data_3BRM # _model_server_result.job_id ydXOBDVNxhyvhn8nBoysIg _model_server_result.datetime_utc '2024-11-26 16:31:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3brm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3BRM # _exptl.entry_id 3BRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 145.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-OXO-L-NORLEUCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BRM _cell.length_a 71.247 _cell.length_b 184.701 _cell.length_c 51.422 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 71.247 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 77 A SER 74 1_555 C CE ONL . A ONL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 B OG SER 77 B SER 74 1_555 D CE ONL . B ONL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C6 H11 N O3' _chem_comp.formula_weight 145.156 _chem_comp.id ONL _chem_comp.mon_nstd_flag . _chem_comp.name 5-OXO-L-NORLEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BRM _atom_sites.fract_transf_matrix[1][1] 0.014036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ONL A 1 401 401 ONL ONL . D 2 ONL B 1 401 401 ONL ONL . E 3 HOH A 1 402 2 HOH HOH . E 3 HOH A 2 403 5 HOH HOH . E 3 HOH A 3 404 9 HOH HOH . E 3 HOH A 4 405 10 HOH HOH . E 3 HOH A 5 406 12 HOH HOH . E 3 HOH A 6 407 14 HOH HOH . E 3 HOH A 7 408 16 HOH HOH . E 3 HOH A 8 409 22 HOH HOH . E 3 HOH A 9 410 23 HOH HOH . E 3 HOH A 10 411 24 HOH HOH . E 3 HOH A 11 412 25 HOH HOH . E 3 HOH A 12 413 27 HOH HOH . E 3 HOH A 13 414 29 HOH HOH . E 3 HOH A 14 415 33 HOH HOH . E 3 HOH A 15 416 41 HOH HOH . E 3 HOH A 16 417 42 HOH HOH . E 3 HOH A 17 418 43 HOH HOH . E 3 HOH A 18 419 48 HOH HOH . E 3 HOH A 19 420 49 HOH HOH . E 3 HOH A 20 421 51 HOH HOH . E 3 HOH A 21 422 52 HOH HOH . E 3 HOH A 22 423 59 HOH HOH . E 3 HOH A 23 424 61 HOH HOH . E 3 HOH A 24 425 62 HOH HOH . E 3 HOH A 25 427 68 HOH HOH . E 3 HOH A 26 428 69 HOH HOH . E 3 HOH A 27 429 74 HOH HOH . E 3 HOH A 28 430 75 HOH HOH . E 3 HOH A 29 431 80 HOH HOH . E 3 HOH A 30 432 81 HOH HOH . E 3 HOH A 31 433 82 HOH HOH . E 3 HOH A 32 434 85 HOH HOH . E 3 HOH A 33 435 86 HOH HOH . E 3 HOH A 34 436 89 HOH HOH . E 3 HOH A 35 437 91 HOH HOH . E 3 HOH A 36 438 92 HOH HOH . E 3 HOH A 37 439 93 HOH HOH . E 3 HOH A 38 440 94 HOH HOH . E 3 HOH A 39 441 97 HOH HOH . E 3 HOH A 40 442 99 HOH HOH . E 3 HOH A 41 443 102 HOH HOH . E 3 HOH A 42 444 104 HOH HOH . E 3 HOH A 43 445 108 HOH HOH . E 3 HOH A 44 446 111 HOH HOH . E 3 HOH A 45 447 112 HOH HOH . E 3 HOH A 46 448 113 HOH HOH . E 3 HOH A 47 449 122 HOH HOH . E 3 HOH A 48 450 124 HOH HOH . E 3 HOH A 49 451 125 HOH HOH . E 3 HOH A 50 452 126 HOH HOH . E 3 HOH A 51 453 127 HOH HOH . E 3 HOH A 52 454 133 HOH HOH . E 3 HOH A 53 455 134 HOH HOH . E 3 HOH A 54 456 135 HOH HOH . E 3 HOH A 55 458 138 HOH HOH . E 3 HOH A 56 459 140 HOH HOH . E 3 HOH A 57 460 142 HOH HOH . E 3 HOH A 58 461 143 HOH HOH . E 3 HOH A 59 462 146 HOH HOH . E 3 HOH A 60 463 148 HOH HOH . E 3 HOH A 61 464 153 HOH HOH . E 3 HOH A 62 465 155 HOH HOH . E 3 HOH A 63 466 159 HOH HOH . E 3 HOH A 64 467 160 HOH HOH . E 3 HOH A 65 468 161 HOH HOH . E 3 HOH A 66 469 162 HOH HOH . E 3 HOH A 67 470 164 HOH HOH . E 3 HOH A 68 471 165 HOH HOH . E 3 HOH A 69 472 166 HOH HOH . E 3 HOH A 70 473 168 HOH HOH . E 3 HOH A 71 474 169 HOH HOH . E 3 HOH A 72 475 171 HOH HOH . E 3 HOH A 73 476 172 HOH HOH . E 3 HOH A 74 477 174 HOH HOH . E 3 HOH A 75 478 180 HOH HOH . E 3 HOH A 76 479 182 HOH HOH . E 3 HOH A 77 480 183 HOH HOH . E 3 HOH A 78 481 184 HOH HOH . E 3 HOH A 79 482 186 HOH HOH . E 3 HOH A 80 483 187 HOH HOH . E 3 HOH A 81 484 189 HOH HOH . E 3 HOH A 82 485 191 HOH HOH . E 3 HOH A 83 486 193 HOH HOH . E 3 HOH A 84 487 194 HOH HOH . E 3 HOH A 85 488 197 HOH HOH . E 3 HOH A 86 489 198 HOH HOH . E 3 HOH A 87 490 200 HOH HOH . E 3 HOH A 88 491 201 HOH HOH . E 3 HOH A 89 492 202 HOH HOH . E 3 HOH A 90 493 203 HOH HOH . E 3 HOH A 91 494 207 HOH HOH . E 3 HOH A 92 495 208 HOH HOH . E 3 HOH A 93 496 209 HOH HOH . E 3 HOH A 94 497 214 HOH HOH . E 3 HOH A 95 498 215 HOH HOH . E 3 HOH A 96 499 217 HOH HOH . E 3 HOH A 97 500 218 HOH HOH . E 3 HOH A 98 501 220 HOH HOH . E 3 HOH A 99 502 221 HOH HOH . E 3 HOH A 100 503 222 HOH HOH . E 3 HOH A 101 504 223 HOH HOH . E 3 HOH A 102 505 227 HOH HOH . E 3 HOH A 103 506 228 HOH HOH . E 3 HOH A 104 507 229 HOH HOH . E 3 HOH A 105 508 234 HOH HOH . E 3 HOH A 106 509 235 HOH HOH . E 3 HOH A 107 510 238 HOH HOH . E 3 HOH A 108 511 239 HOH HOH . E 3 HOH A 109 512 242 HOH HOH . E 3 HOH A 110 513 244 HOH HOH . E 3 HOH A 111 514 246 HOH HOH . E 3 HOH A 112 515 248 HOH HOH . E 3 HOH A 113 516 250 HOH HOH . E 3 HOH A 114 517 251 HOH HOH . E 3 HOH A 115 518 252 HOH HOH . E 3 HOH A 116 519 253 HOH HOH . E 3 HOH A 117 520 255 HOH HOH . E 3 HOH A 118 521 1 HOH HOH . E 3 HOH A 119 522 2 HOH HOH . E 3 HOH A 120 523 5 HOH HOH . E 3 HOH A 121 524 6 HOH HOH . E 3 HOH A 122 525 7 HOH HOH . E 3 HOH A 123 526 10 HOH HOH . E 3 HOH A 124 527 13 HOH HOH . E 3 HOH A 125 528 17 HOH HOH . E 3 HOH A 126 529 18 HOH HOH . E 3 HOH A 127 530 19 HOH HOH . E 3 HOH A 128 531 23 HOH HOH . E 3 HOH A 129 532 28 HOH HOH . E 3 HOH A 130 533 29 HOH HOH . E 3 HOH A 131 534 32 HOH HOH . E 3 HOH A 132 535 34 HOH HOH . E 3 HOH A 133 536 36 HOH HOH . E 3 HOH A 134 537 37 HOH HOH . E 3 HOH A 135 538 38 HOH HOH . E 3 HOH A 136 539 40 HOH HOH . E 3 HOH A 137 540 41 HOH HOH . E 3 HOH A 138 541 48 HOH HOH . E 3 HOH A 139 542 49 HOH HOH . E 3 HOH A 140 543 50 HOH HOH . F 3 HOH B 1 426 67 HOH HOH . F 3 HOH B 2 427 136 HOH HOH . F 3 HOH B 3 428 1 HOH HOH . F 3 HOH B 4 429 3 HOH HOH . F 3 HOH B 5 430 4 HOH HOH . F 3 HOH B 6 431 8 HOH HOH . F 3 HOH B 7 432 11 HOH HOH . F 3 HOH B 8 433 13 HOH HOH . F 3 HOH B 9 434 15 HOH HOH . F 3 HOH B 10 435 17 HOH HOH . F 3 HOH B 11 436 18 HOH HOH . F 3 HOH B 12 437 19 HOH HOH . F 3 HOH B 13 438 20 HOH HOH . F 3 HOH B 14 439 21 HOH HOH . F 3 HOH B 15 440 26 HOH HOH . F 3 HOH B 16 441 28 HOH HOH . F 3 HOH B 17 442 30 HOH HOH . F 3 HOH B 18 443 32 HOH HOH . F 3 HOH B 19 444 35 HOH HOH . F 3 HOH B 20 445 36 HOH HOH . F 3 HOH B 21 446 37 HOH HOH . F 3 HOH B 22 447 38 HOH HOH . F 3 HOH B 23 448 39 HOH HOH . F 3 HOH B 24 449 44 HOH HOH . F 3 HOH B 25 450 45 HOH HOH . F 3 HOH B 26 451 46 HOH HOH . F 3 HOH B 27 452 47 HOH HOH . F 3 HOH B 28 453 50 HOH HOH . F 3 HOH B 29 454 53 HOH HOH . F 3 HOH B 30 455 54 HOH HOH . F 3 HOH B 31 456 55 HOH HOH . F 3 HOH B 32 457 56 HOH HOH . F 3 HOH B 33 458 57 HOH HOH . F 3 HOH B 34 459 60 HOH HOH . F 3 HOH B 35 460 63 HOH HOH . F 3 HOH B 36 461 64 HOH HOH . F 3 HOH B 37 462 65 HOH HOH . F 3 HOH B 38 463 66 HOH HOH . F 3 HOH B 39 464 70 HOH HOH . F 3 HOH B 40 465 71 HOH HOH . F 3 HOH B 41 466 72 HOH HOH . F 3 HOH B 42 467 73 HOH HOH . F 3 HOH B 43 468 76 HOH HOH . F 3 HOH B 44 469 77 HOH HOH . F 3 HOH B 45 470 79 HOH HOH . F 3 HOH B 46 471 83 HOH HOH . F 3 HOH B 47 472 84 HOH HOH . F 3 HOH B 48 473 87 HOH HOH . F 3 HOH B 49 474 88 HOH HOH . F 3 HOH B 50 475 90 HOH HOH . F 3 HOH B 51 476 95 HOH HOH . F 3 HOH B 52 477 96 HOH HOH . F 3 HOH B 53 478 98 HOH HOH . F 3 HOH B 54 479 100 HOH HOH . F 3 HOH B 55 480 101 HOH HOH . F 3 HOH B 56 481 103 HOH HOH . F 3 HOH B 57 482 105 HOH HOH . F 3 HOH B 58 483 106 HOH HOH . F 3 HOH B 59 484 107 HOH HOH . F 3 HOH B 60 485 109 HOH HOH . F 3 HOH B 61 486 110 HOH HOH . F 3 HOH B 62 487 116 HOH HOH . F 3 HOH B 63 488 117 HOH HOH . F 3 HOH B 64 489 118 HOH HOH . F 3 HOH B 65 490 120 HOH HOH . F 3 HOH B 66 491 121 HOH HOH . F 3 HOH B 67 492 123 HOH HOH . F 3 HOH B 68 493 128 HOH HOH . F 3 HOH B 69 494 129 HOH HOH . F 3 HOH B 70 495 130 HOH HOH . F 3 HOH B 71 496 131 HOH HOH . F 3 HOH B 72 497 132 HOH HOH . F 3 HOH B 73 498 137 HOH HOH . F 3 HOH B 74 499 139 HOH HOH . F 3 HOH B 75 500 141 HOH HOH . F 3 HOH B 76 501 145 HOH HOH . F 3 HOH B 77 502 147 HOH HOH . F 3 HOH B 78 503 149 HOH HOH . F 3 HOH B 79 504 150 HOH HOH . F 3 HOH B 80 505 151 HOH HOH . F 3 HOH B 81 506 152 HOH HOH . F 3 HOH B 82 507 154 HOH HOH . F 3 HOH B 83 508 156 HOH HOH . F 3 HOH B 84 509 157 HOH HOH . F 3 HOH B 85 510 158 HOH HOH . F 3 HOH B 86 511 163 HOH HOH . F 3 HOH B 87 512 167 HOH HOH . F 3 HOH B 88 513 170 HOH HOH . F 3 HOH B 89 514 173 HOH HOH . F 3 HOH B 90 515 175 HOH HOH . F 3 HOH B 91 516 176 HOH HOH . F 3 HOH B 92 517 177 HOH HOH . F 3 HOH B 93 518 178 HOH HOH . F 3 HOH B 94 519 179 HOH HOH . F 3 HOH B 95 520 181 HOH HOH . F 3 HOH B 96 521 185 HOH HOH . F 3 HOH B 97 522 188 HOH HOH . F 3 HOH B 98 523 190 HOH HOH . F 3 HOH B 99 524 195 HOH HOH . F 3 HOH B 100 525 196 HOH HOH . F 3 HOH B 101 526 199 HOH HOH . F 3 HOH B 102 527 204 HOH HOH . F 3 HOH B 103 528 205 HOH HOH . F 3 HOH B 104 529 206 HOH HOH . F 3 HOH B 105 530 210 HOH HOH . F 3 HOH B 106 531 211 HOH HOH . F 3 HOH B 107 532 212 HOH HOH . F 3 HOH B 108 533 213 HOH HOH . F 3 HOH B 109 534 216 HOH HOH . F 3 HOH B 110 535 219 HOH HOH . F 3 HOH B 111 536 224 HOH HOH . F 3 HOH B 112 537 225 HOH HOH . F 3 HOH B 113 538 226 HOH HOH . F 3 HOH B 114 539 230 HOH HOH . F 3 HOH B 115 540 231 HOH HOH . F 3 HOH B 116 541 232 HOH HOH . F 3 HOH B 117 542 233 HOH HOH . F 3 HOH B 118 543 236 HOH HOH . F 3 HOH B 119 544 237 HOH HOH . F 3 HOH B 120 545 240 HOH HOH . F 3 HOH B 121 546 241 HOH HOH . F 3 HOH B 122 547 243 HOH HOH . F 3 HOH B 123 548 245 HOH HOH . F 3 HOH B 124 549 247 HOH HOH . F 3 HOH B 125 550 249 HOH HOH . F 3 HOH B 126 551 254 HOH HOH . F 3 HOH B 127 552 256 HOH HOH . F 3 HOH B 128 553 1 HOH HOH . F 3 HOH B 129 554 3 HOH HOH . F 3 HOH B 130 555 4 HOH HOH . F 3 HOH B 131 556 8 HOH HOH . F 3 HOH B 132 557 9 HOH HOH . F 3 HOH B 133 558 11 HOH HOH . F 3 HOH B 134 559 12 HOH HOH . F 3 HOH B 135 560 14 HOH HOH . F 3 HOH B 136 561 15 HOH HOH . F 3 HOH B 137 562 16 HOH HOH . F 3 HOH B 138 563 20 HOH HOH . F 3 HOH B 139 564 21 HOH HOH . F 3 HOH B 140 565 22 HOH HOH . F 3 HOH B 141 566 24 HOH HOH . F 3 HOH B 142 567 25 HOH HOH . F 3 HOH B 143 568 26 HOH HOH . F 3 HOH B 144 569 27 HOH HOH . F 3 HOH B 145 570 30 HOH HOH . F 3 HOH B 146 571 31 HOH HOH . F 3 HOH B 147 572 33 HOH HOH . F 3 HOH B 148 573 35 HOH HOH . F 3 HOH B 149 574 39 HOH HOH . F 3 HOH B 150 575 42 HOH HOH . F 3 HOH B 151 576 43 HOH HOH . F 3 HOH B 152 577 44 HOH HOH . F 3 HOH B 153 578 45 HOH HOH . F 3 HOH B 154 579 46 HOH HOH . F 3 HOH B 155 580 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ONL . . . C 2 16.473 14.553 4.678 1 41.43 ? N ONL 401 A 1 HETATM 2 C CA ONL . . . C 2 17.92 14.302 4.691 1 41.12 ? CA ONL 401 A 1 HETATM 3 C C ONL . . . C 2 18.224 13.094 5.562 1 41.28 ? C ONL 401 A 1 HETATM 4 O O ONL . . . C 2 17.828 13.07 6.744 1 41.22 ? O ONL 401 A 1 HETATM 5 O OXT ONL . . . C 2 18.849 12.119 5.074 1 41.49 ? OXT ONL 401 A 1 HETATM 6 C CB ONL . . . C 2 18.709 15.532 5.121 1 40.68 ? CB ONL 401 A 1 HETATM 7 C CG ONL . . . C 2 20.04 15.533 4.357 1 40.84 ? CG ONL 401 A 1 HETATM 8 C CD ONL . . . C 2 20.678 16.897 4.303 1 39.74 ? CD ONL 401 A 1 HETATM 9 O OD ONL . . . C 2 20.445 17.709 3.436 1 40.7 ? OD ONL 401 A 1 HETATM 10 C CE ONL . . . C 2 21.547 17.224 5.215 1 37.45 ? CE ONL 401 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #