data_3BR5 # _model_server_result.job_id -IHnS43HGxN8tGJovW7enQ _model_server_result.datetime_utc '2024-11-29 04:48:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3br5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":201}' # _entry.id 3BR5 # _exptl.entry_id 3BR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.557 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RHODAMINE 6G' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BR5 _cell.length_a 171.726 _cell.length_b 171.746 _cell.length_c 94.785 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA hexadecameric 16 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,M,N,O,P,Q,R,S,T,U,V,W,X,Y,GA 1 1 B,D,I,J,K,L,Z,AA,BA,CA,DA,EA,FA,HA 2 1 A,C,E,F,G,H,M,N,O,P,Q,R,S,T,U,V,W,X,Y,GA 3 1,2,3,4 B,D,I,J,K,L,Z,AA,BA,CA,DA,EA,FA,HA 3 5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 0.999884 0 1.000116 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -171.726 -171.746 0 4 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -0.999884 0 -1.000116 0 0 0 0 -1 -171.726 -171.746 0 5 'crystal symmetry operation' 6_445 x-1/2,-y-1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 -85.863 -85.873 47.3925 6 'crystal symmetry operation' 3_444 -y-1/2,x-1/2,z-1/2 0 -0.999884 0 1.000116 0 0 0 0 1 -85.863 -85.873 -47.3925 7 'crystal symmetry operation' 5_445 -x-1/2,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 -85.863 -85.873 47.3925 8 'crystal symmetry operation' 4_444 y-1/2,-x-1/2,z-1/2 0 0.999884 0 -1.000116 0 0 0 0 1 -85.863 -85.873 -47.3925 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H31 N2 O3 1' _chem_comp.formula_weight 443.557 _chem_comp.id RHQ _chem_comp.mon_nstd_flag . _chem_comp.name 'RHODAMINE 6G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RHQ sing 277 n y C1 C6 RHQ doub 278 n y C1 O1 RHQ sing 279 n y C2 C3 RHQ sing 280 n y C2 C9 RHQ doub 281 n y C3 C4 RHQ doub 282 n y C3 H31 RHQ sing 283 n n C4 C5 RHQ sing 284 n y C4 C21 RHQ sing 285 n n C5 C6 RHQ sing 286 n y C5 N2 RHQ doub 287 z n C6 H61 RHQ sing 288 n n O1 C7 RHQ sing 289 n y C7 C8 RHQ doub 290 n y C7 C10 RHQ sing 291 n y C8 C9 RHQ sing 292 n y C8 C13 RHQ sing 293 n y C9 C14 RHQ sing 294 n y C10 C11 RHQ doub 295 n y C10 H101 RHQ sing 296 n n C11 C12 RHQ sing 297 n y C11 N1 RHQ sing 298 n n C12 C13 RHQ doub 299 n y C12 C20 RHQ sing 300 n n C13 H131 RHQ sing 301 n n N1 C22 RHQ sing 302 n n N1 HN11 RHQ sing 303 n n C14 C15 RHQ doub 304 n y C14 C19 RHQ sing 305 n y C15 C16 RHQ sing 306 n y C15 H151 RHQ sing 307 n n C16 C17 RHQ doub 308 n y C16 H161 RHQ sing 309 n n C17 C18 RHQ sing 310 n y C17 H171 RHQ sing 311 n n C18 C19 RHQ doub 312 n y C18 H181 RHQ sing 313 n n C19 C26 RHQ sing 314 n n C20 H201 RHQ sing 315 n n C20 H202 RHQ sing 316 n n C20 H203 RHQ sing 317 n n C21 H211 RHQ sing 318 n n C21 H212 RHQ sing 319 n n C21 H213 RHQ sing 320 n n C22 C23 RHQ sing 321 n n C22 H221 RHQ sing 322 n n C22 H222 RHQ sing 323 n n C23 H231 RHQ sing 324 n n C23 H232 RHQ sing 325 n n C23 H233 RHQ sing 326 n n N2 C24 RHQ sing 327 n n N2 HN21 RHQ sing 328 n n C24 C25 RHQ sing 329 n n C24 H241 RHQ sing 330 n n C24 H242 RHQ sing 331 n n C25 H251 RHQ sing 332 n n C25 H252 RHQ sing 333 n n C25 H253 RHQ sing 334 n n C26 O27 RHQ doub 335 n n C26 O2 RHQ sing 336 n n O2 C28 RHQ sing 337 n n C28 C29 RHQ sing 338 n n C28 H281 RHQ sing 339 n n C28 H282 RHQ sing 340 n n C29 H291 RHQ sing 341 n n C29 H292 RHQ sing 342 n n C29 H293 RHQ sing 343 n n # _atom_sites.entry_id 3BR5 _atom_sites.fract_transf_matrix[1][1] 0.005823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 B 1 505 505 SO4 SO4 . F 2 SO4 B 1 506 1 SO4 SO4 . G 2 SO4 B 1 507 7 SO4 SO4 . H 2 SO4 B 1 508 9 SO4 SO4 . I 2 SO4 D 1 502 502 SO4 SO4 . J 2 SO4 D 1 508 508 SO4 SO4 . K 2 SO4 D 1 509 509 SO4 SO4 . L 2 SO4 D 1 516 516 SO4 SO4 . M 3 RHQ A 1 201 201 RHQ RHQ . N 2 SO4 A 1 501 501 SO4 SO4 . O 2 SO4 A 1 503 503 SO4 SO4 . P 2 SO4 A 1 504 504 SO4 SO4 . Q 2 SO4 A 1 506 506 SO4 SO4 . R 2 SO4 A 1 507 507 SO4 SO4 . S 2 SO4 A 1 511 511 SO4 SO4 . T 2 SO4 A 1 512 2 SO4 SO4 . U 2 SO4 A 1 513 3 SO4 SO4 . V 2 SO4 A 1 514 4 SO4 SO4 . W 2 SO4 A 1 515 5 SO4 SO4 . X 2 SO4 A 1 516 6 SO4 SO4 . Y 2 SO4 A 1 517 10 SO4 SO4 . Z 2 SO4 E 1 512 512 SO4 SO4 . AA 2 SO4 E 1 513 513 SO4 SO4 . BA 2 SO4 E 1 514 514 SO4 SO4 . CA 2 SO4 E 1 515 515 SO4 SO4 . DA 2 SO4 E 1 516 8 SO4 SO4 . EA 2 SO4 E 1 517 11 SO4 SO4 . FA 4 HOH D 1 517 6 HOH HOH . FA 4 HOH D 2 518 14 HOH HOH . GA 4 HOH A 1 518 1 HOH HOH . GA 4 HOH A 2 519 1 HOH HOH . HA 4 HOH E 1 518 4 HOH HOH . HA 4 HOH E 2 519 8 HOH HOH . HA 4 HOH E 3 520 10 HOH HOH . HA 4 HOH E 4 521 13 HOH HOH . HA 4 HOH E 5 522 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RHQ . A . M 3 -62.756 -46.003 1.687 0.5 82.47 ? C1 RHQ 201 A 1 HETATM 2 C C1 RHQ . B . M 3 -69.675 -44.641 5.864 0.5 60.92 ? C1 RHQ 201 A 1 HETATM 3 C C2 RHQ . A . M 3 -62.488 -45.895 3.059 0.5 82.33 ? C2 RHQ 201 A 1 HETATM 4 C C2 RHQ . B . M 3 -69.692 -46.03 5.862 0.5 61.05 ? C2 RHQ 201 A 1 HETATM 5 C C3 RHQ . A . M 3 -61.208 -45.522 3.473 0.5 82.37 ? C3 RHQ 201 A 1 HETATM 6 C C3 RHQ . B . M 3 -68.801 -46.734 5.056 0.5 61.15 ? C3 RHQ 201 A 1 HETATM 7 C C4 RHQ . A . M 3 -60.211 -45.264 2.527 0.5 82.43 ? C4 RHQ 201 A 1 HETATM 8 C C4 RHQ . B . M 3 -67.888 -46.061 4.248 0.5 61.28 ? C4 RHQ 201 A 1 HETATM 9 C C5 RHQ . A . M 3 -60.48 -45.372 1.165 0.5 82.48 ? C5 RHQ 201 A 1 HETATM 10 C C5 RHQ . B . M 3 -67.867 -44.661 4.241 0.5 61.16 ? C5 RHQ 201 A 1 HETATM 11 C C6 RHQ . A . M 3 -61.759 -45.744 0.753 0.5 82.41 ? C6 RHQ 201 A 1 HETATM 12 C C6 RHQ . B . M 3 -68.767 -43.978 5.053 0.5 60.87 ? C6 RHQ 201 A 1 HETATM 13 O O1 RHQ . A . M 3 -63.891 -46.334 1.253 0.5 82.44 ? O1 RHQ 201 A 1 HETATM 14 O O1 RHQ . B . M 3 -70.473 -43.973 6.579 0.5 61.36 ? O1 RHQ 201 A 1 HETATM 15 C C7 RHQ . A . M 3 -64.871 -46.595 1.996 0.5 82.46 ? C7 RHQ 201 A 1 HETATM 16 C C7 RHQ . B . M 3 -71.334 -44.487 7.351 0.5 61.25 ? C7 RHQ 201 A 1 HETATM 17 C C8 RHQ . A . M 3 -64.758 -46.53 3.386 0.5 82.47 ? C8 RHQ 201 A 1 HETATM 18 C C8 RHQ . B . M 3 -71.455 -45.876 7.448 0.5 61.13 ? C8 RHQ 201 A 1 HETATM 19 C C9 RHQ . A . M 3 -63.537 -46.159 3.944 0.5 82.54 ? C9 RHQ 201 A 1 HETATM 20 C C9 RHQ . B . M 3 -70.61 -46.675 6.684 0.5 61.14 ? C9 RHQ 201 A 1 HETATM 21 C C10 RHQ . A . M 3 -66.086 -46.952 1.417 0.5 82.48 ? C10 RHQ 201 A 1 HETATM 22 C C10 RHQ . B . M 3 -72.172 -43.667 8.114 0.5 60.96 ? C10 RHQ 201 A 1 HETATM 23 C C11 RHQ . A . M 3 -67.193 -47.248 2.221 0.5 82.53 ? C11 RHQ 201 A 1 HETATM 24 C C11 RHQ . B . M 3 -73.123 -44.24 8.967 0.5 61.04 ? C11 RHQ 201 A 1 HETATM 25 C C12 RHQ . A . M 3 -67.075 -47.183 3.603 0.5 82.49 ? C12 RHQ 201 A 1 HETATM 26 C C12 RHQ . B . M 3 -73.225 -45.619 9.051 0.5 60.99 ? C12 RHQ 201 A 1 HETATM 27 C C13 RHQ . A . M 3 -65.867 -46.825 4.186 0.5 82.41 ? C13 RHQ 201 A 1 HETATM 28 C C13 RHQ . B . M 3 -72.4 -46.436 8.3 0.5 60.99 ? C13 RHQ 201 A 1 HETATM 29 N N1 RHQ . A . M 3 -68.408 -47.6 1.722 0.5 82.58 ? N1 RHQ 201 A 1 HETATM 30 N N1 RHQ . B . M 3 -73.977 -43.513 9.741 0.5 61.2 ? N1 RHQ 201 A 1 HETATM 31 C C14 RHQ . A . M 3 -63.452 -46.118 5.431 0.5 82.54 ? C14 RHQ 201 A 1 HETATM 32 C C14 RHQ . B . M 3 -70.716 -48.158 6.747 0.5 61.1 ? C14 RHQ 201 A 1 HETATM 33 C C15 RHQ . A . M 3 -63.043 -47.292 6.047 0.5 82.69 ? C15 RHQ 201 A 1 HETATM 34 C C15 RHQ . B . M 3 -71.497 -48.786 5.777 0.5 60.92 ? C15 RHQ 201 A 1 HETATM 35 C C16 RHQ . A . M 3 -62.958 -47.382 7.427 0.5 83.19 ? C16 RHQ 201 A 1 HETATM 36 C C16 RHQ . B . M 3 -71.655 -50.168 5.773 0.5 60.62 ? C16 RHQ 201 A 1 HETATM 37 C C17 RHQ . A . M 3 -63.305 -46.293 8.209 0.5 82.95 ? C17 RHQ 201 A 1 HETATM 38 C C17 RHQ . B . M 3 -71.03 -50.927 6.75 0.5 60.77 ? C17 RHQ 201 A 1 HETATM 39 C C18 RHQ . A . M 3 -63.732 -45.123 7.604 0.5 83.08 ? C18 RHQ 201 A 1 HETATM 40 C C18 RHQ . B . M 3 -70.254 -50.296 7.721 0.5 61.72 ? C18 RHQ 201 A 1 HETATM 41 C C19 RHQ . A . M 3 -63.817 -45.024 6.218 0.5 83.33 ? C19 RHQ 201 A 1 HETATM 42 C C19 RHQ . B . M 3 -70.092 -48.91 7.731 0.5 61.27 ? C19 RHQ 201 A 1 HETATM 43 C C20 RHQ . A . M 3 -68.261 -47.496 4.483 0.5 82.48 ? C20 RHQ 201 A 1 HETATM 44 C C20 RHQ . B . M 3 -74.239 -46.261 9.96 0.5 61.14 ? C20 RHQ 201 A 1 HETATM 45 C C21 RHQ . A . M 3 -58.831 -44.863 2.985 0.5 82.32 ? C21 RHQ 201 A 1 HETATM 46 C C21 RHQ . B . M 3 -66.97 -46.919 3.412 0.5 61.21 ? C21 RHQ 201 A 1 HETATM 47 C C22 RHQ . A . M 3 -68.743 -47.737 0.312 0.5 82.55 ? C22 RHQ 201 A 1 HETATM 48 C C22 RHQ . B . M 3 -74.042 -42.06 9.807 0.5 61.21 ? C22 RHQ 201 A 1 HETATM 49 C C23 RHQ . A . M 3 -69.696 -48.907 0.184 0.5 83.16 ? C23 RHQ 201 A 1 HETATM 50 C C23 RHQ . B . M 3 -75.338 -41.661 10.488 0.5 60.67 ? C23 RHQ 201 A 1 HETATM 51 N N2 RHQ . A . M 3 -59.487 -45.114 0.269 0.5 82.46 ? N2 RHQ 201 A 1 HETATM 52 N N2 RHQ . B . M 3 -67.029 -43.872 3.497 0.5 61.24 ? N2 RHQ 201 A 1 HETATM 53 C C24 RHQ . A . M 3 -59.648 -45.199 -1.177 0.5 82.38 ? C24 RHQ 201 A 1 HETATM 54 C C24 RHQ . B . M 3 -65.996 -44.289 2.553 0.5 61.17 ? C24 RHQ 201 A 1 HETATM 55 C C25 RHQ . A . M 3 -58.289 -45.216 -1.836 0.5 81.91 ? C25 RHQ 201 A 1 HETATM 56 C C25 RHQ . B . M 3 -64.813 -44.892 3.277 0.5 61.74 ? C25 RHQ 201 A 1 HETATM 57 C C26 RHQ . A . M 3 -64.308 -43.715 5.663 0.5 83.76 ? C26 RHQ 201 A 1 HETATM 58 C C26 RHQ . B . M 3 -69.234 -48.274 8.792 0.5 60.8 ? C26 RHQ 201 A 1 HETATM 59 O O27 RHQ . A . M 3 -63.917 -43.275 4.598 0.5 85.19 ? O27 RHQ 201 A 1 HETATM 60 O O27 RHQ . B . M 3 -68.496 -47.337 8.551 0.5 59.67 ? O27 RHQ 201 A 1 HETATM 61 O O2 RHQ . A . M 3 -65.28 -42.938 6.422 0.5 84.86 ? O2 RHQ 201 A 1 HETATM 62 O O2 RHQ . B . M 3 -69.223 -48.794 10.14 0.5 61.69 ? O2 RHQ 201 A 1 HETATM 63 C C28 RHQ . A . M 3 -66.448 -43.553 6.981 0.5 85.82 ? C28 RHQ 201 A 1 HETATM 64 C C28 RHQ . B . M 3 -68.068 -49.507 10.573 0.5 62.45 ? C28 RHQ 201 A 1 HETATM 65 C C29 RHQ . A . M 3 -66.451 -43.419 8.492 0.5 85.48 ? C29 RHQ 201 A 1 HETATM 66 C C29 RHQ . B . M 3 -68.448 -50.934 10.901 0.5 62.84 ? C29 RHQ 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 66 #