data_3BQZ # _model_server_result.job_id dHmnsEibeRon4bLer8pZgA _model_server_result.datetime_utc '2024-11-25 14:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":200}' # _entry.id 3BQZ # _exptl.entry_id 3BQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.458 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALACHITE GREEN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BQZ _cell.length_a 104.387 _cell.length_b 104.387 _cell.length_c 97.184 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 0 180.803588 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H25 N2 1' _chem_comp.formula_weight 329.458 _chem_comp.id MGR _chem_comp.mon_nstd_flag . _chem_comp.name 'MALACHITE GREEN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MGR sing 247 n n C1 C8 MGR sing 248 n n C1 C14 MGR doub 249 n n C2 C3 MGR doub 250 n y C2 C7 MGR sing 251 n y C3 C4 MGR sing 252 n y C3 H31 MGR sing 253 n n C4 C5 MGR doub 254 n y C4 H41 MGR sing 255 n n C5 C6 MGR sing 256 n y C5 H51 MGR sing 257 n n C6 C7 MGR doub 258 n y C6 H61 MGR sing 259 n n C7 H71 MGR sing 260 n n C8 C9 MGR doub 261 n y C8 C13 MGR sing 262 n y C9 C10 MGR sing 263 n y C9 H91 MGR sing 264 n n C10 C11 MGR doub 265 n y C10 H101 MGR sing 266 n n C11 C12 MGR sing 267 n y C11 N2 MGR sing 268 n n C12 C13 MGR doub 269 n y C12 H121 MGR sing 270 n n C13 H131 MGR sing 271 n n C14 C15 MGR sing 272 n n C14 C19 MGR sing 273 n n C15 C16 MGR doub 274 n n C15 H151 MGR sing 275 n n C16 C17 MGR sing 276 n n C16 H161 MGR sing 277 n n C17 C18 MGR sing 278 n n C17 N3 MGR doub 279 n n C18 C19 MGR doub 280 n n C18 H181 MGR sing 281 n n C19 H191 MGR sing 282 n n C22 N2 MGR sing 283 n n C22 H221 MGR sing 284 n n C22 H222 MGR sing 285 n n C22 H223 MGR sing 286 n n C23 N2 MGR sing 287 n n C23 H231 MGR sing 288 n n C23 H232 MGR sing 289 n n C23 H233 MGR sing 290 n n C24 N3 MGR sing 291 n n C24 H241 MGR sing 292 n n C24 H242 MGR sing 293 n n C24 H243 MGR sing 294 n n C25 N3 MGR sing 295 n n C25 H251 MGR sing 296 n n C25 H252 MGR sing 297 n n C25 H253 MGR sing 298 n n # _atom_sites.entry_id 3BQZ _atom_sites.fract_transf_matrix[1][1] 0.00958 _atom_sites.fract_transf_matrix[1][2] 0.005531 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 B 1 502 502 SO4 SO4 . D 2 SO4 B 1 503 503 SO4 SO4 . E 2 SO4 B 1 506 506 SO4 SO4 . F 2 SO4 A 1 501 501 SO4 SO4 . G 2 SO4 A 1 504 504 SO4 SO4 . H 2 SO4 A 1 505 505 SO4 SO4 . I 3 IMD A 1 401 401 IMD IMD . J 3 IMD A 1 402 402 IMD IMD . K 4 MGR A 1 200 200 MGR MGR . L 5 HOH B 1 507 1 HOH HOH . L 5 HOH B 2 508 2 HOH HOH . L 5 HOH B 3 509 6 HOH HOH . L 5 HOH B 4 510 8 HOH HOH . L 5 HOH B 5 511 9 HOH HOH . L 5 HOH B 6 512 11 HOH HOH . L 5 HOH B 7 513 12 HOH HOH . L 5 HOH B 8 514 14 HOH HOH . L 5 HOH B 9 515 16 HOH HOH . L 5 HOH B 10 516 53 HOH HOH . L 5 HOH B 11 517 61 HOH HOH . L 5 HOH B 12 518 79 HOH HOH . L 5 HOH B 13 519 91 HOH HOH . L 5 HOH B 14 520 105 HOH HOH . L 5 HOH B 15 521 108 HOH HOH . L 5 HOH B 16 522 109 HOH HOH . L 5 HOH B 17 523 113 HOH HOH . L 5 HOH B 18 524 116 HOH HOH . L 5 HOH B 19 525 118 HOH HOH . L 5 HOH B 20 526 119 HOH HOH . L 5 HOH B 21 527 123 HOH HOH . L 5 HOH B 22 528 127 HOH HOH . L 5 HOH B 23 529 128 HOH HOH . L 5 HOH B 24 530 130 HOH HOH . L 5 HOH B 25 531 133 HOH HOH . L 5 HOH B 26 532 142 HOH HOH . M 5 HOH A 1 506 5 HOH HOH . M 5 HOH A 2 507 7 HOH HOH . M 5 HOH A 3 508 18 HOH HOH . M 5 HOH A 4 509 20 HOH HOH . M 5 HOH A 5 510 22 HOH HOH . M 5 HOH A 6 511 24 HOH HOH . M 5 HOH A 7 512 25 HOH HOH . M 5 HOH A 8 513 27 HOH HOH . M 5 HOH A 9 514 28 HOH HOH . M 5 HOH A 10 515 29 HOH HOH . M 5 HOH A 11 516 33 HOH HOH . M 5 HOH A 12 517 34 HOH HOH . M 5 HOH A 13 518 35 HOH HOH . M 5 HOH A 14 519 39 HOH HOH . M 5 HOH A 15 520 50 HOH HOH . M 5 HOH A 16 521 52 HOH HOH . M 5 HOH A 17 522 62 HOH HOH . M 5 HOH A 18 523 63 HOH HOH . M 5 HOH A 19 524 64 HOH HOH . M 5 HOH A 20 525 65 HOH HOH . M 5 HOH A 21 526 66 HOH HOH . M 5 HOH A 22 527 67 HOH HOH . M 5 HOH A 23 528 68 HOH HOH . M 5 HOH A 24 529 69 HOH HOH . M 5 HOH A 25 530 51 HOH HOH . M 5 HOH A 26 531 72 HOH HOH . M 5 HOH A 27 532 73 HOH HOH . M 5 HOH A 28 533 74 HOH HOH . M 5 HOH A 29 534 80 HOH HOH . M 5 HOH A 30 535 81 HOH HOH . M 5 HOH A 31 536 82 HOH HOH . M 5 HOH A 32 537 83 HOH HOH . M 5 HOH A 33 538 84 HOH HOH . M 5 HOH A 34 539 85 HOH HOH . M 5 HOH A 35 540 92 HOH HOH . M 5 HOH A 36 541 93 HOH HOH . M 5 HOH A 37 542 103 HOH HOH . M 5 HOH A 38 543 104 HOH HOH . M 5 HOH A 39 544 106 HOH HOH . M 5 HOH A 40 545 107 HOH HOH . M 5 HOH A 41 546 110 HOH HOH . M 5 HOH A 42 547 111 HOH HOH . M 5 HOH A 43 548 112 HOH HOH . M 5 HOH A 44 549 114 HOH HOH . M 5 HOH A 45 550 115 HOH HOH . M 5 HOH A 46 551 117 HOH HOH . M 5 HOH A 47 552 120 HOH HOH . M 5 HOH A 48 553 121 HOH HOH . M 5 HOH A 49 554 122 HOH HOH . M 5 HOH A 50 555 124 HOH HOH . M 5 HOH A 51 556 125 HOH HOH . M 5 HOH A 52 557 126 HOH HOH . M 5 HOH A 53 558 129 HOH HOH . M 5 HOH A 54 559 131 HOH HOH . M 5 HOH A 55 560 132 HOH HOH . M 5 HOH A 56 561 137 HOH HOH . M 5 HOH A 57 562 138 HOH HOH . M 5 HOH A 58 563 140 HOH HOH . M 5 HOH A 59 564 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MGR . . . K 4 14.514 80.777 -7.237 1 43.83 ? C1 MGR 200 A 1 HETATM 2 C C2 MGR . . . K 4 13.767 80.761 -5.916 1 43.55 ? C2 MGR 200 A 1 HETATM 3 C C3 MGR . . . K 4 13.089 79.556 -5.665 1 44.42 ? C3 MGR 200 A 1 HETATM 4 C C4 MGR . . . K 4 12.324 79.372 -4.508 1 43.82 ? C4 MGR 200 A 1 HETATM 5 C C5 MGR . . . K 4 12.214 80.411 -3.592 1 42 ? C5 MGR 200 A 1 HETATM 6 C C6 MGR . . . K 4 12.869 81.617 -3.839 1 42.45 ? C6 MGR 200 A 1 HETATM 7 C C7 MGR . . . K 4 13.628 81.8 -5.001 1 43.12 ? C7 MGR 200 A 1 HETATM 8 C C8 MGR . . . K 4 13.968 81.674 -8.341 1 43.78 ? C8 MGR 200 A 1 HETATM 9 C C9 MGR . . . K 4 12.621 82.03 -8.389 1 42.19 ? C9 MGR 200 A 1 HETATM 10 C C10 MGR . . . K 4 12.137 82.884 -9.383 1 43.32 ? C10 MGR 200 A 1 HETATM 11 C C11 MGR . . . K 4 12.99 83.437 -10.349 1 43.34 ? C11 MGR 200 A 1 HETATM 12 C C12 MGR . . . K 4 14.347 83.105 -10.287 1 43.06 ? C12 MGR 200 A 1 HETATM 13 C C13 MGR . . . K 4 14.821 82.253 -9.296 1 43.74 ? C13 MGR 200 A 1 HETATM 14 C C14 MGR . . . K 4 15.718 79.903 -7.354 1 42.23 ? C14 MGR 200 A 1 HETATM 15 C C15 MGR . . . K 4 16.049 79.37 -8.605 1 42.8 ? C15 MGR 200 A 1 HETATM 16 C C16 MGR . . . K 4 17.153 78.56 -8.784 1 43.15 ? C16 MGR 200 A 1 HETATM 17 C C17 MGR . . . K 4 17.927 78.212 -7.685 1 42.15 ? C17 MGR 200 A 1 HETATM 18 C C18 MGR . . . K 4 17.576 78.694 -6.423 1 40.8 ? C18 MGR 200 A 1 HETATM 19 C C19 MGR . . . K 4 16.467 79.513 -6.248 1 42.36 ? C19 MGR 200 A 1 HETATM 20 C C22 MGR . . . K 4 13.445 84.845 -12.326 1 43.18 ? C22 MGR 200 A 1 HETATM 21 C C23 MGR . . . K 4 11.124 84.667 -11.409 1 43.21 ? C23 MGR 200 A 1 HETATM 22 C C24 MGR . . . K 4 19.837 77.04 -6.721 1 43.32 ? C24 MGR 200 A 1 HETATM 23 C C25 MGR . . . K 4 19.392 76.905 -9.169 1 43.29 ? C25 MGR 200 A 1 HETATM 24 N N2 MGR . . . K 4 12.531 84.288 -11.324 1 43.85 ? N2 MGR 200 A 1 HETATM 25 N N3 MGR . . . K 4 19.013 77.417 -7.859 1 43.68 ? N3 MGR 200 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #