data_3BPF
#
_model_server_result.job_id            bLgsGOv177ViVHB6jWyjnQ 
_model_server_result.datetime_utc      '2024-11-07 20:50:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bpf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":243}' 
#
_entry.id    3BPF 
#
_exptl.entry_id    3BPF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BPF 
_cell.length_a            143.778 
_cell.length_b            167.81 
_cell.length_c            177.758 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BPF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,J 1 1 
B,F,K 2 1 
C,G,H,L 3 1 
D,I,M 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 39 A CYS 39 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 73 A CYS 73 1_555 A SG CYS 114 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 99 A CYS 99 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 A SG CYS 168 A CYS 168 1_555 A SG CYS 229 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 39 B CYS 39 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 73 B CYS 73 1_555 B SG CYS 114 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf7 B SG CYS 99 B CYS 99 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf8 B SG CYS 168 B CYS 168 1_555 B SG CYS 229 B CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf9 C SG CYS 39 C CYS 39 1_555 C SG CYS 80 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf10 C SG CYS 73 C CYS 73 1_555 C SG CYS 114 C CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf11 C SG CYS 99 C CYS 99 1_555 C SG CYS 119 C CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf12 D SG CYS 39 D CYS 39 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf13 D SG CYS 73 D CYS 73 1_555 D SG CYS 114 D CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf14 D SG CYS 99 D CYS 99 1_555 D SG CYS 119 D CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf15 D SG CYS 168 D CYS 168 1_555 D SG CYS 229 D CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A SG CYS 42 A CYS 42 1_555 E C2 E64 . A E64 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
covale ? covale2 B SG CYS 42 B CYS 42 1_555 F C2 E64 . B E64 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? 
covale ? covale3 C SG CYS 42 C CYS 42 1_555 G C2 E64 . C E64 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? 
covale ? covale4 D SG CYS 42 D CYS 42 1_555 I C2 E64 . D E64 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 183 n n 
C1 C2 GOL sing 184 n n 
C1 H11 GOL sing 185 n n 
C1 H12 GOL sing 186 n n 
O1 HO1 GOL sing 187 n n 
C2 O2 GOL sing 188 n n 
C2 C3 GOL sing 189 n n 
C2 H2 GOL sing 190 n n 
O2 HO2 GOL sing 191 n n 
C3 O3 GOL sing 192 n n 
C3 H31 GOL sing 193 n n 
C3 H32 GOL sing 194 n n 
O3 HO3 GOL sing 195 n n 
#
_atom_sites.entry_id                     3BPF 
_atom_sites.fract_transf_matrix[1][1]    0.006955 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005959 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005626 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 E64 A 1 242 242 E64 E64 . 
F 2 E64 B 1 242 242 E64 E64 . 
G 2 E64 C 1 242 242 E64 E64 . 
H 3 GOL C 1 243 243 GOL GOL . 
I 2 E64 D 1 242 242 E64 E64 . 
J 4 HOH A 1 243 243 HOH HOH . 
J 4 HOH A 2 244 244 HOH HOH . 
J 4 HOH A 3 245 245 HOH HOH . 
J 4 HOH A 4 246 246 HOH HOH . 
J 4 HOH A 5 247 247 HOH HOH . 
J 4 HOH A 6 248 248 HOH HOH . 
J 4 HOH A 7 249 249 HOH HOH . 
J 4 HOH A 8 250 250 HOH HOH . 
J 4 HOH A 9 251 251 HOH HOH . 
J 4 HOH A 10 252 252 HOH HOH . 
K 4 HOH B 1 243 243 HOH HOH . 
K 4 HOH B 2 244 244 HOH HOH . 
K 4 HOH B 3 245 245 HOH HOH . 
K 4 HOH B 4 246 246 HOH HOH . 
K 4 HOH B 5 247 247 HOH HOH . 
K 4 HOH B 6 248 248 HOH HOH . 
K 4 HOH B 7 249 249 HOH HOH . 
K 4 HOH B 8 254 254 HOH HOH . 
K 4 HOH B 9 255 255 HOH HOH . 
K 4 HOH B 10 256 256 HOH HOH . 
K 4 HOH B 11 257 257 HOH HOH . 
K 4 HOH B 12 258 258 HOH HOH . 
K 4 HOH B 13 259 259 HOH HOH . 
L 4 HOH C 1 244 244 HOH HOH . 
L 4 HOH C 2 245 245 HOH HOH . 
L 4 HOH C 3 246 246 HOH HOH . 
L 4 HOH C 4 247 247 HOH HOH . 
L 4 HOH C 5 248 248 HOH HOH . 
L 4 HOH C 6 249 249 HOH HOH . 
L 4 HOH C 7 250 250 HOH HOH . 
L 4 HOH C 8 251 251 HOH HOH . 
L 4 HOH C 9 252 252 HOH HOH . 
L 4 HOH C 10 253 253 HOH HOH . 
L 4 HOH C 11 254 254 HOH HOH . 
L 4 HOH C 12 255 255 HOH HOH . 
L 4 HOH C 13 256 256 HOH HOH . 
L 4 HOH C 14 257 257 HOH HOH . 
L 4 HOH C 15 258 258 HOH HOH . 
M 4 HOH D 1 243 243 HOH HOH . 
M 4 HOH D 2 244 244 HOH HOH . 
M 4 HOH D 3 245 245 HOH HOH . 
M 4 HOH D 4 246 246 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 -99.32 -10.886 -18.156 1 124.39 ? C1 GOL 243 C 1 
HETATM 2 O O1 GOL . . . H 3 -99.787 -12.197 -17.913 1 124.37 ? O1 GOL 243 C 1 
HETATM 3 C C2 GOL . . . H 3 -99.782 -9.934 -17.054 1 124.24 ? C2 GOL 243 C 1 
HETATM 4 O O2 GOL . . . H 3 -101.08 -10.272 -16.618 1 124.4 ? O2 GOL 243 C 1 
HETATM 5 C C3 GOL . . . H 3 -99.788 -8.496 -17.56 1 123.97 ? C3 GOL 243 C 1 
HETATM 6 O O3 GOL . . . H 3 -99.836 -7.607 -16.466 1 123.66 ? O3 GOL 243 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#