data_3BT1 # _model_server_result.job_id dlB5OzRjfiHusflp8R9Mew _model_server_result.datetime_utc '2024-12-05 04:59:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bt1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1172}' # _entry.id 3BT1 # _exptl.entry_id 3BT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BT1 _cell.length_a 97.353 _cell.length_b 105.187 _cell.length_c 55.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG U 1200 NAG 4 n D NAG 2 C 2 NAG U 1201 NAG 4 n D MAN 3 C 3 MAN U 1202 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 11 1_555 A SG CYS 21 A CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf2 A SG CYS 15 A CYS 13 1_555 A SG CYS 33 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 35 A CYS 33 1_555 A SG CYS 44 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 52 A CYS 50 1_555 A SG CYS 133 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 73 A CYS 71 1_555 A SG CYS 115 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 104 A CYS 102 1_555 A SG CYS 128 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 B SG CYS 4 B CYS 5 1_555 B SG CYS 20 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 8 B CYS 9 1_555 B SG CYS 38 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf9 B SG CYS 18 B CYS 19 1_555 B SG CYS 31 B CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf10 B SG CYS 24 B CYS 25 1_555 B SG CYS 30 B CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf11 C SG CYS 5 U CYS 3 1_555 C SG CYS 26 U CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf12 C SG CYS 8 U CYS 6 1_555 C SG CYS 14 U CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf13 C SG CYS 19 U CYS 17 1_555 C SG CYS 47 U CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf14 C SG CYS 73 U CYS 71 1_555 C SG CYS 78 U CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf15 C SG CYS 97 U CYS 95 1_555 C SG CYS 124 U CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? disulf ? disulf16 C SG CYS 100 U CYS 98 1_555 C SG CYS 107 U CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf17 C SG CYS 117 U CYS 115 1_555 C SG CYS 149 U CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf18 C SG CYS 155 U CYS 153 1_555 C SG CYS 172 U CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf19 C SG CYS 173 U CYS 171 1_555 C SG CYS 178 U CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf20 C SG CYS 196 U CYS 194 1_555 C SG CYS 224 U CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? disulf ? disulf21 C SG CYS 199 U CYS 197 1_555 C SG CYS 207 U CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf22 C SG CYS 217 U CYS 215 1_555 C SG CYS 243 U CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf23 C SG CYS 249 U CYS 247 1_555 C SG CYS 267 U CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf24 C SG CYS 268 U CYS 266 1_555 C SG CYS 273 U CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 C ND2 ASN 54 U ASN 52 1_555 E C1 NAG . U NAG 1052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.552 ? covale ? covale2 C ND2 ASN 174 U ASN 172 1_555 F C1 NAG . U NAG 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 C ND2 ASN 202 U ASN 200 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale4 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale5 D O4 NAG . C NAG 2 1_555 D C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3BT1 _atom_sites.fract_transf_matrix[1][1] 0.010272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG U 1 1052 1052 NAG NAG . F 5 NAG U 1 1172 1172 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 5 12.39 -10.981 -0.695 1 93.46 ? C1 NAG 1172 U 1 HETATM 2 C C2 NAG . . . F 5 11.361 -9.974 -0.126 1 97.41 ? C2 NAG 1172 U 1 HETATM 3 C C3 NAG . . . F 5 11.567 -8.543 -0.684 1 99.23 ? C3 NAG 1172 U 1 HETATM 4 C C4 NAG . . . F 5 12.979 -8.088 -0.329 1 99.84 ? C4 NAG 1172 U 1 HETATM 5 C C5 NAG . . . F 5 13.97 -9.12 -0.916 1 99.82 ? C5 NAG 1172 U 1 HETATM 6 C C6 NAG . . . F 5 14.994 -9.582 0.131 1 100.06 ? C6 NAG 1172 U 1 HETATM 7 C C7 NAG . . . F 5 9.072 -10.507 0.628 1 97.11 ? C7 NAG 1172 U 1 HETATM 8 C C8 NAG . . . F 5 8.419 -9.21 1.003 1 96.57 ? C8 NAG 1172 U 1 HETATM 9 N N2 NAG . . . F 5 9.99 -10.446 -0.346 1 97.24 ? N2 NAG 1172 U 1 HETATM 10 O O3 NAG . . . F 5 10.639 -7.587 -0.192 1 100.83 ? O3 NAG 1172 U 1 HETATM 11 O O4 NAG . . . F 5 13.231 -6.738 -0.728 1 99.15 ? O4 NAG 1172 U 1 HETATM 12 O O5 NAG . . . F 5 13.339 -10.277 -1.49 1 97.53 ? O5 NAG 1172 U 1 HETATM 13 O O6 NAG . . . F 5 15.649 -8.461 0.679 1 99.53 ? O6 NAG 1172 U 1 HETATM 14 O O7 NAG . . . F 5 8.74 -11.55 1.203 1 96.36 ? O7 NAG 1172 U 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #