data_3BOD # _model_server_result.job_id C4SuRZnN6TbrhXwMSdpWUg _model_server_result.datetime_utc '2024-11-05 08:24:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3BOD # _exptl.entry_id 3BOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BOD _cell.length_a 44.997 _cell.length_b 49.137 _cell.length_c 63.556 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B CA CA . A CA 1 1_555 A OD2 ASP 57 A ASP 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc2 B CA CA . A CA 1 1_555 A O VAL 74 A VAL 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 B CA CA . A CA 1 1_555 A O ILE 126 A ILE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 B CA CA . A CA 1 1_555 A OD1 ASN 128 A ASN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 B CA CA . A CA 1 1_555 C O HOH . A HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BOD _atom_sites.fract_transf_matrix[1][1] 0.022224 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1 1 CA CA . C 3 HOH A 1 259 1 HOH HOH . C 3 HOH A 2 260 2 HOH HOH . C 3 HOH A 3 261 3 HOH HOH . C 3 HOH A 4 262 4 HOH HOH . C 3 HOH A 5 263 5 HOH HOH . C 3 HOH A 6 264 6 HOH HOH . C 3 HOH A 7 265 7 HOH HOH . C 3 HOH A 8 266 8 HOH HOH . C 3 HOH A 9 267 9 HOH HOH . C 3 HOH A 10 268 10 HOH HOH . C 3 HOH A 11 269 11 HOH HOH . C 3 HOH A 12 270 12 HOH HOH . C 3 HOH A 13 271 13 HOH HOH . C 3 HOH A 14 272 14 HOH HOH . C 3 HOH A 15 273 15 HOH HOH . C 3 HOH A 16 274 16 HOH HOH . C 3 HOH A 17 275 17 HOH HOH . C 3 HOH A 18 276 18 HOH HOH . C 3 HOH A 19 277 19 HOH HOH . C 3 HOH A 20 278 20 HOH HOH . C 3 HOH A 21 279 21 HOH HOH . C 3 HOH A 22 280 22 HOH HOH . C 3 HOH A 23 281 23 HOH HOH . C 3 HOH A 24 282 24 HOH HOH . C 3 HOH A 25 283 25 HOH HOH . C 3 HOH A 26 284 26 HOH HOH . C 3 HOH A 27 285 27 HOH HOH . C 3 HOH A 28 286 28 HOH HOH . C 3 HOH A 29 287 29 HOH HOH . C 3 HOH A 30 288 30 HOH HOH . C 3 HOH A 31 289 31 HOH HOH . C 3 HOH A 32 290 32 HOH HOH . C 3 HOH A 33 291 33 HOH HOH . C 3 HOH A 34 292 34 HOH HOH . C 3 HOH A 35 293 35 HOH HOH . C 3 HOH A 36 294 36 HOH HOH . C 3 HOH A 37 295 37 HOH HOH . C 3 HOH A 38 296 38 HOH HOH . C 3 HOH A 39 297 39 HOH HOH . C 3 HOH A 40 298 40 HOH HOH . C 3 HOH A 41 299 41 HOH HOH . C 3 HOH A 42 300 42 HOH HOH . C 3 HOH A 43 301 43 HOH HOH . C 3 HOH A 44 302 44 HOH HOH . C 3 HOH A 45 303 45 HOH HOH . C 3 HOH A 46 304 46 HOH HOH . C 3 HOH A 47 305 47 HOH HOH . C 3 HOH A 48 306 48 HOH HOH . C 3 HOH A 49 307 49 HOH HOH . C 3 HOH A 50 308 50 HOH HOH . C 3 HOH A 51 309 51 HOH HOH . C 3 HOH A 52 310 52 HOH HOH . C 3 HOH A 53 311 53 HOH HOH . C 3 HOH A 54 312 54 HOH HOH . C 3 HOH A 55 313 55 HOH HOH . C 3 HOH A 56 314 56 HOH HOH . C 3 HOH A 57 315 57 HOH HOH . C 3 HOH A 58 316 58 HOH HOH . C 3 HOH A 59 317 59 HOH HOH . C 3 HOH A 60 318 60 HOH HOH . C 3 HOH A 61 319 61 HOH HOH . C 3 HOH A 62 320 62 HOH HOH . C 3 HOH A 63 321 63 HOH HOH . C 3 HOH A 64 322 64 HOH HOH . C 3 HOH A 65 323 65 HOH HOH . C 3 HOH A 66 324 66 HOH HOH . C 3 HOH A 67 325 67 HOH HOH . C 3 HOH A 68 326 68 HOH HOH . C 3 HOH A 69 327 69 HOH HOH . C 3 HOH A 70 328 70 HOH HOH . C 3 HOH A 71 329 71 HOH HOH . C 3 HOH A 72 330 72 HOH HOH . C 3 HOH A 73 331 73 HOH HOH . C 3 HOH A 74 332 74 HOH HOH . C 3 HOH A 75 333 75 HOH HOH . C 3 HOH A 76 334 76 HOH HOH . C 3 HOH A 77 335 77 HOH HOH . C 3 HOH A 78 336 78 HOH HOH . C 3 HOH A 79 337 79 HOH HOH . C 3 HOH A 80 338 80 HOH HOH . C 3 HOH A 81 339 81 HOH HOH . C 3 HOH A 82 340 82 HOH HOH . C 3 HOH A 83 341 83 HOH HOH . C 3 HOH A 84 342 84 HOH HOH . C 3 HOH A 85 343 85 HOH HOH . C 3 HOH A 86 344 86 HOH HOH . C 3 HOH A 87 345 87 HOH HOH . C 3 HOH A 88 346 88 HOH HOH . C 3 HOH A 89 347 89 HOH HOH . C 3 HOH A 90 348 90 HOH HOH . C 3 HOH A 91 349 91 HOH HOH . C 3 HOH A 92 350 92 HOH HOH . C 3 HOH A 93 351 93 HOH HOH . C 3 HOH A 94 352 94 HOH HOH . C 3 HOH A 95 353 95 HOH HOH . C 3 HOH A 96 354 96 HOH HOH . C 3 HOH A 97 355 97 HOH HOH . C 3 HOH A 98 356 98 HOH HOH . C 3 HOH A 99 357 99 HOH HOH . C 3 HOH A 100 358 100 HOH HOH . C 3 HOH A 101 359 101 HOH HOH . C 3 HOH A 102 360 102 HOH HOH . C 3 HOH A 103 361 103 HOH HOH . C 3 HOH A 104 362 104 HOH HOH . C 3 HOH A 105 363 105 HOH HOH . C 3 HOH A 106 364 106 HOH HOH . C 3 HOH A 107 365 107 HOH HOH . C 3 HOH A 108 366 108 HOH HOH . C 3 HOH A 109 367 109 HOH HOH . C 3 HOH A 110 368 110 HOH HOH . C 3 HOH A 111 369 111 HOH HOH . C 3 HOH A 112 370 112 HOH HOH . C 3 HOH A 113 371 113 HOH HOH . C 3 HOH A 114 372 114 HOH HOH . C 3 HOH A 115 373 115 HOH HOH . C 3 HOH A 116 374 116 HOH HOH . C 3 HOH A 117 375 117 HOH HOH . C 3 HOH A 118 376 118 HOH HOH . C 3 HOH A 119 377 119 HOH HOH . C 3 HOH A 120 378 120 HOH HOH . C 3 HOH A 121 379 121 HOH HOH . C 3 HOH A 122 380 122 HOH HOH . C 3 HOH A 123 381 123 HOH HOH . C 3 HOH A 124 382 124 HOH HOH . C 3 HOH A 125 383 125 HOH HOH . C 3 HOH A 126 384 126 HOH HOH . C 3 HOH A 127 385 127 HOH HOH . C 3 HOH A 128 386 128 HOH HOH . C 3 HOH A 129 387 129 HOH HOH . C 3 HOH A 130 388 130 HOH HOH . C 3 HOH A 131 389 131 HOH HOH . C 3 HOH A 132 390 132 HOH HOH . C 3 HOH A 133 391 133 HOH HOH . C 3 HOH A 134 392 134 HOH HOH . C 3 HOH A 135 393 135 HOH HOH . C 3 HOH A 136 394 136 HOH HOH . C 3 HOH A 137 395 137 HOH HOH . C 3 HOH A 138 396 138 HOH HOH . C 3 HOH A 139 397 139 HOH HOH . C 3 HOH A 140 398 140 HOH HOH . C 3 HOH A 141 399 141 HOH HOH . C 3 HOH A 142 400 142 HOH HOH . C 3 HOH A 143 401 143 HOH HOH . C 3 HOH A 144 402 144 HOH HOH . C 3 HOH A 145 403 145 HOH HOH . C 3 HOH A 146 404 146 HOH HOH . C 3 HOH A 147 405 147 HOH HOH . C 3 HOH A 148 406 148 HOH HOH . C 3 HOH A 149 407 149 HOH HOH . C 3 HOH A 150 408 150 HOH HOH . C 3 HOH A 151 409 151 HOH HOH . C 3 HOH A 152 410 152 HOH HOH . C 3 HOH A 153 411 153 HOH HOH . C 3 HOH A 154 412 154 HOH HOH . C 3 HOH A 155 413 155 HOH HOH . C 3 HOH A 156 414 156 HOH HOH . C 3 HOH A 157 415 157 HOH HOH . C 3 HOH A 158 416 158 HOH HOH . C 3 HOH A 159 417 159 HOH HOH . C 3 HOH A 160 418 160 HOH HOH . C 3 HOH A 161 419 161 HOH HOH . C 3 HOH A 162 420 162 HOH HOH . C 3 HOH A 163 421 163 HOH HOH . C 3 HOH A 164 422 164 HOH HOH . C 3 HOH A 165 423 165 HOH HOH . C 3 HOH A 166 424 166 HOH HOH . C 3 HOH A 167 425 167 HOH HOH . C 3 HOH A 168 426 168 HOH HOH . C 3 HOH A 169 427 169 HOH HOH . C 3 HOH A 170 428 170 HOH HOH . C 3 HOH A 171 429 171 HOH HOH . C 3 HOH A 172 430 172 HOH HOH . C 3 HOH A 173 431 173 HOH HOH . C 3 HOH A 174 432 174 HOH HOH . C 3 HOH A 175 433 175 HOH HOH . C 3 HOH A 176 434 176 HOH HOH . C 3 HOH A 177 435 177 HOH HOH . C 3 HOH A 178 436 178 HOH HOH . C 3 HOH A 179 437 179 HOH HOH . C 3 HOH A 180 438 180 HOH HOH . C 3 HOH A 181 439 181 HOH HOH . C 3 HOH A 182 440 182 HOH HOH . C 3 HOH A 183 441 183 HOH HOH . C 3 HOH A 184 442 184 HOH HOH . C 3 HOH A 185 443 185 HOH HOH . C 3 HOH A 186 444 186 HOH HOH . C 3 HOH A 187 445 187 HOH HOH . C 3 HOH A 188 446 188 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -14.889 _atom_site.Cartn_y 8.858 _atom_site.Cartn_z -2.835 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #