data_3BPF # _model_server_result.job_id '_AUXdD09QZcxrP7BdvH8cQ' _model_server_result.datetime_utc '2024-11-07 20:46:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":242}' # _entry.id 3BPF # _exptl.entry_id 3BPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BPF _cell.length_a 143.778 _cell.length_b 167.81 _cell.length_c 177.758 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,J 1 1 B,F,K 2 1 C,G,H,L 3 1 D,I,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 A CYS 39 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 73 A CYS 73 1_555 A SG CYS 114 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 99 A CYS 99 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 168 A CYS 168 1_555 A SG CYS 229 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 39 B CYS 39 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 73 B CYS 73 1_555 B SG CYS 114 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 B SG CYS 99 B CYS 99 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf8 B SG CYS 168 B CYS 168 1_555 B SG CYS 229 B CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf9 C SG CYS 39 C CYS 39 1_555 C SG CYS 80 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf10 C SG CYS 73 C CYS 73 1_555 C SG CYS 114 C CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf11 C SG CYS 99 C CYS 99 1_555 C SG CYS 119 C CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf12 D SG CYS 39 D CYS 39 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf13 D SG CYS 73 D CYS 73 1_555 D SG CYS 114 D CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf14 D SG CYS 99 D CYS 99 1_555 D SG CYS 119 D CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 D SG CYS 168 D CYS 168 1_555 D SG CYS 229 D CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A SG CYS 42 A CYS 42 1_555 E C2 E64 . A E64 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? covale ? covale2 B SG CYS 42 B CYS 42 1_555 F C2 E64 . B E64 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? covale ? covale3 C SG CYS 42 C CYS 42 1_555 G C2 E64 . C E64 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale4 D SG CYS 42 D CYS 42 1_555 I C2 E64 . D E64 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? # _chem_comp.formula 'C15 H30 N5 O5 1' _chem_comp.formula_weight 360.429 _chem_comp.id E64 _chem_comp.mon_nstd_flag . _chem_comp.name N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 E64 doub 83 n n C1 O2 E64 sing 84 n n C1 C2 E64 sing 85 n n O2 HO2 E64 sing 86 n n C2 C3 E64 sing 87 n n C2 H21 E64 sing 88 n n C2 H22 E64 sing 89 n n C3 O3 E64 sing 90 n n C3 C4 E64 sing 91 n n C3 H3 E64 sing 92 n n O3 HO3 E64 sing 93 n n C4 O4 E64 doub 94 n n C4 N1 E64 sing 95 n n N1 C6 E64 sing 96 n n N1 HN1 E64 sing 97 n n C6 C7 E64 sing 98 n n C6 C11 E64 sing 99 n n C6 H6 E64 sing 100 n n C7 C8 E64 sing 101 n n C7 H71 E64 sing 102 n n C7 H72 E64 sing 103 n n C8 C9 E64 sing 104 n n C8 C10 E64 sing 105 n n C8 H8 E64 sing 106 n n C9 H91 E64 sing 107 n n C9 H92 E64 sing 108 n n C9 H93 E64 sing 109 n n C10 H101 E64 sing 110 n n C10 H102 E64 sing 111 n n C10 H103 E64 sing 112 n n C11 O5 E64 doub 113 n n C11 N2 E64 sing 114 n n N2 C12 E64 sing 115 n n N2 HN2 E64 sing 116 n n C12 C13 E64 sing 117 n n C12 H121 E64 sing 118 n n C12 H122 E64 sing 119 n n C13 C14 E64 sing 120 n n C13 H131 E64 sing 121 n n C13 H132 E64 sing 122 n n C14 C15 E64 sing 123 n n C14 H141 E64 sing 124 n n C14 H142 E64 sing 125 n n C15 N3 E64 sing 126 n n C15 H151 E64 sing 127 n n C15 H152 E64 sing 128 n n N3 C16 E64 sing 129 n n N3 HN3 E64 sing 130 n n C16 N4 E64 sing 131 n n C16 N5 E64 doub 132 n n N4 HN41 E64 sing 133 n n N4 HN42 E64 sing 134 n n N5 HN51 E64 sing 135 n n N5 HN52 E64 sing 136 n n # _atom_sites.entry_id 3BPF _atom_sites.fract_transf_matrix[1][1] 0.006955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 E64 A 1 242 242 E64 E64 . F 2 E64 B 1 242 242 E64 E64 . G 2 E64 C 1 242 242 E64 E64 . H 3 GOL C 1 243 243 GOL GOL . I 2 E64 D 1 242 242 E64 E64 . J 4 HOH A 1 243 243 HOH HOH . J 4 HOH A 2 244 244 HOH HOH . J 4 HOH A 3 245 245 HOH HOH . J 4 HOH A 4 246 246 HOH HOH . J 4 HOH A 5 247 247 HOH HOH . J 4 HOH A 6 248 248 HOH HOH . J 4 HOH A 7 249 249 HOH HOH . J 4 HOH A 8 250 250 HOH HOH . J 4 HOH A 9 251 251 HOH HOH . J 4 HOH A 10 252 252 HOH HOH . K 4 HOH B 1 243 243 HOH HOH . K 4 HOH B 2 244 244 HOH HOH . K 4 HOH B 3 245 245 HOH HOH . K 4 HOH B 4 246 246 HOH HOH . K 4 HOH B 5 247 247 HOH HOH . K 4 HOH B 6 248 248 HOH HOH . K 4 HOH B 7 249 249 HOH HOH . K 4 HOH B 8 254 254 HOH HOH . K 4 HOH B 9 255 255 HOH HOH . K 4 HOH B 10 256 256 HOH HOH . K 4 HOH B 11 257 257 HOH HOH . K 4 HOH B 12 258 258 HOH HOH . K 4 HOH B 13 259 259 HOH HOH . L 4 HOH C 1 244 244 HOH HOH . L 4 HOH C 2 245 245 HOH HOH . L 4 HOH C 3 246 246 HOH HOH . L 4 HOH C 4 247 247 HOH HOH . L 4 HOH C 5 248 248 HOH HOH . L 4 HOH C 6 249 249 HOH HOH . L 4 HOH C 7 250 250 HOH HOH . L 4 HOH C 8 251 251 HOH HOH . L 4 HOH C 9 252 252 HOH HOH . L 4 HOH C 10 253 253 HOH HOH . L 4 HOH C 11 254 254 HOH HOH . L 4 HOH C 12 255 255 HOH HOH . L 4 HOH C 13 256 256 HOH HOH . L 4 HOH C 14 257 257 HOH HOH . L 4 HOH C 15 258 258 HOH HOH . M 4 HOH D 1 243 243 HOH HOH . M 4 HOH D 2 244 244 HOH HOH . M 4 HOH D 3 245 245 HOH HOH . M 4 HOH D 4 246 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E64 . . . I 2 -36.298 -24.442 -38.624 1 72.22 ? C1 E64 242 D 1 HETATM 2 O O1 E64 . . . I 2 -36.864 -24.675 -39.714 1 73.24 ? O1 E64 242 D 1 HETATM 3 O O2 E64 . . . I 2 -36.338 -25.174 -37.608 1 71.95 ? O2 E64 242 D 1 HETATM 4 C C2 E64 . . . I 2 -35.472 -23.15 -38.539 1 70.77 ? C2 E64 242 D 1 HETATM 5 C C3 E64 . . . I 2 -36.141 -22.136 -37.607 1 71.53 ? C3 E64 242 D 1 HETATM 6 O O3 E64 . . . I 2 -37.365 -21.671 -38.181 1 71.44 ? O3 E64 242 D 1 HETATM 7 C C4 E64 . . . I 2 -35.158 -20.984 -37.326 1 71.57 ? C4 E64 242 D 1 HETATM 8 O O4 E64 . . . I 2 -34.492 -20.996 -36.297 1 71.89 ? O4 E64 242 D 1 HETATM 9 N N1 E64 . . . I 2 -35.062 -20.012 -38.232 1 71.57 ? N1 E64 242 D 1 HETATM 10 C C6 E64 . . . I 2 -34.134 -18.876 -38.039 1 72.11 ? C6 E64 242 D 1 HETATM 11 C C7 E64 . . . I 2 -33.189 -18.757 -39.247 1 71.22 ? C7 E64 242 D 1 HETATM 12 C C8 E64 . . . I 2 -31.745 -19.014 -38.809 1 70.35 ? C8 E64 242 D 1 HETATM 13 C C9 E64 . . . I 2 -31.477 -20.515 -38.678 1 69.81 ? C9 E64 242 D 1 HETATM 14 C C10 E64 . . . I 2 -30.746 -18.33 -39.748 1 69.68 ? C10 E64 242 D 1 HETATM 15 C C11 E64 . . . I 2 -34.893 -17.558 -37.832 1 73.04 ? C11 E64 242 D 1 HETATM 16 O O5 E64 . . . I 2 -35.724 -17.178 -38.651 1 73.93 ? O5 E64 242 D 1 HETATM 17 N N2 E64 . . . I 2 -34.58 -16.877 -36.731 1 73.92 ? N2 E64 242 D 1 HETATM 18 C C12 E64 . . . I 2 -35.214 -15.592 -36.384 1 74.3 ? C12 E64 242 D 1 HETATM 19 C C13 E64 . . . I 2 -36.652 -15.821 -35.917 1 75.51 ? C13 E64 242 D 1 HETATM 20 C C14 E64 . . . I 2 -37.138 -14.677 -35.02 1 76.89 ? C14 E64 242 D 1 HETATM 21 C C15 E64 . . . I 2 -38.332 -15.14 -34.17 1 78.32 ? C15 E64 242 D 1 HETATM 22 N N3 E64 . . . I 2 -39.266 -14.027 -33.889 1 78.76 ? N3 E64 242 D 1 HETATM 23 C C16 E64 . . . I 2 -40.447 -14.214 -33.275 1 78.99 ? C16 E64 242 D 1 HETATM 24 N N4 E64 . . . I 2 -40.862 -15.424 -32.871 1 79.02 ? N4 E64 242 D 1 HETATM 25 N N5 E64 . . . I 2 -41.243 -13.169 -33.051 1 78.93 ? N5 E64 242 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #