data_3BRB # _model_server_result.job_id e7_13nIGchF2xdcBsEZdwA _model_server_result.datetime_utc '2024-12-04 21:48:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3brb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3}' # _entry.id 3BRB # _exptl.entry_id 3BRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.09 _cell.angle_gamma 90 _cell.entry_id 3BRB _cell.length_a 53.385 _cell.length_b 89.88 _cell.length_c 69.537 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MG MG . A MG 10 1_555 M O HOH . A HOH 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 E MG MG . A MG 10 1_555 M O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 E MG MG . A MG 10 1_555 A OD1 ASN 177 A ASN 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc4 E MG MG . A MG 10 1_555 A OD2 ASP 190 A ASP 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 E MG MG . A MG 10 1_555 F O1A ADP . A ADP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 E MG MG . A MG 10 1_555 F O2B ADP . A ADP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc7 K MG MG . B MG 9 1_555 N O HOH . B HOH 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc8 K MG MG . B MG 9 1_555 N O HOH . B HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc9 K MG MG . B MG 9 1_555 B ND2 ASN 177 B ASN 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc10 K MG MG . B MG 9 1_555 B OD2 ASP 190 B ASP 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc11 K MG MG . B MG 9 1_555 L O1A ADP . B ADP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc12 K MG MG . B MG 9 1_555 L O2B ADP . B ADP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 3BRB _atom_sites.fract_transf_matrix[1][1] 0.018732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004357 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 4 4 CL CL . D 2 CL A 1 5 5 CL CL . E 3 MG A 1 10 10 MG MG . F 4 ADP A 1 901 1 ADP ADP . G 5 GOL A 1 3 3 GOL GOL . H 2 CL B 1 6 6 CL CL . I 2 CL B 1 7 7 CL CL . J 2 CL B 1 8 8 CL CL . K 3 MG B 1 9 9 MG MG . L 4 ADP B 1 901 2 ADP ADP . M 6 HOH A 1 11 11 HOH HOH . M 6 HOH A 2 12 12 HOH HOH . M 6 HOH A 3 13 13 HOH HOH . M 6 HOH A 4 16 16 HOH HOH . M 6 HOH A 5 17 17 HOH HOH . M 6 HOH A 6 20 20 HOH HOH . M 6 HOH A 7 21 21 HOH HOH . M 6 HOH A 8 27 27 HOH HOH . M 6 HOH A 9 28 28 HOH HOH . M 6 HOH A 10 31 31 HOH HOH . M 6 HOH A 11 32 32 HOH HOH . M 6 HOH A 12 33 33 HOH HOH . M 6 HOH A 13 34 34 HOH HOH . M 6 HOH A 14 35 35 HOH HOH . M 6 HOH A 15 36 36 HOH HOH . M 6 HOH A 16 37 37 HOH HOH . M 6 HOH A 17 38 38 HOH HOH . M 6 HOH A 18 44 44 HOH HOH . M 6 HOH A 19 51 51 HOH HOH . M 6 HOH A 20 52 52 HOH HOH . M 6 HOH A 21 53 53 HOH HOH . M 6 HOH A 22 56 56 HOH HOH . M 6 HOH A 23 57 57 HOH HOH . M 6 HOH A 24 66 66 HOH HOH . M 6 HOH A 25 68 68 HOH HOH . M 6 HOH A 26 70 70 HOH HOH . M 6 HOH A 27 72 72 HOH HOH . M 6 HOH A 28 74 74 HOH HOH . M 6 HOH A 29 77 77 HOH HOH . M 6 HOH A 30 78 78 HOH HOH . M 6 HOH A 31 79 79 HOH HOH . M 6 HOH A 32 81 81 HOH HOH . M 6 HOH A 33 83 83 HOH HOH . M 6 HOH A 34 84 84 HOH HOH . M 6 HOH A 35 86 86 HOH HOH . M 6 HOH A 36 89 89 HOH HOH . M 6 HOH A 37 91 91 HOH HOH . M 6 HOH A 38 92 92 HOH HOH . M 6 HOH A 39 93 93 HOH HOH . M 6 HOH A 40 95 95 HOH HOH . M 6 HOH A 41 97 97 HOH HOH . M 6 HOH A 42 98 98 HOH HOH . M 6 HOH A 43 99 99 HOH HOH . M 6 HOH A 44 101 101 HOH HOH . M 6 HOH A 45 103 103 HOH HOH . M 6 HOH A 46 104 104 HOH HOH . M 6 HOH A 47 105 105 HOH HOH . M 6 HOH A 48 110 110 HOH HOH . M 6 HOH A 49 112 112 HOH HOH . M 6 HOH A 50 114 114 HOH HOH . M 6 HOH A 51 118 118 HOH HOH . M 6 HOH A 52 120 120 HOH HOH . M 6 HOH A 53 124 124 HOH HOH . M 6 HOH A 54 125 125 HOH HOH . M 6 HOH A 55 127 127 HOH HOH . M 6 HOH A 56 129 129 HOH HOH . M 6 HOH A 57 130 130 HOH HOH . M 6 HOH A 58 132 132 HOH HOH . M 6 HOH A 59 134 134 HOH HOH . M 6 HOH A 60 136 136 HOH HOH . M 6 HOH A 61 138 138 HOH HOH . M 6 HOH A 62 142 142 HOH HOH . M 6 HOH A 63 143 143 HOH HOH . M 6 HOH A 64 144 144 HOH HOH . M 6 HOH A 65 145 145 HOH HOH . M 6 HOH A 66 146 146 HOH HOH . M 6 HOH A 67 148 148 HOH HOH . M 6 HOH A 68 149 149 HOH HOH . M 6 HOH A 69 150 150 HOH HOH . M 6 HOH A 70 152 152 HOH HOH . M 6 HOH A 71 153 153 HOH HOH . M 6 HOH A 72 155 155 HOH HOH . M 6 HOH A 73 161 161 HOH HOH . M 6 HOH A 74 164 164 HOH HOH . M 6 HOH A 75 165 165 HOH HOH . M 6 HOH A 76 166 166 HOH HOH . M 6 HOH A 77 171 171 HOH HOH . M 6 HOH A 78 172 172 HOH HOH . M 6 HOH A 79 173 173 HOH HOH . M 6 HOH A 80 175 175 HOH HOH . M 6 HOH A 81 176 176 HOH HOH . M 6 HOH A 82 180 180 HOH HOH . M 6 HOH A 83 182 182 HOH HOH . M 6 HOH A 84 183 183 HOH HOH . M 6 HOH A 85 184 184 HOH HOH . M 6 HOH A 86 185 185 HOH HOH . M 6 HOH A 87 186 186 HOH HOH . M 6 HOH A 88 187 187 HOH HOH . M 6 HOH A 89 193 193 HOH HOH . M 6 HOH A 90 194 194 HOH HOH . M 6 HOH A 91 196 196 HOH HOH . M 6 HOH A 92 197 197 HOH HOH . M 6 HOH A 93 198 198 HOH HOH . M 6 HOH A 94 200 200 HOH HOH . M 6 HOH A 95 201 201 HOH HOH . M 6 HOH A 96 202 202 HOH HOH . M 6 HOH A 97 204 204 HOH HOH . M 6 HOH A 98 207 207 HOH HOH . M 6 HOH A 99 208 208 HOH HOH . M 6 HOH A 100 210 210 HOH HOH . M 6 HOH A 101 211 211 HOH HOH . M 6 HOH A 102 212 212 HOH HOH . M 6 HOH A 103 213 213 HOH HOH . M 6 HOH A 104 214 214 HOH HOH . M 6 HOH A 105 218 218 HOH HOH . M 6 HOH A 106 219 219 HOH HOH . M 6 HOH A 107 221 221 HOH HOH . M 6 HOH A 108 223 223 HOH HOH . M 6 HOH A 109 226 226 HOH HOH . M 6 HOH A 110 231 231 HOH HOH . M 6 HOH A 111 232 232 HOH HOH . M 6 HOH A 112 240 240 HOH HOH . N 6 HOH B 1 14 14 HOH HOH . N 6 HOH B 2 15 15 HOH HOH . N 6 HOH B 3 18 18 HOH HOH . N 6 HOH B 4 19 19 HOH HOH . N 6 HOH B 5 22 22 HOH HOH . N 6 HOH B 6 23 23 HOH HOH . N 6 HOH B 7 24 24 HOH HOH . N 6 HOH B 8 25 25 HOH HOH . N 6 HOH B 9 26 26 HOH HOH . N 6 HOH B 10 29 29 HOH HOH . N 6 HOH B 11 30 30 HOH HOH . N 6 HOH B 12 39 39 HOH HOH . N 6 HOH B 13 40 40 HOH HOH . N 6 HOH B 14 41 41 HOH HOH . N 6 HOH B 15 42 42 HOH HOH . N 6 HOH B 16 43 43 HOH HOH . N 6 HOH B 17 45 45 HOH HOH . N 6 HOH B 18 46 46 HOH HOH . N 6 HOH B 19 47 47 HOH HOH . N 6 HOH B 20 48 48 HOH HOH . N 6 HOH B 21 49 49 HOH HOH . N 6 HOH B 22 50 50 HOH HOH . N 6 HOH B 23 54 54 HOH HOH . N 6 HOH B 24 55 55 HOH HOH . N 6 HOH B 25 58 58 HOH HOH . N 6 HOH B 26 59 59 HOH HOH . N 6 HOH B 27 60 60 HOH HOH . N 6 HOH B 28 61 61 HOH HOH . N 6 HOH B 29 62 62 HOH HOH . N 6 HOH B 30 63 63 HOH HOH . N 6 HOH B 31 64 64 HOH HOH . N 6 HOH B 32 65 65 HOH HOH . N 6 HOH B 33 67 67 HOH HOH . N 6 HOH B 34 69 69 HOH HOH . N 6 HOH B 35 71 71 HOH HOH . N 6 HOH B 36 73 73 HOH HOH . N 6 HOH B 37 75 75 HOH HOH . N 6 HOH B 38 76 76 HOH HOH . N 6 HOH B 39 80 80 HOH HOH . N 6 HOH B 40 82 82 HOH HOH . N 6 HOH B 41 85 85 HOH HOH . N 6 HOH B 42 87 87 HOH HOH . N 6 HOH B 43 88 88 HOH HOH . N 6 HOH B 44 90 90 HOH HOH . N 6 HOH B 45 94 94 HOH HOH . N 6 HOH B 46 96 96 HOH HOH . N 6 HOH B 47 100 100 HOH HOH . N 6 HOH B 48 102 102 HOH HOH . N 6 HOH B 49 106 106 HOH HOH . N 6 HOH B 50 107 107 HOH HOH . N 6 HOH B 51 108 108 HOH HOH . N 6 HOH B 52 109 109 HOH HOH . N 6 HOH B 53 111 111 HOH HOH . N 6 HOH B 54 113 113 HOH HOH . N 6 HOH B 55 115 115 HOH HOH . N 6 HOH B 56 116 116 HOH HOH . N 6 HOH B 57 117 117 HOH HOH . N 6 HOH B 58 119 119 HOH HOH . N 6 HOH B 59 121 121 HOH HOH . N 6 HOH B 60 122 122 HOH HOH . N 6 HOH B 61 123 123 HOH HOH . N 6 HOH B 62 126 126 HOH HOH . N 6 HOH B 63 128 128 HOH HOH . N 6 HOH B 64 131 131 HOH HOH . N 6 HOH B 65 133 133 HOH HOH . N 6 HOH B 66 135 135 HOH HOH . N 6 HOH B 67 137 137 HOH HOH . N 6 HOH B 68 139 139 HOH HOH . N 6 HOH B 69 140 140 HOH HOH . N 6 HOH B 70 141 141 HOH HOH . N 6 HOH B 71 147 147 HOH HOH . N 6 HOH B 72 151 151 HOH HOH . N 6 HOH B 73 154 154 HOH HOH . N 6 HOH B 74 156 156 HOH HOH . N 6 HOH B 75 157 157 HOH HOH . N 6 HOH B 76 158 158 HOH HOH . N 6 HOH B 77 159 159 HOH HOH . N 6 HOH B 78 160 160 HOH HOH . N 6 HOH B 79 162 162 HOH HOH . N 6 HOH B 80 163 163 HOH HOH . N 6 HOH B 81 167 167 HOH HOH . N 6 HOH B 82 168 168 HOH HOH . N 6 HOH B 83 169 169 HOH HOH . N 6 HOH B 84 170 170 HOH HOH . N 6 HOH B 85 174 174 HOH HOH . N 6 HOH B 86 177 177 HOH HOH . N 6 HOH B 87 178 178 HOH HOH . N 6 HOH B 88 179 179 HOH HOH . N 6 HOH B 89 181 181 HOH HOH . N 6 HOH B 90 188 188 HOH HOH . N 6 HOH B 91 189 189 HOH HOH . N 6 HOH B 92 190 190 HOH HOH . N 6 HOH B 93 191 191 HOH HOH . N 6 HOH B 94 192 192 HOH HOH . N 6 HOH B 95 195 195 HOH HOH . N 6 HOH B 96 199 199 HOH HOH . N 6 HOH B 97 203 203 HOH HOH . N 6 HOH B 98 205 205 HOH HOH . N 6 HOH B 99 206 206 HOH HOH . N 6 HOH B 100 209 209 HOH HOH . N 6 HOH B 101 215 215 HOH HOH . N 6 HOH B 102 216 216 HOH HOH . N 6 HOH B 103 217 217 HOH HOH . N 6 HOH B 104 220 220 HOH HOH . N 6 HOH B 105 222 222 HOH HOH . N 6 HOH B 106 224 224 HOH HOH . N 6 HOH B 107 225 225 HOH HOH . N 6 HOH B 108 227 227 HOH HOH . N 6 HOH B 109 228 228 HOH HOH . N 6 HOH B 110 229 229 HOH HOH . N 6 HOH B 111 230 230 HOH HOH . N 6 HOH B 112 233 233 HOH HOH . N 6 HOH B 113 234 234 HOH HOH . N 6 HOH B 114 235 235 HOH HOH . N 6 HOH B 115 236 236 HOH HOH . N 6 HOH B 116 237 237 HOH HOH . N 6 HOH B 117 238 238 HOH HOH . N 6 HOH B 118 239 239 HOH HOH . N 6 HOH B 119 241 241 HOH HOH . N 6 HOH B 120 242 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 4.489 -7.65 0.151 1 62.23 ? C1 GOL 3 A 1 HETATM 2 O O1 GOL . . . G 5 3.373 -7.969 0.964 1 64.24 ? O1 GOL 3 A 1 HETATM 3 C C2 GOL . . . G 5 5.812 -8.215 0.689 1 63.84 ? C2 GOL 3 A 1 HETATM 4 O O2 GOL . . . G 5 6.178 -9.407 0 1 66.1 ? O2 GOL 3 A 1 HETATM 5 C C3 GOL . . . G 5 6.931 -7.164 0.599 1 61.19 ? C3 GOL 3 A 1 HETATM 6 O O3 GOL . . . G 5 7.781 -7.353 -0.524 1 52.71 ? O3 GOL 3 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #