data_3BR2 # _model_server_result.job_id CvipqGdSjuHKG-xfPBtzJg _model_server_result.datetime_utc '2024-10-15 00:21:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3br2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":201}' # _entry.id 3BR2 # _exptl.entry_id 3BR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.665 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEQUALINIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BR2 _cell.length_a 171.601 _cell.length_b 171.601 _cell.length_c 94.329 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA hexadecameric 16 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,P,Q,R,S,T,U,V,W,X,Y,EA,GA 1 1 B,D,H,I,J,K,L,M,N,O,Z,AA,BA,CA,DA,FA,HA 2 1 A,C,E,F,G,P,Q,R,S,T,U,V,W,X,Y,EA,GA 3 2,3,4,5 B,D,H,I,J,K,L,M,N,O,Z,AA,BA,CA,DA,FA,HA 3 1,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x+1/2,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 85.8005 85.8005 47.1645 3 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z+1/2 0 1 0 -1 0 0 0 0 1 85.8005 85.8005 47.1645 4 'crystal symmetry operation' 5_555 -x+1/2,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 85.8005 85.8005 47.1645 5 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z+1/2 0 -1 0 1 0 0 0 0 1 85.8005 85.8005 47.1645 6 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 171.601 171.601 94.329 7 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 171.601 171.601 0 8 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 94.329 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id Y _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H40 N4 2' _chem_comp.formula_weight 456.665 _chem_comp.id DEQ _chem_comp.mon_nstd_flag . _chem_comp.name DEQUALINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DEQUADIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEQ doub 83 n y C1 C5 DEQ sing 84 n y C1 H11 DEQ sing 85 n n C2 C3 DEQ sing 86 n y C2 H21 DEQ sing 87 n n C3 C4 DEQ doub 88 n y C3 H31 DEQ sing 89 n n C4 C6 DEQ sing 90 n y C4 H41 DEQ sing 91 n n C5 C6 DEQ doub 92 n y C5 N1 DEQ sing 93 n y C6 C7 DEQ sing 94 n y C7 C8 DEQ doub 95 n y C7 N4 DEQ sing 96 n n C8 C9 DEQ sing 97 n y C8 H81 DEQ sing 98 n n C9 N1 DEQ doub 99 n y C9 C30 DEQ sing 100 n n N1 C28 DEQ sing 101 n n C10 C11 DEQ doub 102 n y C10 C14 DEQ sing 103 n y C10 C15 DEQ sing 104 n y C11 N2 DEQ sing 105 n y C11 C18 DEQ sing 106 n y N2 C12 DEQ doub 107 n y N2 C19 DEQ sing 108 n n C12 C13 DEQ sing 109 n y C12 C29 DEQ sing 110 n n C13 C14 DEQ doub 111 n y C13 H131 DEQ sing 112 n n C14 N3 DEQ sing 113 n n C15 C16 DEQ doub 114 n y C15 H151 DEQ sing 115 n n C16 C17 DEQ sing 116 n y C16 H161 DEQ sing 117 n n C17 C18 DEQ doub 118 n y C17 H171 DEQ sing 119 n n C18 H181 DEQ sing 120 n n C19 C20 DEQ sing 121 n n C19 H191 DEQ sing 122 n n C19 H192 DEQ sing 123 n n C20 C21 DEQ sing 124 n n C20 H201 DEQ sing 125 n n C20 H202 DEQ sing 126 n n C21 C22 DEQ sing 127 n n C21 H211 DEQ sing 128 n n C21 H212 DEQ sing 129 n n C22 C23 DEQ sing 130 n n C22 H221 DEQ sing 131 n n C22 H222 DEQ sing 132 n n C23 C24 DEQ sing 133 n n C23 H231 DEQ sing 134 n n C23 H232 DEQ sing 135 n n C24 C25 DEQ sing 136 n n C24 H241 DEQ sing 137 n n C24 H242 DEQ sing 138 n n C25 C26 DEQ sing 139 n n C25 H251 DEQ sing 140 n n C25 H252 DEQ sing 141 n n C26 C27 DEQ sing 142 n n C26 H261 DEQ sing 143 n n C26 H262 DEQ sing 144 n n C27 C28 DEQ sing 145 n n C27 H271 DEQ sing 146 n n C27 H272 DEQ sing 147 n n C28 H281 DEQ sing 148 n n C28 H282 DEQ sing 149 n n C30 H301 DEQ sing 150 n n C30 H302 DEQ sing 151 n n C30 H303 DEQ sing 152 n n C29 H291 DEQ sing 153 n n C29 H292 DEQ sing 154 n n C29 H293 DEQ sing 155 n n N4 HN41 DEQ sing 156 n n N4 HN42 DEQ sing 157 n n N3 HN31 DEQ sing 158 n n N3 HN32 DEQ sing 159 n n # _atom_sites.entry_id 3BR2 _atom_sites.fract_transf_matrix[1][1] 0.005827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 B 1 511 511 SO4 SO4 . F 2 SO4 B 1 521 521 SO4 SO4 . G 2 SO4 B 1 531 531 SO4 SO4 . H 2 SO4 D 1 512 512 SO4 SO4 . I 2 SO4 D 1 513 513 SO4 SO4 . J 2 SO4 D 1 514 514 SO4 SO4 . K 2 SO4 D 1 515 515 SO4 SO4 . L 2 SO4 D 1 516 516 SO4 SO4 . M 2 SO4 D 1 533 533 SO4 SO4 . N 2 SO4 D 1 535 535 SO4 SO4 . O 2 SO4 D 1 537 537 SO4 SO4 . P 2 SO4 A 1 500 500 SO4 SO4 . Q 2 SO4 A 1 501 501 SO4 SO4 . R 2 SO4 A 1 504 504 SO4 SO4 . S 2 SO4 A 1 505 505 SO4 SO4 . T 2 SO4 A 1 506 506 SO4 SO4 . U 2 SO4 A 1 508 508 SO4 SO4 . V 2 SO4 A 1 518 518 SO4 SO4 . W 2 SO4 A 1 520 520 SO4 SO4 . X 2 SO4 A 1 536 536 SO4 SO4 . Y 3 DEQ A 1 201 201 DEQ DEQ . Z 2 SO4 E 1 503 503 SO4 SO4 . AA 2 SO4 E 1 509 509 SO4 SO4 . BA 2 SO4 E 1 519 519 SO4 SO4 . CA 2 SO4 E 1 532 532 SO4 SO4 . DA 2 SO4 E 1 534 534 SO4 SO4 . EA 4 HOH B 1 532 10 HOH HOH . EA 4 HOH B 2 533 16 HOH HOH . EA 4 HOH B 3 534 17 HOH HOH . EA 4 HOH B 4 535 24 HOH HOH . EA 4 HOH B 5 536 25 HOH HOH . EA 4 HOH B 6 537 26 HOH HOH . EA 4 HOH B 7 538 27 HOH HOH . EA 4 HOH B 8 539 28 HOH HOH . EA 4 HOH B 9 540 29 HOH HOH . FA 4 HOH D 1 538 3 HOH HOH . FA 4 HOH D 2 539 4 HOH HOH . FA 4 HOH D 3 540 9 HOH HOH . FA 4 HOH D 4 541 12 HOH HOH . FA 4 HOH D 5 542 14 HOH HOH . FA 4 HOH D 6 543 15 HOH HOH . FA 4 HOH D 7 544 30 HOH HOH . GA 4 HOH A 1 537 1 HOH HOH . GA 4 HOH A 2 538 2 HOH HOH . GA 4 HOH A 3 539 6 HOH HOH . GA 4 HOH A 4 540 8 HOH HOH . GA 4 HOH A 5 541 18 HOH HOH . GA 4 HOH A 6 542 19 HOH HOH . GA 4 HOH A 7 543 20 HOH HOH . GA 4 HOH A 8 544 21 HOH HOH . GA 4 HOH A 9 545 22 HOH HOH . GA 4 HOH A 10 546 23 HOH HOH . HA 4 HOH E 1 535 5 HOH HOH . HA 4 HOH E 2 536 7 HOH HOH . HA 4 HOH E 3 537 11 HOH HOH . HA 4 HOH E 4 538 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEQ . . . Y 3 14.184 35.248 7.615 1 111.6 ? C1 DEQ 201 A 1 HETATM 2 C C2 DEQ . . . Y 3 13.809 33.993 7.155 1 111.5 ? C2 DEQ 201 A 1 HETATM 3 C C3 DEQ . . . Y 3 12.56 33.485 7.465 1 111.56 ? C3 DEQ 201 A 1 HETATM 4 C C4 DEQ . . . Y 3 11.687 34.236 8.239 1 111.4 ? C4 DEQ 201 A 1 HETATM 5 C C5 DEQ . . . Y 3 13.317 36.025 8.398 1 111.62 ? C5 DEQ 201 A 1 HETATM 6 C C6 DEQ . . . Y 3 12.052 35.501 8.709 1 111.33 ? C6 DEQ 201 A 1 HETATM 7 C C7 DEQ . . . Y 3 11.173 36.255 9.487 1 111.38 ? C7 DEQ 201 A 1 HETATM 8 C C8 DEQ . . . Y 3 11.574 37.504 9.932 1 111.38 ? C8 DEQ 201 A 1 HETATM 9 C C9 DEQ . . . Y 3 12.832 37.985 9.604 1 111.63 ? C9 DEQ 201 A 1 HETATM 10 N N1 DEQ . . . Y 3 13.684 37.254 8.848 1 111.84 ? N1 DEQ 201 A 1 HETATM 11 C C10 DEQ . . . Y 3 21.891 40.466 1.746 1 123.98 ? C10 DEQ 201 A 1 HETATM 12 C C11 DEQ . . . Y 3 21.957 40.717 3.13 1 123.97 ? C11 DEQ 201 A 1 HETATM 13 N N2 DEQ . . . Y 3 23.129 40.536 3.81 1 123.76 ? N2 DEQ 201 A 1 HETATM 14 C C12 DEQ . . . Y 3 24.238 40.11 3.162 1 123.83 ? C12 DEQ 201 A 1 HETATM 15 C C13 DEQ . . . Y 3 24.214 39.854 1.801 1 123.85 ? C13 DEQ 201 A 1 HETATM 16 C C14 DEQ . . . Y 3 23.042 40.028 1.08 1 123.9 ? C14 DEQ 201 A 1 HETATM 17 C C15 DEQ . . . Y 3 20.684 40.655 1.055 1 124.01 ? C15 DEQ 201 A 1 HETATM 18 C C16 DEQ . . . Y 3 19.542 41.092 1.719 1 124.01 ? C16 DEQ 201 A 1 HETATM 19 C C17 DEQ . . . Y 3 19.594 41.346 3.084 1 123.95 ? C17 DEQ 201 A 1 HETATM 20 C C18 DEQ . . . Y 3 20.787 41.158 3.78 1 124.01 ? C18 DEQ 201 A 1 HETATM 21 C C19 DEQ . . . Y 3 23.225 40.782 5.267 1 123.46 ? C19 DEQ 201 A 1 HETATM 22 C C20 DEQ . . . Y 3 22.823 39.509 6.019 1 121.37 ? C20 DEQ 201 A 1 HETATM 23 C C21 DEQ . . . Y 3 22.203 39.773 7.392 1 120.11 ? C21 DEQ 201 A 1 HETATM 24 C C22 DEQ . . . Y 3 20.958 38.914 7.605 1 119.27 ? C22 DEQ 201 A 1 HETATM 25 C C23 DEQ . . . Y 3 20.246 39.229 8.923 1 118.42 ? C23 DEQ 201 A 1 HETATM 26 C C24 DEQ . . . Y 3 18.769 38.812 8.89 1 117.49 ? C24 DEQ 201 A 1 HETATM 27 C C25 DEQ . . . Y 3 18.332 38.084 10.164 1 116.26 ? C25 DEQ 201 A 1 HETATM 28 C C26 DEQ . . . Y 3 16.815 38.091 10.354 1 114.84 ? C26 DEQ 201 A 1 HETATM 29 C C27 DEQ . . . Y 3 16.099 37.139 9.393 1 113.73 ? C27 DEQ 201 A 1 HETATM 30 C C28 DEQ . . . Y 3 15.018 37.815 8.533 1 112.1 ? C28 DEQ 201 A 1 HETATM 31 C C30 DEQ . . . Y 3 13.199 39.353 10.126 1 111.62 ? C30 DEQ 201 A 1 HETATM 32 C C29 DEQ . . . Y 3 25.551 39.895 3.871 1 123.91 ? C29 DEQ 201 A 1 HETATM 33 N N4 DEQ . . . Y 3 9.933 35.831 9.832 1 111.65 ? N4 DEQ 201 A 1 HETATM 34 N N3 DEQ . . . Y 3 23.077 39.76 -0.25 1 123.94 ? N3 DEQ 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #