 3 HOH A 15 40 15 HOH HOH . 
K 3 HOH A 16 41 16 HOH HOH . 
K 3 HOH A 17 42 17 HOH HOH . 
K 3 HOH A 18 43 18 HOH HOH . 
K 3 HOH A 19 44 19 HOH HOH . 
K 3 HOH A 20 45 20 HOH HOH . 
K 3 HOH A 21 46 21 HOH HOH . 
L 3 HOH B 1 28 1 HOH HOH . 
L 3 HOH B 2 29 2 HOH HOH . 
L 3 HOH B 3 30 3 HOH HOH . 
L 3 HOH B 4 31 4 HOH HOH . 
L 3 HOH B 5 32 5 HOH HOH . 
L 3 HOH B 6 33 6 HOH HOH . 
L 3 HOH B 7 34 7 HOH HOH . 
L 3 HOH B 8 35 8 HOH HOH . 
L 3 HOH B 9 36 9 HOH HOH . 
L 3 HOH B 10 37 10 HOH HOH . 
L 3 HOH B 11 38 11 HOH HOH . 
L 3 HOH B 12 39 12 HOH HOH . 
L 3 HOH B 13 40 13 HOH HOH . 
L 3 HOH B 14 41 14 HOH HOH . 
L 3 HOH B 15 42 15 HOH HOH . 
L 3 HOH B 16 43 16 HOH HOH . 
L 3 HOH B 17 44 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CO CO NCO . . . J 2 68.828 32.94 -5.003 0.82 72.16 ? CO NCO 27 B 1 
HETATM 2 N N1 NCO . . . J 2 67.829 34.101 -3.766 0.82 70.38 ? N1 NCO 27 B 1 
HETATM 3 N N2 NCO . . . J 2 69.898 32.128 -3.643 0.82 49.15 ? N2 NCO 27 B 1 
HETATM 4 N N3 NCO . . . J 2 70.085 34.441 -5.286 0.82 21.44 ? N3 NCO 27 B 1 
HETATM 5 N N4 NCO . . . J 2 67.525 31.513 -4.754 0.82 56.18 ? N4 NCO 27 B 1 
HETATM 6 N N5 NCO . . . J 2 69.783 31.837 -6.296 0.82 55.82 ? N5 NCO 27 B 1 
HETATM 7 N N6 NCO . . . J 2 67.719 33.668 -6.421 0.82 58.19 ? N6 NCO 27 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           4 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#