data_3BPX # _model_server_result.job_id 1lT1j3NU8fnUhDtcB6rOOQ _model_server_result.datetime_utc '2025-08-31 00:55:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":147}' # _entry.id 3BPX # _exptl.entry_id 3BPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BPX _cell.length_a 40.109 _cell.length_b 51.527 _cell.length_c 139.243 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 35 A THR 32 1_555 C NA NA . A NA 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc2 A O ILE 45 A ILE 42 1_555 D NA NA . A NA 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc3 A OD1 ASP 54 A ASP 51 1_555 F NA NA . A NA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc4 A N TYR 92 A TYR 89 1_555 F NA NA . A NA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc5 A N ARG 98 A ARG 95 1_555 E NA NA . A NA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc6 A OE1 GLU 111 A GLU 108 1_555 H NA NA . B NA 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc7 A OE2 GLU 115 A GLU 112 1_555 H NA NA . B NA 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc8 D NA NA . A NA 147 1_555 K O HOH . A HOH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc9 E NA NA . A NA 148 1_555 K O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc10 F NA NA . A NA 149 1_555 K O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc11 B N LYS 11 B LYS 8 1_555 H NA NA . B NA 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc12 B OG1 THR 35 B THR 32 1_555 I NA NA . B NA 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc13 I NA NA . B NA 147 1_555 L O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc14 I NA NA . B NA 147 1_555 L O HOH . B HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BPX _atom_sites.fract_transf_matrix[1][1] 0.024932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 146 146 NA NA . D 2 NA A 1 147 147 NA NA . E 2 NA A 1 148 148 NA NA . F 2 NA A 1 149 149 NA NA . G 3 SAL A 1 257 257 SAL SAL . H 2 NA B 1 146 146 NA NA . I 2 NA B 1 147 147 NA NA . J 3 SAL B 1 258 258 SAL SAL . K 4 HOH A 1 258 258 HOH HOH . K 4 HOH A 2 259 259 HOH HOH . K 4 HOH A 3 260 260 HOH HOH . K 4 HOH A 4 261 261 HOH HOH . K 4 HOH A 5 262 262 HOH HOH . K 4 HOH A 6 263 263 HOH HOH . K 4 HOH A 7 264 264 HOH HOH . K 4 HOH A 8 265 265 HOH HOH . K 4 HOH A 9 266 266 HOH HOH . K 4 HOH A 10 267 267 HOH HOH . K 4 HOH A 11 268 268 HOH HOH . K 4 HOH A 12 269 269 HOH HOH . K 4 HOH A 13 270 270 HOH HOH . K 4 HOH A 14 271 271 HOH HOH . K 4 HOH A 15 272 272 HOH HOH . K 4 HOH A 16 273 273 HOH HOH . K 4 HOH A 17 274 274 HOH HOH . K 4 HOH A 18 275 275 HOH HOH . K 4 HOH A 19 276 276 HOH HOH . K 4 HOH A 20 277 277 HOH HOH . K 4 HOH A 21 278 278 HOH HOH . K 4 HOH A 22 279 279 HOH HOH . K 4 HOH A 23 280 280 HOH HOH . K 4 HOH A 24 281 281 HOH HOH . K 4 HOH A 25 282 282 HOH HOH . K 4 HOH A 26 283 283 HOH HOH . K 4 HOH A 27 284 284 HOH HOH . K 4 HOH A 28 285 285 HOH HOH . K 4 HOH A 29 286 286 HOH HOH . K 4 HOH A 30 287 287 HOH HOH . K 4 HOH A 31 288 288 HOH HOH . K 4 HOH A 32 289 289 HOH HOH . K 4 HOH A 33 290 290 HOH HOH . K 4 HOH A 34 291 291 HOH HOH . K 4 HOH A 35 292 292 HOH HOH . K 4 HOH A 36 293 293 HOH HOH . K 4 HOH A 37 294 294 HOH HOH . K 4 HOH A 38 295 295 HOH HOH . K 4 HOH A 39 296 296 HOH HOH . K 4 HOH A 40 297 297 HOH HOH . K 4 HOH A 41 298 298 HOH HOH . K 4 HOH A 42 299 299 HOH HOH . K 4 HOH A 43 300 300 HOH HOH . K 4 HOH A 44 301 301 HOH HOH . K 4 HOH A 45 302 302 HOH HOH . K 4 HOH A 46 303 303 HOH HOH . K 4 HOH A 47 304 304 HOH HOH . K 4 HOH A 48 305 305 HOH HOH . K 4 HOH A 49 306 306 HOH HOH . K 4 HOH A 50 307 307 HOH HOH . K 4 HOH A 51 308 308 HOH HOH . K 4 HOH A 52 309 309 HOH HOH . K 4 HOH A 53 310 310 HOH HOH . K 4 HOH A 54 311 311 HOH HOH . K 4 HOH A 55 312 312 HOH HOH . K 4 HOH A 56 313 313 HOH HOH . K 4 HOH A 57 314 314 HOH HOH . K 4 HOH A 58 315 315 HOH HOH . K 4 HOH A 59 316 316 HOH HOH . K 4 HOH A 60 317 317 HOH HOH . K 4 HOH A 61 318 318 HOH HOH . K 4 HOH A 62 319 319 HOH HOH . K 4 HOH A 63 320 320 HOH HOH . K 4 HOH A 64 321 321 HOH HOH . K 4 HOH A 65 322 322 HOH HOH . K 4 HOH A 66 323 323 HOH HOH . K 4 HOH A 67 324 324 HOH HOH . K 4 HOH A 68 325 325 HOH HOH . K 4 HOH A 69 326 326 HOH HOH . K 4 HOH A 70 327 327 HOH HOH . K 4 HOH A 71 328 328 HOH HOH . K 4 HOH A 72 329 329 HOH HOH . K 4 HOH A 73 330 330 HOH HOH . K 4 HOH A 74 331 331 HOH HOH . K 4 HOH A 75 332 332 HOH HOH . K 4 HOH A 76 333 333 HOH HOH . K 4 HOH A 77 334 334 HOH HOH . K 4 HOH A 78 335 335 HOH HOH . K 4 HOH A 79 336 336 HOH HOH . K 4 HOH A 80 337 337 HOH HOH . K 4 HOH A 81 338 338 HOH HOH . K 4 HOH A 82 339 339 HOH HOH . K 4 HOH A 83 340 340 HOH HOH . K 4 HOH A 84 341 341 HOH HOH . K 4 HOH A 85 342 342 HOH HOH . K 4 HOH A 86 343 343 HOH HOH . K 4 HOH A 87 344 344 HOH HOH . K 4 HOH A 88 345 345 HOH HOH . K 4 HOH A 89 346 346 HOH HOH . K 4 HOH A 90 347 347 HOH HOH . K 4 HOH A 91 348 348 HOH HOH . K 4 HOH A 92 349 349 HOH HOH . K 4 HOH A 93 350 350 HOH HOH . K 4 HOH A 94 351 351 HOH HOH . K 4 HOH A 95 352 352 HOH HOH . K 4 HOH A 96 353 353 HOH HOH . K 4 HOH A 97 354 354 HOH HOH . K 4 HOH A 98 355 355 HOH HOH . K 4 HOH A 99 356 356 HOH HOH . K 4 HOH A 100 357 357 HOH HOH . K 4 HOH A 101 358 358 HOH HOH . K 4 HOH A 102 359 359 HOH HOH . K 4 HOH A 103 360 360 HOH HOH . K 4 HOH A 104 361 361 HOH HOH . K 4 HOH A 105 362 362 HOH HOH . K 4 HOH A 106 363 363 HOH HOH . K 4 HOH A 107 364 364 HOH HOH . K 4 HOH A 108 365 365 HOH HOH . K 4 HOH A 109 366 366 HOH HOH . K 4 HOH A 110 367 367 HOH HOH . K 4 HOH A 111 368 368 HOH HOH . K 4 HOH A 112 369 369 HOH HOH . K 4 HOH A 113 370 370 HOH HOH . K 4 HOH A 114 371 371 HOH HOH . K 4 HOH A 115 372 372 HOH HOH . K 4 HOH A 116 373 373 HOH HOH . K 4 HOH A 117 374 374 HOH HOH . K 4 HOH A 118 375 375 HOH HOH . K 4 HOH A 119 376 376 HOH HOH . K 4 HOH A 120 377 377 HOH HOH . K 4 HOH A 121 378 378 HOH HOH . K 4 HOH A 122 379 379 HOH HOH . K 4 HOH A 123 380 380 HOH HOH . K 4 HOH A 124 381 381 HOH HOH . K 4 HOH A 125 382 382 HOH HOH . K 4 HOH A 126 383 383 HOH HOH . K 4 HOH A 127 384 384 HOH HOH . K 4 HOH A 128 385 385 HOH HOH . K 4 HOH A 129 386 386 HOH HOH . K 4 HOH A 130 387 338 HOH HOH . L 4 HOH B 1 259 259 HOH HOH . L 4 HOH B 2 260 260 HOH HOH . L 4 HOH B 3 261 261 HOH HOH . L 4 HOH B 4 262 262 HOH HOH . L 4 HOH B 5 263 263 HOH HOH . L 4 HOH B 6 264 264 HOH HOH . L 4 HOH B 7 265 265 HOH HOH . L 4 HOH B 8 266 266 HOH HOH . L 4 HOH B 9 267 267 HOH HOH . L 4 HOH B 10 268 268 HOH HOH . L 4 HOH B 11 269 269 HOH HOH . L 4 HOH B 12 270 270 HOH HOH . L 4 HOH B 13 271 271 HOH HOH . L 4 HOH B 14 272 272 HOH HOH . L 4 HOH B 15 273 273 HOH HOH . L 4 HOH B 16 274 274 HOH HOH . L 4 HOH B 17 275 275 HOH HOH . L 4 HOH B 18 276 276 HOH HOH . L 4 HOH B 19 277 277 HOH HOH . L 4 HOH B 20 278 278 HOH HOH . L 4 HOH B 21 279 279 HOH HOH . L 4 HOH B 22 280 280 HOH HOH . L 4 HOH B 23 281 281 HOH HOH . L 4 HOH B 24 282 282 HOH HOH . L 4 HOH B 25 283 283 HOH HOH . L 4 HOH B 26 284 284 HOH HOH . L 4 HOH B 27 285 285 HOH HOH . L 4 HOH B 28 286 286 HOH HOH . L 4 HOH B 29 287 287 HOH HOH . L 4 HOH B 30 288 288 HOH HOH . L 4 HOH B 31 289 289 HOH HOH . L 4 HOH B 32 290 290 HOH HOH . L 4 HOH B 33 291 291 HOH HOH . L 4 HOH B 34 292 292 HOH HOH . L 4 HOH B 35 293 293 HOH HOH . L 4 HOH B 36 294 294 HOH HOH . L 4 HOH B 37 295 295 HOH HOH . L 4 HOH B 38 296 296 HOH HOH . L 4 HOH B 39 297 297 HOH HOH . L 4 HOH B 40 298 298 HOH HOH . L 4 HOH B 41 299 299 HOH HOH . L 4 HOH B 42 300 300 HOH HOH . L 4 HOH B 43 301 301 HOH HOH . L 4 HOH B 44 302 302 HOH HOH . L 4 HOH B 45 303 303 HOH HOH . L 4 HOH B 46 304 304 HOH HOH . L 4 HOH B 47 305 305 HOH HOH . L 4 HOH B 48 306 306 HOH HOH . L 4 HOH B 49 307 307 HOH HOH . L 4 HOH B 50 308 308 HOH HOH . L 4 HOH B 51 309 309 HOH HOH . L 4 HOH B 52 310 310 HOH HOH . L 4 HOH B 53 311 311 HOH HOH . L 4 HOH B 54 312 312 HOH HOH . L 4 HOH B 55 313 313 HOH HOH . L 4 HOH B 56 314 314 HOH HOH . L 4 HOH B 57 315 315 HOH HOH . L 4 HOH B 58 316 316 HOH HOH . L 4 HOH B 59 317 317 HOH HOH . L 4 HOH B 60 318 318 HOH HOH . L 4 HOH B 61 319 319 HOH HOH . L 4 HOH B 62 320 320 HOH HOH . L 4 HOH B 63 321 321 HOH HOH . L 4 HOH B 64 322 322 HOH HOH . L 4 HOH B 65 323 323 HOH HOH . L 4 HOH B 66 324 324 HOH HOH . L 4 HOH B 67 325 325 HOH HOH . L 4 HOH B 68 326 326 HOH HOH . L 4 HOH B 69 327 327 HOH HOH . L 4 HOH B 70 328 328 HOH HOH . L 4 HOH B 71 329 329 HOH HOH . L 4 HOH B 72 330 330 HOH HOH . L 4 HOH B 73 331 331 HOH HOH . L 4 HOH B 74 332 332 HOH HOH . L 4 HOH B 75 333 333 HOH HOH . L 4 HOH B 76 334 334 HOH HOH . L 4 HOH B 77 335 335 HOH HOH . L 4 HOH B 78 336 336 HOH HOH . L 4 HOH B 79 337 337 HOH HOH . L 4 HOH B 80 339 339 HOH HOH . L 4 HOH B 81 340 340 HOH HOH . L 4 HOH B 82 341 341 HOH HOH . L 4 HOH B 83 342 342 HOH HOH . L 4 HOH B 84 343 343 HOH HOH . L 4 HOH B 85 344 344 HOH HOH . L 4 HOH B 86 345 345 HOH HOH . L 4 HOH B 87 346 346 HOH HOH . L 4 HOH B 88 347 347 HOH HOH . L 4 HOH B 89 348 348 HOH HOH . L 4 HOH B 90 349 349 HOH HOH . L 4 HOH B 91 350 350 HOH HOH . L 4 HOH B 92 351 351 HOH HOH . L 4 HOH B 93 352 352 HOH HOH . L 4 HOH B 94 353 353 HOH HOH . L 4 HOH B 95 354 354 HOH HOH . L 4 HOH B 96 355 355 HOH HOH . L 4 HOH B 97 356 356 HOH HOH . L 4 HOH B 98 357 357 HOH HOH . L 4 HOH B 99 358 358 HOH HOH . L 4 HOH B 100 359 359 HOH HOH . L 4 HOH B 101 360 360 HOH HOH . L 4 HOH B 102 361 361 HOH HOH . L 4 HOH B 103 362 362 HOH HOH . L 4 HOH B 104 363 363 HOH HOH . L 4 HOH B 105 364 364 HOH HOH . L 4 HOH B 106 365 365 HOH HOH . L 4 HOH B 107 366 366 HOH HOH . L 4 HOH B 108 367 367 HOH HOH . L 4 HOH B 109 368 368 HOH HOH . L 4 HOH B 110 369 369 HOH HOH . L 4 HOH B 111 370 370 HOH HOH . L 4 HOH B 112 371 371 HOH HOH . L 4 HOH B 113 372 372 HOH HOH . L 4 HOH B 114 373 373 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 37.713 _atom_site.Cartn_y -12.746 _atom_site.Cartn_z 1.872 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 147 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #