data_3BPN
#
_model_server_result.job_id            qUGOGA_EbixddHUcP1cwOQ 
_model_server_result.datetime_utc      '2024-12-22 04:13:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bpn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    3BPN 
#
_exptl.entry_id    3BPN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.31 
_cell.angle_gamma         90 
_cell.entry_id            3BPN 
_cell.length_a            61.64 
_cell.length_b            62.841 
_cell.length_c            115.125 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BPN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 24 A CYS 24 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
disulf ? disulf3 A SG CYS 46 A CYS 46 1_555 A SG CYS 99 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 B SG CYS 12 B CYS 9 1_555 B SG CYS 22 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf5 B SG CYS 32 B CYS 29 1_555 B SG CYS 62 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 B SG CYS 52 B CYS 49 1_555 B SG CYS 64 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 C SG CYS 34 C CYS 62 1_555 C SG CYS 74 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf8 C SG CYS 67 C CYS 95 1_555 C SG CYS 89 C CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf9 C SG CYS 106 C CYS 134 1_555 C SG CYS 116 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf10 C SG CYS 145 C CYS 173 1_555 C SG CYS 157 C CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf11 C SG CYS 229 C CYS 257 1_555 C SG CYS 292 C CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf12 C SG CYS 254 C CYS 282 1_555 C SG CYS 268 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 B ND2 ASN 106 B ASN 103 1_555 D C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 B ND2 ASN 187 B ASN 184 1_555 E C1 NAG . B NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3BPN 
_atom_sites.fract_transf_matrix[1][1]    0.016223 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001793 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015913 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG B 1 901 901 NAG NAG . 
E 4 NAG B 1 911 911 NAG NAG . 
F 5 HOH A 1 130 8 HOH HOH . 
F 5 HOH A 2 131 16 HOH HOH . 
F 5 HOH A 3 132 18 HOH HOH . 
F 5 HOH A 4 133 45 HOH HOH . 
F 5 HOH A 5 134 65 HOH HOH . 
F 5 HOH A 6 135 89 HOH HOH . 
F 5 HOH A 7 136 90 HOH HOH . 
F 5 HOH A 8 137 91 HOH HOH . 
F 5 HOH A 9 138 92 HOH HOH . 
G 5 HOH B 1 343 1 HOH HOH . 
G 5 HOH B 2 912 2 HOH HOH . 
G 5 HOH B 3 913 5 HOH HOH . 
G 5 HOH B 4 914 7 HOH HOH . 
G 5 HOH B 5 915 11 HOH HOH . 
G 5 HOH B 6 916 12 HOH HOH . 
G 5 HOH B 7 917 21 HOH HOH . 
G 5 HOH B 8 918 23 HOH HOH . 
G 5 HOH B 9 919 26 HOH HOH . 
G 5 HOH B 10 920 29 HOH HOH . 
G 5 HOH B 11 921 30 HOH HOH . 
G 5 HOH B 12 922 40 HOH HOH . 
G 5 HOH B 13 923 41 HOH HOH . 
G 5 HOH B 14 924 55 HOH HOH . 
G 5 HOH B 15 925 57 HOH HOH . 
G 5 HOH B 16 926 60 HOH HOH . 
G 5 HOH B 17 927 67 HOH HOH . 
G 5 HOH B 18 928 70 HOH HOH . 
G 5 HOH B 19 929 93 HOH HOH . 
G 5 HOH B 20 930 94 HOH HOH . 
G 5 HOH B 21 931 95 HOH HOH . 
H 5 HOH C 1 344 9 HOH HOH . 
H 5 HOH C 2 345 13 HOH HOH . 
H 5 HOH C 3 346 15 HOH HOH . 
H 5 HOH C 4 347 17 HOH HOH . 
H 5 HOH C 5 348 19 HOH HOH . 
H 5 HOH C 6 349 27 HOH HOH . 
H 5 HOH C 7 350 38 HOH HOH . 
H 5 HOH C 8 351 42 HOH HOH . 
H 5 HOH C 9 352 47 HOH HOH . 
H 5 HOH C 10 353 50 HOH HOH . 
H 5 HOH C 11 354 51 HOH HOH . 
H 5 HOH C 12 355 56 HOH HOH . 
H 5 HOH C 13 356 61 HOH HOH . 
H 5 HOH C 14 357 64 HOH HOH . 
H 5 HOH C 15 358 69 HOH HOH . 
H 5 HOH C 16 359 77 HOH HOH . 
H 5 HOH C 17 360 79 HOH HOH . 
H 5 HOH C 18 361 80 HOH HOH . 
H 5 HOH C 19 362 81 HOH HOH . 
H 5 HOH C 20 363 84 HOH HOH . 
H 5 HOH C 21 364 85 HOH HOH . 
H 5 HOH C 22 365 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 -9.203 -13.747 37.44 1 62.56 ? C1 NAG 901 B 1 
HETATM 2 C C2 NAG . . . D 4 -9.614 -14.775 36.362 1 65.03 ? C2 NAG 901 B 1 
HETATM 3 C C3 NAG . . . D 4 -8.76 -14.624 35.092 1 64.94 ? C3 NAG 901 B 1 
HETATM 4 C C4 NAG . . . D 4 -8.591 -13.156 34.67 1 64.86 ? C4 NAG 901 B 1 
HETATM 5 C C5 NAG . . . D 4 -8.148 -12.298 35.852 1 64.2 ? C5 NAG 901 B 1 
HETATM 6 C C6 NAG . . . D 4 -8 -10.833 35.447 1 63.69 ? C6 NAG 901 B 1 
HETATM 7 C C7 NAG . . . D 4 -9.88 -17.261 36.312 1 67.98 ? C7 NAG 901 B 1 
HETATM 8 C C8 NAG . . . D 4 -8.8 -18.298 35.948 1 67.43 ? C8 NAG 901 B 1 
HETATM 9 N N2 NAG . . . D 4 -9.474 -16.126 36.907 1 66.83 ? N2 NAG 901 B 1 
HETATM 10 O O3 NAG . . . D 4 -9.319 -15.384 34.033 1 64.58 ? O3 NAG 901 B 1 
HETATM 11 O O4 NAG . . . D 4 -7.621 -13.048 33.65 1 66.44 ? O4 NAG 901 B 1 
HETATM 12 O O5 NAG . . . D 4 -9.102 -12.436 36.892 1 63.41 ? O5 NAG 901 B 1 
HETATM 13 O O6 NAG . . . D 4 -7.371 -10.118 36.51 1 63.18 ? O6 NAG 901 B 1 
HETATM 14 O O7 NAG . . . D 4 -11.083 -17.479 36.075 1 68.82 ? O7 NAG 901 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#