data_3BQ3 # _model_server_result.job_id U7T5DPoeZcbCwgfLfARBFQ _model_server_result.datetime_utc '2025-05-17 11:48:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3BQ3 # _exptl.entry_id 3BQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 129.82 _cell.angle_gamma 90 _cell.entry_id 3BQ3 _cell.length_a 106.863 _cell.length_b 51.453 _cell.length_c 70.852 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 106.863 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 136 A PHE 135 1_555 A N MSE 137 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 137 A MSE 136 1_555 A N GLN 138 A GLN 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 A C ASP 145 A ASP 144 1_555 A N MSE 146 A MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 146 A MSE 145 1_555 A N GLN 147 A GLN 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C ARG 203 A ARG 202 1_555 A N MSE 204 A MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 204 A MSE 203 1_555 A N GLU 205 A GLU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale7 A C ARG 230 A ARG 229 1_555 A N MSE 231 A MSE 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 231 A MSE 230 1_555 A N LEU 232 A LEU 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3BQ3 _atom_sites.fract_transf_matrix[1][1] 0.009358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007802 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1 1 GOL GOL . C 3 HOH A 1 270 270 HOH HOH . C 3 HOH A 2 271 271 HOH HOH . C 3 HOH A 3 272 272 HOH HOH . C 3 HOH A 4 273 273 HOH HOH . C 3 HOH A 5 274 274 HOH HOH . C 3 HOH A 6 275 275 HOH HOH . C 3 HOH A 7 276 276 HOH HOH . C 3 HOH A 8 277 277 HOH HOH . C 3 HOH A 9 278 278 HOH HOH . C 3 HOH A 10 279 279 HOH HOH . C 3 HOH A 11 280 280 HOH HOH . C 3 HOH A 12 281 281 HOH HOH . C 3 HOH A 13 282 282 HOH HOH . C 3 HOH A 14 283 283 HOH HOH . C 3 HOH A 15 284 284 HOH HOH . C 3 HOH A 16 285 285 HOH HOH . C 3 HOH A 17 286 286 HOH HOH . C 3 HOH A 18 287 287 HOH HOH . C 3 HOH A 19 288 288 HOH HOH . C 3 HOH A 20 289 289 HOH HOH . C 3 HOH A 21 290 290 HOH HOH . C 3 HOH A 22 291 291 HOH HOH . C 3 HOH A 23 292 292 HOH HOH . C 3 HOH A 24 293 293 HOH HOH . C 3 HOH A 25 294 294 HOH HOH . C 3 HOH A 26 295 295 HOH HOH . C 3 HOH A 27 296 296 HOH HOH . C 3 HOH A 28 297 297 HOH HOH . C 3 HOH A 29 298 298 HOH HOH . C 3 HOH A 30 299 299 HOH HOH . C 3 HOH A 31 300 300 HOH HOH . C 3 HOH A 32 301 301 HOH HOH . C 3 HOH A 33 302 302 HOH HOH . C 3 HOH A 34 303 303 HOH HOH . C 3 HOH A 35 304 304 HOH HOH . C 3 HOH A 36 305 305 HOH HOH . C 3 HOH A 37 306 306 HOH HOH . C 3 HOH A 38 307 307 HOH HOH . C 3 HOH A 39 308 308 HOH HOH . C 3 HOH A 40 309 309 HOH HOH . C 3 HOH A 41 310 310 HOH HOH . C 3 HOH A 42 311 311 HOH HOH . C 3 HOH A 43 312 312 HOH HOH . C 3 HOH A 44 313 313 HOH HOH . C 3 HOH A 45 314 314 HOH HOH . C 3 HOH A 46 315 315 HOH HOH . C 3 HOH A 47 316 316 HOH HOH . C 3 HOH A 48 317 317 HOH HOH . C 3 HOH A 49 318 318 HOH HOH . C 3 HOH A 50 319 319 HOH HOH . C 3 HOH A 51 320 320 HOH HOH . C 3 HOH A 52 321 321 HOH HOH . C 3 HOH A 53 322 322 HOH HOH . C 3 HOH A 54 323 323 HOH HOH . C 3 HOH A 55 324 324 HOH HOH . C 3 HOH A 56 325 325 HOH HOH . C 3 HOH A 57 326 326 HOH HOH . C 3 HOH A 58 327 327 HOH HOH . C 3 HOH A 59 328 328 HOH HOH . C 3 HOH A 60 329 329 HOH HOH . C 3 HOH A 61 330 330 HOH HOH . C 3 HOH A 62 331 331 HOH HOH . C 3 HOH A 63 332 332 HOH HOH . C 3 HOH A 64 333 333 HOH HOH . C 3 HOH A 65 334 334 HOH HOH . C 3 HOH A 66 335 335 HOH HOH . C 3 HOH A 67 336 336 HOH HOH . C 3 HOH A 68 337 337 HOH HOH . C 3 HOH A 69 338 338 HOH HOH . C 3 HOH A 70 339 339 HOH HOH . C 3 HOH A 71 340 340 HOH HOH . C 3 HOH A 72 341 341 HOH HOH . C 3 HOH A 73 342 342 HOH HOH . C 3 HOH A 74 343 343 HOH HOH . C 3 HOH A 75 344 344 HOH HOH . C 3 HOH A 76 345 345 HOH HOH . C 3 HOH A 77 346 346 HOH HOH . C 3 HOH A 78 347 347 HOH HOH . C 3 HOH A 79 348 348 HOH HOH . C 3 HOH A 80 349 349 HOH HOH . C 3 HOH A 81 350 350 HOH HOH . C 3 HOH A 82 351 351 HOH HOH . C 3 HOH A 83 352 352 HOH HOH . C 3 HOH A 84 353 353 HOH HOH . C 3 HOH A 85 355 355 HOH HOH . C 3 HOH A 86 356 356 HOH HOH . C 3 HOH A 87 357 357 HOH HOH . C 3 HOH A 88 358 358 HOH HOH . C 3 HOH A 89 359 359 HOH HOH . C 3 HOH A 90 360 360 HOH HOH . C 3 HOH A 91 361 361 HOH HOH . C 3 HOH A 92 362 362 HOH HOH . C 3 HOH A 93 363 363 HOH HOH . C 3 HOH A 94 364 364 HOH HOH . C 3 HOH A 95 366 366 HOH HOH . C 3 HOH A 96 367 367 HOH HOH . C 3 HOH A 97 368 368 HOH HOH . C 3 HOH A 98 370 370 HOH HOH . C 3 HOH A 99 371 371 HOH HOH . C 3 HOH A 100 372 372 HOH HOH . C 3 HOH A 101 373 373 HOH HOH . C 3 HOH A 102 374 374 HOH HOH . C 3 HOH A 103 375 375 HOH HOH . C 3 HOH A 104 376 376 HOH HOH . C 3 HOH A 105 377 377 HOH HOH . C 3 HOH A 106 378 378 HOH HOH . C 3 HOH A 107 379 379 HOH HOH . C 3 HOH A 108 380 380 HOH HOH . C 3 HOH A 109 381 381 HOH HOH . C 3 HOH A 110 382 382 HOH HOH . C 3 HOH A 111 383 383 HOH HOH . C 3 HOH A 112 384 384 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 38.512 -7.191 19.026 1 59.11 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . B 2 37.93 -6.797 20.247 1 58.45 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . B 2 40.006 -7.466 19.266 1 58.19 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . B 2 40.167 -8.85 19.454 1 55.73 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . B 2 40.887 -6.987 18.103 1 58.37 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . . . B 2 42.236 -7.357 18.313 1 60.74 ? O3 GOL 1 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #