data_3BP2 # _model_server_result.job_id eEIGDUtpwAAb4iZGlh6_bA _model_server_result.datetime_utc '2025-03-06 07:19:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":124}' # _entry.id 3BP2 # _exptl.entry_id 3BP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BP2 _cell.length_a 46.68 _cell.length_b 64.85 _cell.length_c 37.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 51 A CYS 51 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 A SG CYS 61 A CYS 61 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf7 A SG CYS 84 A CYS 84 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A C PYR 1 A PYR 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale2 A O PYR 1 A PYR 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale3 A CA PYR 1 A PYR 1 1_555 A CG ASP 59 A ASP 59 4_457 ? ? ? ? ? ? ? ? ? ? ? ? 1.279 ? covale ? covale4 A CB PYR 1 A PYR 1 1_555 A CG ASP 59 A ASP 59 4_457 ? ? ? ? ? ? ? ? ? ? ? ? 1.202 ? metalc ? metalc1 A O TYR 28 A TYR 28 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A O GLY 30 A GLY 30 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc3 A O GLY 32 A GLY 32 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc4 A OD1 ASP 49 A ASP 49 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc5 A OD2 ASP 49 A ASP 49 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 B CA CA . A CA 124 1_555 C O HOH . A HOH 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc7 B CA CA . A CA 124 1_555 C O HOH . A HOH 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BP2 _atom_sites.fract_transf_matrix[1][1] 0.021422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 124 2 CA CA . C 3 HOH A 1 125 3 HOH HOH . C 3 HOH A 2 126 4 HOH HOH . C 3 HOH A 3 127 5 HOH HOH . C 3 HOH A 4 128 6 HOH HOH . C 3 HOH A 5 129 7 HOH HOH . C 3 HOH A 6 130 8 HOH HOH . C 3 HOH A 7 131 9 HOH HOH . C 3 HOH A 8 132 10 HOH HOH . C 3 HOH A 9 133 11 HOH HOH . C 3 HOH A 10 134 12 HOH HOH . C 3 HOH A 11 135 13 HOH HOH . C 3 HOH A 12 136 14 HOH HOH . C 3 HOH A 13 137 15 HOH HOH . C 3 HOH A 14 138 16 HOH HOH . C 3 HOH A 15 139 17 HOH HOH . C 3 HOH A 16 140 18 HOH HOH . C 3 HOH A 17 141 19 HOH HOH . C 3 HOH A 18 142 20 HOH HOH . C 3 HOH A 19 143 21 HOH HOH . C 3 HOH A 20 144 22 HOH HOH . C 3 HOH A 21 145 23 HOH HOH . C 3 HOH A 22 146 24 HOH HOH . C 3 HOH A 23 147 25 HOH HOH . C 3 HOH A 24 148 26 HOH HOH . C 3 HOH A 25 149 27 HOH HOH . C 3 HOH A 26 150 28 HOH HOH . C 3 HOH A 27 151 29 HOH HOH . C 3 HOH A 28 152 30 HOH HOH . C 3 HOH A 29 153 31 HOH HOH . C 3 HOH A 30 154 32 HOH HOH . C 3 HOH A 31 155 33 HOH HOH . C 3 HOH A 32 156 34 HOH HOH . C 3 HOH A 33 157 35 HOH HOH . C 3 HOH A 34 158 36 HOH HOH . C 3 HOH A 35 159 37 HOH HOH . C 3 HOH A 36 160 38 HOH HOH . C 3 HOH A 37 161 39 HOH HOH . C 3 HOH A 38 162 40 HOH HOH . C 3 HOH A 39 163 41 HOH HOH . C 3 HOH A 40 164 42 HOH HOH . C 3 HOH A 41 165 43 HOH HOH . C 3 HOH A 42 166 44 HOH HOH . C 3 HOH A 43 167 45 HOH HOH . C 3 HOH A 44 168 46 HOH HOH . C 3 HOH A 45 169 47 HOH HOH . C 3 HOH A 46 170 48 HOH HOH . C 3 HOH A 47 171 49 HOH HOH . C 3 HOH A 48 172 50 HOH HOH . C 3 HOH A 49 173 51 HOH HOH . C 3 HOH A 50 174 52 HOH HOH . C 3 HOH A 51 175 53 HOH HOH . C 3 HOH A 52 176 54 HOH HOH . C 3 HOH A 53 177 55 HOH HOH . C 3 HOH A 54 178 56 HOH HOH . C 3 HOH A 55 179 57 HOH HOH . C 3 HOH A 56 180 58 HOH HOH . C 3 HOH A 57 181 59 HOH HOH . C 3 HOH A 58 182 60 HOH HOH . C 3 HOH A 59 183 61 HOH HOH . C 3 HOH A 60 184 62 HOH HOH . C 3 HOH A 61 185 63 HOH HOH . C 3 HOH A 62 186 64 HOH HOH . C 3 HOH A 63 187 65 HOH HOH . C 3 HOH A 64 188 66 HOH HOH . C 3 HOH A 65 189 67 HOH HOH . C 3 HOH A 66 190 68 HOH HOH . C 3 HOH A 67 191 69 HOH HOH . C 3 HOH A 68 192 70 HOH HOH . C 3 HOH A 69 193 71 HOH HOH . C 3 HOH A 70 194 72 HOH HOH . C 3 HOH A 71 195 73 HOH HOH . C 3 HOH A 72 196 74 HOH HOH . C 3 HOH A 73 197 75 HOH HOH . C 3 HOH A 74 198 76 HOH HOH . C 3 HOH A 75 199 77 HOH HOH . C 3 HOH A 76 200 78 HOH HOH . C 3 HOH A 77 201 79 HOH HOH . C 3 HOH A 78 202 80 HOH HOH . C 3 HOH A 79 203 81 HOH HOH . C 3 HOH A 80 204 82 HOH HOH . C 3 HOH A 81 205 83 HOH HOH . C 3 HOH A 82 206 84 HOH HOH . C 3 HOH A 83 207 85 HOH HOH . C 3 HOH A 84 208 86 HOH HOH . C 3 HOH A 85 209 87 HOH HOH . C 3 HOH A 86 210 88 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.48 _atom_site.Cartn_y 5.983 _atom_site.Cartn_z 24.82 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 124 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #