data_3BRF # _model_server_result.job_id qrl6MWV8Nl-z117zlsTnEw _model_server_result.datetime_utc '2024-11-04 22:46:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3brf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 3BRF # _exptl.entry_id 3BRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 182.172 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description sorbitol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BRF _cell.length_a 62.944 _cell.length_b 95.972 _cell.length_c 223.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DA 3 B DA 3 1_555 B N3 DT 15 C DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 3 B DA 3 1_555 B O4 DT 15 C DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 4 B DC 4 1_555 B N1 DG 14 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 4 B DC 4 1_555 B O6 DG 14 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 4 B DC 4 1_555 B N2 DG 14 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 5 B DT 5 1_555 B N1 DA 13 C DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 5 B DT 5 1_555 B N6 DA 13 C DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 6 B DG 6 1_555 B N3 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 6 B DG 6 1_555 B O2 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 6 B DG 6 1_555 B N4 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 7 B DT 7 1_555 B N1 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 7 B DT 7 1_555 B N6 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 8 B DG 8 1_555 B N3 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 8 B DG 8 1_555 B O2 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 8 B DG 8 1_555 B N4 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 9 B DG 9 1_555 B N3 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 9 B DG 9 1_555 B O2 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 9 B DG 9 1_555 B N4 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 10 B DG 10 1_555 B N3 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 10 B DG 10 1_555 B O2 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 10 B DG 10 1_555 B N4 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DA 11 B DA 11 1_555 B N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N6 DA 11 B DA 11 1_555 B O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DA 12 B DA 12 1_555 B N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N6 DA 12 B DA 12 1_555 B O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DA 13 B DA 13 1_555 B N3 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N6 DA 13 B DA 13 1_555 B O4 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 14 B DG 14 1_555 B N3 DC 4 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 14 B DG 14 1_555 B O2 DC 4 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 14 B DG 14 1_555 B N4 DC 4 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N1 DA 15 B DA 15 1_555 B N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N6 DA 15 B DA 15 1_555 B O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H14 O6' _chem_comp.formula_weight 182.172 _chem_comp.id SOR _chem_comp.mon_nstd_flag . _chem_comp.name sorbitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms D-sorbitol;D-glucitol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SOR sing 439 n n C1 O1 SOR sing 440 n n C1 H11 SOR sing 441 n n C1 H12 SOR sing 442 n n C2 C3 SOR sing 443 n n C2 O2 SOR sing 444 n n C2 H2 SOR sing 445 n n C3 C4 SOR sing 446 n n C3 O3 SOR sing 447 n n C3 H3 SOR sing 448 n n C4 C5 SOR sing 449 n n C4 O4 SOR sing 450 n n C4 H4 SOR sing 451 n n C5 C6 SOR sing 452 n n C5 O5 SOR sing 453 n n C5 H5 SOR sing 454 n n C6 O6 SOR sing 455 n n C6 H61 SOR sing 456 n n C6 H62 SOR sing 457 n n O1 HO1 SOR sing 458 n n O2 HO2 SOR sing 459 n n O3 HO3 SOR sing 460 n n O4 HO4 SOR sing 461 n n O5 HO5 SOR sing 462 n n O6 HO6 SOR sing 463 n n # _atom_sites.entry_id 3BRF _atom_sites.fract_transf_matrix[1][1] 0.015887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SOR A 1 1 1 SOR SOR . F 5 SOR A 1 2 2 SOR SOR . G 6 HOH B 1 16 2 HOH HOH . G 6 HOH B 2 17 11 HOH HOH . G 6 HOH B 3 18 21 HOH HOH . G 6 HOH B 4 19 32 HOH HOH . G 6 HOH B 5 20 33 HOH HOH . G 6 HOH B 6 21 35 HOH HOH . G 6 HOH B 7 22 57 HOH HOH . H 6 HOH C 1 16 5 HOH HOH . H 6 HOH C 2 17 6 HOH HOH . H 6 HOH C 3 18 14 HOH HOH . H 6 HOH C 4 19 22 HOH HOH . H 6 HOH C 5 20 24 HOH HOH . H 6 HOH C 6 21 36 HOH HOH . H 6 HOH C 7 22 43 HOH HOH . H 6 HOH C 8 23 48 HOH HOH . H 6 HOH C 9 24 53 HOH HOH . H 6 HOH C 10 25 55 HOH HOH . H 6 HOH C 11 26 60 HOH HOH . I 6 HOH A 1 664 1 HOH HOH . I 6 HOH A 2 665 3 HOH HOH . I 6 HOH A 3 666 4 HOH HOH . I 6 HOH A 4 667 7 HOH HOH . I 6 HOH A 5 668 8 HOH HOH . I 6 HOH A 6 669 9 HOH HOH . I 6 HOH A 7 670 10 HOH HOH . I 6 HOH A 8 671 12 HOH HOH . I 6 HOH A 9 672 13 HOH HOH . I 6 HOH A 10 673 15 HOH HOH . I 6 HOH A 11 674 16 HOH HOH . I 6 HOH A 12 675 17 HOH HOH . I 6 HOH A 13 676 18 HOH HOH . I 6 HOH A 14 677 19 HOH HOH . I 6 HOH A 15 678 20 HOH HOH . I 6 HOH A 16 679 23 HOH HOH . I 6 HOH A 17 680 25 HOH HOH . I 6 HOH A 18 681 26 HOH HOH . I 6 HOH A 19 682 27 HOH HOH . I 6 HOH A 20 683 28 HOH HOH . I 6 HOH A 21 684 30 HOH HOH . I 6 HOH A 22 685 34 HOH HOH . I 6 HOH A 23 686 38 HOH HOH . I 6 HOH A 24 687 39 HOH HOH . I 6 HOH A 25 688 42 HOH HOH . I 6 HOH A 26 689 44 HOH HOH . I 6 HOH A 27 690 45 HOH HOH . I 6 HOH A 28 691 46 HOH HOH . I 6 HOH A 29 692 47 HOH HOH . I 6 HOH A 30 693 49 HOH HOH . I 6 HOH A 31 694 50 HOH HOH . I 6 HOH A 32 695 51 HOH HOH . I 6 HOH A 33 696 52 HOH HOH . I 6 HOH A 34 697 54 HOH HOH . I 6 HOH A 35 698 56 HOH HOH . I 6 HOH A 36 699 58 HOH HOH . I 6 HOH A 37 700 59 HOH HOH . I 6 HOH A 38 701 61 HOH HOH . I 6 HOH A 39 702 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SOR . . . F 5 -29.613 -17.173 47.165 1 60.65 ? C1 SOR 2 A 1 HETATM 2 C C2 SOR . . . F 5 -30.655 -18.189 47.655 1 62.41 ? C2 SOR 2 A 1 HETATM 3 C C3 SOR . . . F 5 -30.053 -19.573 47.895 1 64.13 ? C3 SOR 2 A 1 HETATM 4 C C4 SOR . . . F 5 -30.541 -20.088 49.236 1 66.74 ? C4 SOR 2 A 1 HETATM 5 C C5 SOR . . . F 5 -30.61 -21.616 49.19 1 68.39 ? C5 SOR 2 A 1 HETATM 6 C C6 SOR . . . F 5 -31.78 -22.162 50.028 1 71.07 ? C6 SOR 2 A 1 HETATM 7 O O1 SOR . . . F 5 -28.916 -17.728 46.078 1 57.09 ? O1 SOR 2 A 1 HETATM 8 O O2 SOR . . . F 5 -31.316 -17.75 48.832 1 58.28 ? O2 SOR 2 A 1 HETATM 9 O O3 SOR . . . F 5 -28.636 -19.583 47.899 1 64.53 ? O3 SOR 2 A 1 HETATM 10 O O4 SOR . . . F 5 -29.678 -19.564 50.241 1 65.95 ? O4 SOR 2 A 1 HETATM 11 O O5 SOR . . . F 5 -30.733 -22.001 47.833 1 67.39 ? O5 SOR 2 A 1 HETATM 12 O O6 SOR . . . F 5 -32.091 -23.521 49.731 1 71.74 ? O6 SOR 2 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #