data_3BRD # _model_server_result.job_id ziAFHo6C5roJd21OWMwzlQ _model_server_result.datetime_utc '2024-10-25 20:19:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3brd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":16}' # _entry.id 3BRD # _exptl.entry_id 3BRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BRD _cell.length_a 60.153 _cell.length_b 98.866 _cell.length_c 126.313 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DA 3 B DA 3 1_555 B N3 DT 15 C DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 3 B DA 3 1_555 B O4 DT 15 C DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 4 B DC 4 1_555 B N1 DG 14 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 4 B DC 4 1_555 B O6 DG 14 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 4 B DC 4 1_555 B N2 DG 14 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 5 B DT 5 1_555 B N1 DA 13 C DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 5 B DT 5 1_555 B N6 DA 13 C DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 6 B DG 6 1_555 B N3 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 6 B DG 6 1_555 B O2 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 6 B DG 6 1_555 B N4 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 7 B DT 7 1_555 B N1 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 7 B DT 7 1_555 B N6 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 8 B DG 8 1_555 B N3 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 8 B DG 8 1_555 B O2 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 8 B DG 8 1_555 B N4 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 9 B DG 9 1_555 B N3 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 9 B DG 9 1_555 B O2 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 9 B DG 9 1_555 B N4 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 10 B DG 10 1_555 B N3 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 10 B DG 10 1_555 B O2 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 10 B DG 10 1_555 B N4 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DA 11 B DA 11 1_555 B N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N6 DA 11 B DA 11 1_555 B O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DA 12 B DA 12 1_555 B N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N6 DA 12 B DA 12 1_555 B O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DA 13 B DA 13 1_555 B N3 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N6 DA 13 B DA 13 1_555 B O4 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 14 B DG 14 1_555 B N3 DC 4 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 14 B DG 14 1_555 B O2 DC 4 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 14 B DG 14 1_555 B N4 DC 4 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N1 DA 15 B DA 15 1_555 B N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N6 DA 15 B DA 15 1_555 B O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 232 n n C1 C2 EDO sing 233 n n C1 H11 EDO sing 234 n n C1 H12 EDO sing 235 n n O1 HO1 EDO sing 236 n n C2 O2 EDO sing 237 n n C2 H21 EDO sing 238 n n C2 H22 EDO sing 239 n n O2 HO2 EDO sing 240 n n # _atom_sites.entry_id 3BRD _atom_sites.fract_transf_matrix[1][1] 0.016624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 EDO C 1 16 7 EDO EDO . F 5 EDO A 1 1 1 EDO EDO . G 5 EDO A 1 2 2 EDO EDO . H 5 EDO A 1 3 3 EDO EDO . I 5 EDO A 1 4 4 EDO EDO . J 5 EDO A 1 5 5 EDO EDO . K 5 EDO A 1 8 8 EDO EDO . L 5 EDO A 1 9 9 EDO EDO . M 5 EDO A 1 10 10 EDO EDO . N 5 EDO D 1 6 6 EDO EDO . O 6 HOH B 1 16 16 HOH HOH . O 6 HOH B 2 19 19 HOH HOH . O 6 HOH B 3 22 22 HOH HOH . O 6 HOH B 4 23 23 HOH HOH . O 6 HOH B 5 36 36 HOH HOH . O 6 HOH B 6 37 37 HOH HOH . O 6 HOH B 7 38 38 HOH HOH . O 6 HOH B 8 45 45 HOH HOH . O 6 HOH B 9 77 77 HOH HOH . O 6 HOH B 10 79 79 HOH HOH . O 6 HOH B 11 81 81 HOH HOH . O 6 HOH B 12 84 84 HOH HOH . O 6 HOH B 13 89 89 HOH HOH . O 6 HOH B 14 90 90 HOH HOH . O 6 HOH B 15 95 95 HOH HOH . O 6 HOH B 16 97 97 HOH HOH . O 6 HOH B 17 107 107 HOH HOH . O 6 HOH B 18 108 108 HOH HOH . O 6 HOH B 19 110 110 HOH HOH . O 6 HOH B 20 112 112 HOH HOH . O 6 HOH B 21 119 119 HOH HOH . O 6 HOH B 22 125 125 HOH HOH . O 6 HOH B 23 130 130 HOH HOH . O 6 HOH B 24 132 132 HOH HOH . P 6 HOH C 1 17 2 HOH HOH . P 6 HOH C 2 18 10 HOH HOH . P 6 HOH C 3 19 21 HOH HOH . P 6 HOH C 4 20 86 HOH HOH . P 6 HOH C 5 21 98 HOH HOH . P 6 HOH C 6 22 111 HOH HOH . P 6 HOH C 7 23 122 HOH HOH . P 6 HOH C 8 24 129 HOH HOH . P 6 HOH C 9 25 135 HOH HOH . Q 6 HOH A 1 664 1 HOH HOH . Q 6 HOH A 2 665 3 HOH HOH . Q 6 HOH A 3 666 4 HOH HOH . Q 6 HOH A 4 667 5 HOH HOH . Q 6 HOH A 5 668 6 HOH HOH . Q 6 HOH A 6 669 7 HOH HOH . Q 6 HOH A 7 670 8 HOH HOH . Q 6 HOH A 8 671 9 HOH HOH . Q 6 HOH A 9 672 11 HOH HOH . Q 6 HOH A 10 673 12 HOH HOH . Q 6 HOH A 11 674 13 HOH HOH . Q 6 HOH A 12 675 14 HOH HOH . Q 6 HOH A 13 676 15 HOH HOH . Q 6 HOH A 14 677 17 HOH HOH . Q 6 HOH A 15 678 18 HOH HOH . Q 6 HOH A 16 679 20 HOH HOH . Q 6 HOH A 17 680 24 HOH HOH . Q 6 HOH A 18 681 25 HOH HOH . Q 6 HOH A 19 682 26 HOH HOH . Q 6 HOH A 20 683 27 HOH HOH . Q 6 HOH A 21 684 28 HOH HOH . Q 6 HOH A 22 685 29 HOH HOH . Q 6 HOH A 23 686 30 HOH HOH . Q 6 HOH A 24 687 31 HOH HOH . Q 6 HOH A 25 688 32 HOH HOH . Q 6 HOH A 26 689 33 HOH HOH . Q 6 HOH A 27 690 34 HOH HOH . Q 6 HOH A 28 691 35 HOH HOH . Q 6 HOH A 29 692 39 HOH HOH . Q 6 HOH A 30 693 40 HOH HOH . Q 6 HOH A 31 694 41 HOH HOH . Q 6 HOH A 32 695 42 HOH HOH . Q 6 HOH A 33 696 43 HOH HOH . Q 6 HOH A 34 697 44 HOH HOH . Q 6 HOH A 35 698 46 HOH HOH . Q 6 HOH A 36 699 47 HOH HOH . Q 6 HOH A 37 700 49 HOH HOH . Q 6 HOH A 38 701 50 HOH HOH . Q 6 HOH A 39 702 51 HOH HOH . Q 6 HOH A 40 703 52 HOH HOH . Q 6 HOH A 41 704 53 HOH HOH . Q 6 HOH A 42 705 54 HOH HOH . Q 6 HOH A 43 706 55 HOH HOH . Q 6 HOH A 44 707 56 HOH HOH . Q 6 HOH A 45 708 57 HOH HOH . Q 6 HOH A 46 709 58 HOH HOH . Q 6 HOH A 47 710 59 HOH HOH . Q 6 HOH A 48 711 60 HOH HOH . Q 6 HOH A 49 712 61 HOH HOH . Q 6 HOH A 50 713 62 HOH HOH . Q 6 HOH A 51 714 63 HOH HOH . Q 6 HOH A 52 715 64 HOH HOH . Q 6 HOH A 53 716 65 HOH HOH . Q 6 HOH A 54 717 66 HOH HOH . Q 6 HOH A 55 718 67 HOH HOH . Q 6 HOH A 56 719 68 HOH HOH . Q 6 HOH A 57 720 69 HOH HOH . Q 6 HOH A 58 721 70 HOH HOH . Q 6 HOH A 59 722 71 HOH HOH . Q 6 HOH A 60 723 72 HOH HOH . Q 6 HOH A 61 724 73 HOH HOH . Q 6 HOH A 62 725 74 HOH HOH . Q 6 HOH A 63 726 80 HOH HOH . Q 6 HOH A 64 727 82 HOH HOH . Q 6 HOH A 65 728 83 HOH HOH . Q 6 HOH A 66 729 85 HOH HOH . Q 6 HOH A 67 730 87 HOH HOH . Q 6 HOH A 68 731 88 HOH HOH . Q 6 HOH A 69 732 92 HOH HOH . Q 6 HOH A 70 733 94 HOH HOH . Q 6 HOH A 71 734 96 HOH HOH . Q 6 HOH A 72 735 99 HOH HOH . Q 6 HOH A 73 736 100 HOH HOH . Q 6 HOH A 74 737 101 HOH HOH . Q 6 HOH A 75 738 102 HOH HOH . Q 6 HOH A 76 739 103 HOH HOH . Q 6 HOH A 77 740 104 HOH HOH . Q 6 HOH A 78 741 105 HOH HOH . Q 6 HOH A 79 742 106 HOH HOH . Q 6 HOH A 80 743 109 HOH HOH . Q 6 HOH A 81 744 113 HOH HOH . Q 6 HOH A 82 745 114 HOH HOH . Q 6 HOH A 83 746 115 HOH HOH . Q 6 HOH A 84 747 116 HOH HOH . Q 6 HOH A 85 748 117 HOH HOH . Q 6 HOH A 86 749 118 HOH HOH . Q 6 HOH A 87 750 120 HOH HOH . Q 6 HOH A 88 751 121 HOH HOH . Q 6 HOH A 89 752 123 HOH HOH . Q 6 HOH A 90 753 124 HOH HOH . Q 6 HOH A 91 754 126 HOH HOH . Q 6 HOH A 92 755 127 HOH HOH . Q 6 HOH A 93 756 128 HOH HOH . Q 6 HOH A 94 757 131 HOH HOH . Q 6 HOH A 95 758 133 HOH HOH . Q 6 HOH A 96 759 134 HOH HOH . Q 6 HOH A 97 760 136 HOH HOH . Q 6 HOH A 98 761 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 34.852 15.361 18.835 1 73.17 ? C1 EDO 16 C 1 HETATM 2 O O1 EDO . . . E 5 34.779 15.72 20.223 1 71.76 ? O1 EDO 16 C 1 HETATM 3 C C2 EDO . . . E 5 36.158 15.89 18.22 1 75.62 ? C2 EDO 16 C 1 HETATM 4 O O2 EDO . . . E 5 36.997 14.825 17.734 1 74.95 ? O2 EDO 16 C 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #