data_3BNZ # _model_server_result.job_id GV5IodBsnvj2SpWQcmwdNg _model_server_result.datetime_utc '2024-11-26 20:08:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bnz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":318}' # _entry.id 3BNZ # _exptl.entry_id 3BNZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.263 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-methyl-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BNZ _cell.length_a 76.563 _cell.length_b 76.563 _cell.length_c 213.073 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BNZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -35.512167 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H10 N2 O2' _chem_comp.formula_weight 262.263 _chem_comp.id C16 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-methyl-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C39 N41 C16 trip 70 n n C39 C32 C16 sing 71 n n C34 C32 C16 doub 72 n y C32 C30 C16 sing 73 n y C30 C28 C16 doub 74 n y C30 H30 C16 sing 75 n n C26 C28 C16 sing 76 n y C28 H28 C16 sing 77 n n C34 C36 C16 sing 78 n y C34 H34 C16 sing 79 n n C36 C26 C16 doub 80 n y C36 H36 C16 sing 81 n n C26 N19 C16 sing 82 n n C21 N19 C16 sing 83 n n N19 C15 C16 sing 84 n n O23 C21 C16 doub 85 n n C21 C6 C16 sing 86 n n C6 C4 C16 doub 87 n y C6 C8 C16 sing 88 n y C4 C2 C16 sing 89 n y C4 H4 C16 sing 90 n n C2 C1 C16 doub 91 n y C2 H2 C16 sing 92 n n C15 O17 C16 doub 93 n n C15 C8 C16 sing 94 n n C8 C10 C16 doub 95 n y C10 C1 C16 sing 96 n y C10 C13 C16 sing 97 n n C13 H13 C16 sing 98 n n C13 H13A C16 sing 99 n n C13 H13B C16 sing 100 n n C1 H1 C16 sing 101 n n # _atom_sites.entry_id 3BNZ _atom_sites.fract_transf_matrix[1][1] 0.013061 _atom_sites.fract_transf_matrix[1][2] 0.007541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 319 1 PO4 PO4 . C 3 UMP A 1 317 317 UMP UMP . D 4 C16 A 1 318 318 C16 C16 . E 5 HOH A 1 320 1 HOH HOH . E 5 HOH A 2 321 2 HOH HOH . E 5 HOH A 3 322 3 HOH HOH . E 5 HOH A 4 323 4 HOH HOH . E 5 HOH A 5 324 5 HOH HOH . E 5 HOH A 6 325 6 HOH HOH . E 5 HOH A 7 326 7 HOH HOH . E 5 HOH A 8 327 8 HOH HOH . E 5 HOH A 9 328 9 HOH HOH . E 5 HOH A 10 329 10 HOH HOH . E 5 HOH A 11 330 11 HOH HOH . E 5 HOH A 12 331 12 HOH HOH . E 5 HOH A 13 332 13 HOH HOH . E 5 HOH A 14 333 14 HOH HOH . E 5 HOH A 15 334 15 HOH HOH . E 5 HOH A 16 335 16 HOH HOH . E 5 HOH A 17 336 17 HOH HOH . E 5 HOH A 18 337 18 HOH HOH . E 5 HOH A 19 338 19 HOH HOH . E 5 HOH A 20 339 20 HOH HOH . E 5 HOH A 21 340 21 HOH HOH . E 5 HOH A 22 341 22 HOH HOH . E 5 HOH A 23 342 23 HOH HOH . E 5 HOH A 24 343 24 HOH HOH . E 5 HOH A 25 344 25 HOH HOH . E 5 HOH A 26 345 26 HOH HOH . E 5 HOH A 27 346 27 HOH HOH . E 5 HOH A 28 347 28 HOH HOH . E 5 HOH A 29 348 29 HOH HOH . E 5 HOH A 30 349 30 HOH HOH . E 5 HOH A 31 350 31 HOH HOH . E 5 HOH A 32 351 32 HOH HOH . E 5 HOH A 33 352 33 HOH HOH . E 5 HOH A 34 353 34 HOH HOH . E 5 HOH A 35 354 35 HOH HOH . E 5 HOH A 36 355 36 HOH HOH . E 5 HOH A 37 356 37 HOH HOH . E 5 HOH A 38 357 38 HOH HOH . E 5 HOH A 39 358 39 HOH HOH . E 5 HOH A 40 359 40 HOH HOH . E 5 HOH A 41 360 41 HOH HOH . E 5 HOH A 42 361 42 HOH HOH . E 5 HOH A 43 362 43 HOH HOH . E 5 HOH A 44 363 44 HOH HOH . E 5 HOH A 45 364 45 HOH HOH . E 5 HOH A 46 365 46 HOH HOH . E 5 HOH A 47 366 47 HOH HOH . E 5 HOH A 48 367 48 HOH HOH . E 5 HOH A 49 368 49 HOH HOH . E 5 HOH A 50 369 50 HOH HOH . E 5 HOH A 51 370 51 HOH HOH . E 5 HOH A 52 371 52 HOH HOH . E 5 HOH A 53 372 53 HOH HOH . E 5 HOH A 54 373 54 HOH HOH . E 5 HOH A 55 374 55 HOH HOH . E 5 HOH A 56 375 56 HOH HOH . E 5 HOH A 57 376 57 HOH HOH . E 5 HOH A 58 377 58 HOH HOH . E 5 HOH A 59 378 59 HOH HOH . E 5 HOH A 60 379 60 HOH HOH . E 5 HOH A 61 380 61 HOH HOH . E 5 HOH A 62 381 62 HOH HOH . E 5 HOH A 63 382 63 HOH HOH . E 5 HOH A 64 383 64 HOH HOH . E 5 HOH A 65 384 65 HOH HOH . E 5 HOH A 66 385 66 HOH HOH . E 5 HOH A 67 386 67 HOH HOH . E 5 HOH A 68 387 68 HOH HOH . E 5 HOH A 69 388 69 HOH HOH . E 5 HOH A 70 389 70 HOH HOH . E 5 HOH A 71 390 71 HOH HOH . E 5 HOH A 72 391 72 HOH HOH . E 5 HOH A 73 392 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N41 C16 . . . D 4 -25.228 44.136 -8.178 1 93 ? N41 C16 318 A 1 HETATM 2 C C39 C16 . . . D 4 -25.591 43.109 -8.396 1 93 ? C39 C16 318 A 1 HETATM 3 C C32 C16 . . . D 4 -26.03 41.905 -8.309 1 93 ? C32 C16 318 A 1 HETATM 4 C C30 C16 . . . D 4 -25.938 41.251 -7.087 1 93 ? C30 C16 318 A 1 HETATM 5 C C28 C16 . . . D 4 -26.385 39.934 -7.005 1 93 ? C28 C16 318 A 1 HETATM 6 C C34 C16 . . . D 4 -26.543 41.247 -9.431 1 93 ? C34 C16 318 A 1 HETATM 7 C C36 C16 . . . D 4 -26.987 39.929 -9.314 1 93 ? C36 C16 318 A 1 HETATM 8 C C26 C16 . . . D 4 -26.939 39.221 -8.093 1 93 ? C26 C16 318 A 1 HETATM 9 N N19 C16 . . . D 4 -27.343 37.93 -7.956 1 93 ? N19 C16 318 A 1 HETATM 10 C C21 C16 . . . D 4 -28.619 37.415 -7.97 1 93 ? C21 C16 318 A 1 HETATM 11 O O23 C16 . . . D 4 -29.759 38.009 -8.134 1 93 ? O23 C16 318 A 1 HETATM 12 C C6 C16 . . . D 4 -28.593 35.948 -7.777 1 93 ? C6 C16 318 A 1 HETATM 13 C C4 C16 . . . D 4 -29.568 34.958 -7.714 1 93 ? C4 C16 318 A 1 HETATM 14 C C2 C16 . . . D 4 -29.108 33.648 -7.512 1 93 ? C2 C16 318 A 1 HETATM 15 C C15 C16 . . . D 4 -26.442 36.942 -7.757 1 93 ? C15 C16 318 A 1 HETATM 16 O O17 C16 . . . D 4 -25.151 37.024 -7.677 1 93 ? O17 C16 318 A 1 HETATM 17 C C8 C16 . . . D 4 -27.143 35.653 -7.638 1 93 ? C8 C16 318 A 1 HETATM 18 C C10 C16 . . . D 4 -26.719 34.279 -7.429 1 93 ? C10 C16 318 A 1 HETATM 19 C C13 C16 . . . D 4 -25.237 34.05 -7.314 1 93 ? C13 C16 318 A 1 HETATM 20 C C1 C16 . . . D 4 -27.737 33.315 -7.373 1 93 ? C1 C16 318 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #