data_3BPS # _model_server_result.job_id HWZFEp39SOtGft0TvZWMiA _model_server_result.datetime_utc '2025-03-09 01:52:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3BPS # _exptl.entry_id 3BPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BPS _cell.length_a 116.952 _cell.length_b 116.952 _cell.length_c 134.878 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 71 A CYS 223 1_555 B SG CYS 103 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf2 B SG CYS 171 A CYS 323 1_555 B SG CYS 206 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf3 B SG CYS 223 A CYS 375 1_555 B SG CYS 226 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf4 B SG CYS 305 A CYS 457 1_555 B SG CYS 375 A CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 B SG CYS 325 A CYS 477 1_555 B SG CYS 374 A CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf6 B SG CYS 334 A CYS 486 1_555 B SG CYS 357 A CYS 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf7 B SG CYS 456 A CYS 608 1_555 B SG CYS 527 A CYS 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf8 B SG CYS 474 A CYS 626 1_555 B SG CYS 526 A CYS 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf9 B SG CYS 483 A CYS 635 1_555 B SG CYS 502 A CYS 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf10 C SG CYS 8 E CYS 297 1_555 C SG CYS 19 E CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf11 C SG CYS 15 E CYS 304 1_555 C SG CYS 28 E CYS 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf12 C SG CYS 30 E CYS 319 1_555 C SG CYS 42 E CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc1 D CA CA . E CA 1 1_555 C O MET 3 E MET 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc2 D CA CA . E CA 1 1_555 C O THR 5 E THR 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc3 D CA CA . E CA 1 1_555 C OE1 GLU 7 E GLU 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 D CA CA . E CA 1 1_555 C OD1 ASP 21 E ASP 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc5 D CA CA . E CA 1 1_555 C O LEU 22 E LEU 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 D CA CA . E CA 1 1_555 C O GLY 25 E GLY 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc7 D CA CA . E CA 1 1_555 G O HOH . E HOH 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BPS _atom_sites.fract_transf_matrix[1][1] 0.008551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA E 1 1 1 CA CA . E 5 HOH P 1 153 14 HOH HOH . E 5 HOH P 2 154 20 HOH HOH . E 5 HOH P 3 155 25 HOH HOH . E 5 HOH P 4 156 39 HOH HOH . E 5 HOH P 5 157 44 HOH HOH . E 5 HOH P 6 158 60 HOH HOH . E 5 HOH P 7 159 64 HOH HOH . E 5 HOH P 8 160 65 HOH HOH . E 5 HOH P 9 161 72 HOH HOH . E 5 HOH P 10 162 77 HOH HOH . E 5 HOH P 11 163 81 HOH HOH . E 5 HOH P 12 164 85 HOH HOH . E 5 HOH P 13 165 88 HOH HOH . E 5 HOH P 14 166 90 HOH HOH . E 5 HOH P 15 167 91 HOH HOH . E 5 HOH P 16 168 94 HOH HOH . E 5 HOH P 17 169 110 HOH HOH . E 5 HOH P 18 170 122 HOH HOH . E 5 HOH P 19 171 124 HOH HOH . E 5 HOH P 20 172 127 HOH HOH . F 5 HOH A 1 2 2 HOH HOH . F 5 HOH A 2 3 3 HOH HOH . F 5 HOH A 3 4 4 HOH HOH . F 5 HOH A 4 5 5 HOH HOH . F 5 HOH A 5 6 6 HOH HOH . F 5 HOH A 6 7 7 HOH HOH . F 5 HOH A 7 8 8 HOH HOH . F 5 HOH A 8 9 9 HOH HOH . F 5 HOH A 9 10 10 HOH HOH . F 5 HOH A 10 11 11 HOH HOH . F 5 HOH A 11 12 12 HOH HOH . F 5 HOH A 12 13 13 HOH HOH . F 5 HOH A 13 15 15 HOH HOH . F 5 HOH A 14 16 16 HOH HOH . F 5 HOH A 15 17 17 HOH HOH . F 5 HOH A 16 18 18 HOH HOH . F 5 HOH A 17 19 19 HOH HOH . F 5 HOH A 18 21 21 HOH HOH . F 5 HOH A 19 22 22 HOH HOH . F 5 HOH A 20 23 23 HOH HOH . F 5 HOH A 21 24 24 HOH HOH . F 5 HOH A 22 26 26 HOH HOH . F 5 HOH A 23 27 27 HOH HOH . F 5 HOH A 24 28 28 HOH HOH . F 5 HOH A 25 29 29 HOH HOH . F 5 HOH A 26 30 30 HOH HOH . F 5 HOH A 27 31 31 HOH HOH . F 5 HOH A 28 32 32 HOH HOH . F 5 HOH A 29 33 33 HOH HOH . F 5 HOH A 30 34 34 HOH HOH . F 5 HOH A 31 35 35 HOH HOH . F 5 HOH A 32 36 36 HOH HOH . F 5 HOH A 33 37 37 HOH HOH . F 5 HOH A 34 38 38 HOH HOH . F 5 HOH A 35 40 40 HOH HOH . F 5 HOH A 36 41 41 HOH HOH . F 5 HOH A 37 42 42 HOH HOH . F 5 HOH A 38 43 43 HOH HOH . F 5 HOH A 39 45 45 HOH HOH . F 5 HOH A 40 46 46 HOH HOH . F 5 HOH A 41 47 47 HOH HOH . F 5 HOH A 42 48 48 HOH HOH . F 5 HOH A 43 49 49 HOH HOH . F 5 HOH A 44 50 50 HOH HOH . F 5 HOH A 45 51 51 HOH HOH . F 5 HOH A 46 52 52 HOH HOH . F 5 HOH A 47 53 53 HOH HOH . F 5 HOH A 48 54 54 HOH HOH . F 5 HOH A 49 55 55 HOH HOH . F 5 HOH A 50 57 57 HOH HOH . F 5 HOH A 51 58 58 HOH HOH . F 5 HOH A 52 59 59 HOH HOH . F 5 HOH A 53 61 61 HOH HOH . F 5 HOH A 54 62 62 HOH HOH . F 5 HOH A 55 63 63 HOH HOH . F 5 HOH A 56 66 66 HOH HOH . F 5 HOH A 57 67 67 HOH HOH . F 5 HOH A 58 68 68 HOH HOH . F 5 HOH A 59 69 69 HOH HOH . F 5 HOH A 60 70 70 HOH HOH . F 5 HOH A 61 71 71 HOH HOH . F 5 HOH A 62 73 73 HOH HOH . F 5 HOH A 63 74 74 HOH HOH . F 5 HOH A 64 75 75 HOH HOH . F 5 HOH A 65 76 76 HOH HOH . F 5 HOH A 66 78 78 HOH HOH . F 5 HOH A 67 79 79 HOH HOH . F 5 HOH A 68 80 80 HOH HOH . F 5 HOH A 69 82 82 HOH HOH . F 5 HOH A 70 83 83 HOH HOH . F 5 HOH A 71 84 84 HOH HOH . F 5 HOH A 72 86 86 HOH HOH . F 5 HOH A 73 87 87 HOH HOH . F 5 HOH A 74 89 89 HOH HOH . F 5 HOH A 75 92 92 HOH HOH . F 5 HOH A 76 93 93 HOH HOH . F 5 HOH A 77 95 95 HOH HOH . F 5 HOH A 78 96 96 HOH HOH . F 5 HOH A 79 97 97 HOH HOH . F 5 HOH A 80 98 98 HOH HOH . F 5 HOH A 81 99 99 HOH HOH . F 5 HOH A 82 100 100 HOH HOH . F 5 HOH A 83 101 101 HOH HOH . F 5 HOH A 84 102 102 HOH HOH . F 5 HOH A 85 103 103 HOH HOH . F 5 HOH A 86 105 105 HOH HOH . F 5 HOH A 87 106 106 HOH HOH . F 5 HOH A 88 107 107 HOH HOH . F 5 HOH A 89 108 108 HOH HOH . F 5 HOH A 90 109 109 HOH HOH . F 5 HOH A 91 111 111 HOH HOH . F 5 HOH A 92 112 112 HOH HOH . F 5 HOH A 93 113 113 HOH HOH . F 5 HOH A 94 114 114 HOH HOH . F 5 HOH A 95 115 115 HOH HOH . F 5 HOH A 96 116 116 HOH HOH . F 5 HOH A 97 117 117 HOH HOH . F 5 HOH A 98 118 118 HOH HOH . F 5 HOH A 99 119 119 HOH HOH . F 5 HOH A 100 120 120 HOH HOH . F 5 HOH A 101 121 121 HOH HOH . F 5 HOH A 102 125 125 HOH HOH . F 5 HOH A 103 126 126 HOH HOH . F 5 HOH A 104 128 128 HOH HOH . F 5 HOH A 105 129 129 HOH HOH . G 5 HOH E 1 373 1 HOH HOH . G 5 HOH E 2 374 56 HOH HOH . G 5 HOH E 3 375 104 HOH HOH . G 5 HOH E 4 376 123 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 21.311 _atom_site.Cartn_y -40.335 _atom_site.Cartn_z -6.081 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #