data_3BRJ # _model_server_result.job_id gxiYqz_HlZDqiJfhzWvtMQ _model_server_result.datetime_utc '2025-03-23 23:52:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3brj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":174}' # _entry.id 3BRJ # _exptl.entry_id 3BRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BRJ _cell.length_a 63.281 _cell.length_b 63.281 _cell.length_c 227.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1 C,D,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 127 A LYS 124 1_555 A N MSE 128 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C MSE 128 A MSE 125 1_555 A N GLY 129 A GLY 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale3 A C GLY 129 A GLY 126 1_555 A N MSE 130 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 130 A MSE 127 1_555 A N VAL 131 A VAL 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 B C LYS 127 B LYS 124 1_555 B N MSE 128 B MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 B C MSE 128 B MSE 125 1_555 B N GLY 129 B GLY 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 B C GLY 129 B GLY 126 1_555 B N MSE 130 B MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale8 B C MSE 130 B MSE 127 1_555 B N VAL 131 B VAL 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 C C LYS 127 C LYS 124 1_555 C N MSE 128 C MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale10 C C MSE 128 C MSE 125 1_555 C N GLY 129 C GLY 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 C C GLY 129 C GLY 126 1_555 C N MSE 130 C MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 C C MSE 130 C MSE 127 1_555 C N VAL 131 C VAL 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale13 D C LYS 127 D LYS 124 1_555 D N MSE 128 D MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale14 D C MSE 128 D MSE 125 1_555 D N GLY 129 D GLY 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale15 D C GLY 129 D GLY 126 1_555 D N MSE 130 D MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 D C MSE 130 D MSE 127 1_555 D N VAL 131 D VAL 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 3BRJ _atom_sites.fract_transf_matrix[1][1] 0.015803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 173 3 EDO EDO . F 2 EDO B 1 173 4 EDO EDO . G 3 GOL B 1 174 1 GOL GOL . H 2 EDO C 1 173 1 EDO EDO . I 2 EDO D 1 173 2 EDO EDO . J 4 HOH A 1 174 1 HOH HOH . J 4 HOH A 2 175 2 HOH HOH . J 4 HOH A 3 176 9 HOH HOH . J 4 HOH A 4 177 10 HOH HOH . J 4 HOH A 5 178 14 HOH HOH . J 4 HOH A 6 179 17 HOH HOH . J 4 HOH A 7 180 19 HOH HOH . J 4 HOH A 8 181 27 HOH HOH . K 4 HOH B 1 175 3 HOH HOH . K 4 HOH B 2 176 5 HOH HOH . K 4 HOH B 3 177 8 HOH HOH . K 4 HOH B 4 178 13 HOH HOH . K 4 HOH B 5 179 15 HOH HOH . K 4 HOH B 6 180 22 HOH HOH . K 4 HOH B 7 181 24 HOH HOH . K 4 HOH B 8 182 29 HOH HOH . K 4 HOH B 9 183 30 HOH HOH . L 4 HOH C 1 174 7 HOH HOH . L 4 HOH C 2 175 11 HOH HOH . L 4 HOH C 3 176 18 HOH HOH . L 4 HOH C 4 177 26 HOH HOH . M 4 HOH D 1 174 4 HOH HOH . M 4 HOH D 2 175 6 HOH HOH . M 4 HOH D 3 176 12 HOH HOH . M 4 HOH D 4 177 16 HOH HOH . M 4 HOH D 5 178 20 HOH HOH . M 4 HOH D 6 179 21 HOH HOH . M 4 HOH D 7 180 23 HOH HOH . M 4 HOH D 8 181 25 HOH HOH . M 4 HOH D 9 182 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -5.635 38.453 135.392 1 42.55 ? C1 GOL 174 B 1 HETATM 2 O O1 GOL . . . G 3 -4.278 38.669 135.747 1 39.44 ? O1 GOL 174 B 1 HETATM 3 C C2 GOL . . . G 3 -6.617 38.126 136.55 1 43.05 ? C2 GOL 174 B 1 HETATM 4 O O2 GOL . . . G 3 -7.502 39.237 136.795 1 41 ? O2 GOL 174 B 1 HETATM 5 C C3 GOL . . . G 3 -7.36 36.833 136.117 1 42.73 ? C3 GOL 174 B 1 HETATM 6 O O3 GOL . . . G 3 -7.534 35.822 137.139 1 42.19 ? O3 GOL 174 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #