data_3BPN # _model_server_result.job_id UYheTmUYFWlgRzZwlQOsNQ _model_server_result.datetime_utc '2024-11-04 22:16:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bpn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":911}' # _entry.id 3BPN # _exptl.entry_id 3BPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.31 _cell.angle_gamma 90 _cell.entry_id 3BPN _cell.length_a 61.64 _cell.length_b 62.841 _cell.length_c 115.125 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 24 A CYS 24 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? disulf ? disulf3 A SG CYS 46 A CYS 46 1_555 A SG CYS 99 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 B SG CYS 12 B CYS 9 1_555 B SG CYS 22 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 B SG CYS 32 B CYS 29 1_555 B SG CYS 62 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 52 B CYS 49 1_555 B SG CYS 64 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 C SG CYS 34 C CYS 62 1_555 C SG CYS 74 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf8 C SG CYS 67 C CYS 95 1_555 C SG CYS 89 C CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf9 C SG CYS 106 C CYS 134 1_555 C SG CYS 116 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf10 C SG CYS 145 C CYS 173 1_555 C SG CYS 157 C CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf11 C SG CYS 229 C CYS 257 1_555 C SG CYS 292 C CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 C SG CYS 254 C CYS 282 1_555 C SG CYS 268 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B ND2 ASN 106 B ASN 103 1_555 D C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 B ND2 ASN 187 B ASN 184 1_555 E C1 NAG . B NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3BPN _atom_sites.fract_transf_matrix[1][1] 0.016223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001793 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG B 1 901 901 NAG NAG . E 4 NAG B 1 911 911 NAG NAG . F 5 HOH A 1 130 8 HOH HOH . F 5 HOH A 2 131 16 HOH HOH . F 5 HOH A 3 132 18 HOH HOH . F 5 HOH A 4 133 45 HOH HOH . F 5 HOH A 5 134 65 HOH HOH . F 5 HOH A 6 135 89 HOH HOH . F 5 HOH A 7 136 90 HOH HOH . F 5 HOH A 8 137 91 HOH HOH . F 5 HOH A 9 138 92 HOH HOH . G 5 HOH B 1 343 1 HOH HOH . G 5 HOH B 2 912 2 HOH HOH . G 5 HOH B 3 913 5 HOH HOH . G 5 HOH B 4 914 7 HOH HOH . G 5 HOH B 5 915 11 HOH HOH . G 5 HOH B 6 916 12 HOH HOH . G 5 HOH B 7 917 21 HOH HOH . G 5 HOH B 8 918 23 HOH HOH . G 5 HOH B 9 919 26 HOH HOH . G 5 HOH B 10 920 29 HOH HOH . G 5 HOH B 11 921 30 HOH HOH . G 5 HOH B 12 922 40 HOH HOH . G 5 HOH B 13 923 41 HOH HOH . G 5 HOH B 14 924 55 HOH HOH . G 5 HOH B 15 925 57 HOH HOH . G 5 HOH B 16 926 60 HOH HOH . G 5 HOH B 17 927 67 HOH HOH . G 5 HOH B 18 928 70 HOH HOH . G 5 HOH B 19 929 93 HOH HOH . G 5 HOH B 20 930 94 HOH HOH . G 5 HOH B 21 931 95 HOH HOH . H 5 HOH C 1 344 9 HOH HOH . H 5 HOH C 2 345 13 HOH HOH . H 5 HOH C 3 346 15 HOH HOH . H 5 HOH C 4 347 17 HOH HOH . H 5 HOH C 5 348 19 HOH HOH . H 5 HOH C 6 349 27 HOH HOH . H 5 HOH C 7 350 38 HOH HOH . H 5 HOH C 8 351 42 HOH HOH . H 5 HOH C 9 352 47 HOH HOH . H 5 HOH C 10 353 50 HOH HOH . H 5 HOH C 11 354 51 HOH HOH . H 5 HOH C 12 355 56 HOH HOH . H 5 HOH C 13 356 61 HOH HOH . H 5 HOH C 14 357 64 HOH HOH . H 5 HOH C 15 358 69 HOH HOH . H 5 HOH C 16 359 77 HOH HOH . H 5 HOH C 17 360 79 HOH HOH . H 5 HOH C 18 361 80 HOH HOH . H 5 HOH C 19 362 81 HOH HOH . H 5 HOH C 20 363 84 HOH HOH . H 5 HOH C 21 364 85 HOH HOH . H 5 HOH C 22 365 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 11.053 7.183 42.409 1 59.94 ? C1 NAG 911 B 1 HETATM 2 C C2 NAG . . . E 4 12.368 7.784 42.952 1 62.6 ? C2 NAG 911 B 1 HETATM 3 C C3 NAG . . . E 4 12.164 9.085 43.751 1 63.24 ? C3 NAG 911 B 1 HETATM 4 C C4 NAG . . . E 4 11.23 10.069 43.024 1 63.37 ? C4 NAG 911 B 1 HETATM 5 C C5 NAG . . . E 4 9.969 9.357 42.49 1 62.7 ? C5 NAG 911 B 1 HETATM 6 C C6 NAG . . . E 4 9.135 10.27 41.585 1 62.57 ? C6 NAG 911 B 1 HETATM 7 C C7 NAG . . . E 4 14.333 6.436 43.464 1 63.91 ? C7 NAG 911 B 1 HETATM 8 C C8 NAG . . . E 4 15.435 7.038 44.302 1 64.01 ? C8 NAG 911 B 1 HETATM 9 N N2 NAG . . . E 4 13.089 6.808 43.767 1 62.93 ? N2 NAG 911 B 1 HETATM 10 O O3 NAG . . . E 4 13.411 9.708 44.01 1 63.84 ? O3 NAG 911 B 1 HETATM 11 O O4 NAG . . . E 4 10.885 11.117 43.918 1 63.92 ? O4 NAG 911 B 1 HETATM 12 O O5 NAG . . . E 4 10.287 8.182 41.738 1 61.35 ? O5 NAG 911 B 1 HETATM 13 O O6 NAG . . . E 4 8.518 11.283 42.428 1 62.84 ? O6 NAG 911 B 1 HETATM 14 O O7 NAG . . . E 4 14.593 5.644 42.551 1 63.84 ? O7 NAG 911 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #