data_3BT9
#
_model_server_result.job_id            pSbZsiTf8gtEg3u1HOEleQ 
_model_server_result.datetime_utc      '2024-11-29 04:10:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bt9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":201}' 
#
_entry.id    3BT9 
#
_exptl.entry_id    3BT9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.665 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DEQUALINIUM 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BT9 
_cell.length_a            171.24 
_cell.length_b            171.24 
_cell.length_c            94.2 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA hexadecameric 16 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,K,L,M,N,O,P,Q,R,S,T,Z,BA 1 1 
B,D,F,G,H,I,J,U,V,W,X,Y,AA,CA 2 1 
A,C,E,K,L,M,N,O,P,Q,R,S,T,Z,BA 3 1,2,3,4 
B,D,F,G,H,I,J,U,V,W,X,Y,AA,CA 3 5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -171.24 -171.24 0 
3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -171.24 -171.24 0 
5 'crystal symmetry operation' 3_444 -y-1/2,x-1/2,z-1/2 0 -1 0 1 0 0 0 0 1 -85.62 -85.62 -47.1 
6 'crystal symmetry operation' 4_444 y-1/2,-x-1/2,z-1/2 0 1 0 -1 0 0 0 0 1 -85.62 -85.62 -47.1 
7 'crystal symmetry operation' 5_445 -x-1/2,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 -85.62 -85.62 47.1 
8 'crystal symmetry operation' 6_445 x-1/2,-y-1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 -85.62 -85.62 47.1 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             T 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H40 N4 2' 
_chem_comp.formula_weight    456.665 
_chem_comp.id                DEQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DEQUALINIUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DEQUADIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DEQ doub 83 n y 
C1 C5 DEQ sing 84 n y 
C1 H11 DEQ sing 85 n n 
C2 C3 DEQ sing 86 n y 
C2 H21 DEQ sing 87 n n 
C3 C4 DEQ doub 88 n y 
C3 H31 DEQ sing 89 n n 
C4 C6 DEQ sing 90 n y 
C4 H41 DEQ sing 91 n n 
C5 C6 DEQ doub 92 n y 
C5 N1 DEQ sing 93 n y 
C6 C7 DEQ sing 94 n y 
C7 C8 DEQ doub 95 n y 
C7 N4 DEQ sing 96 n n 
C8 C9 DEQ sing 97 n y 
C8 H81 DEQ sing 98 n n 
C9 N1 DEQ doub 99 n y 
C9 C30 DEQ sing 100 n n 
N1 C28 DEQ sing 101 n n 
C10 C11 DEQ doub 102 n y 
C10 C14 DEQ sing 103 n y 
C10 C15 DEQ sing 104 n y 
C11 N2 DEQ sing 105 n y 
C11 C18 DEQ sing 106 n y 
N2 C12 DEQ doub 107 n y 
N2 C19 DEQ sing 108 n n 
C12 C13 DEQ sing 109 n y 
C12 C29 DEQ sing 110 n n 
C13 C14 DEQ doub 111 n y 
C13 H131 DEQ sing 112 n n 
C14 N3 DEQ sing 113 n n 
C15 C16 DEQ doub 114 n y 
C15 H151 DEQ sing 115 n n 
C16 C17 DEQ sing 116 n y 
C16 H161 DEQ sing 117 n n 
C17 C18 DEQ doub 118 n y 
C17 H171 DEQ sing 119 n n 
C18 H181 DEQ sing 120 n n 
C19 C20 DEQ sing 121 n n 
C19 H191 DEQ sing 122 n n 
C19 H192 DEQ sing 123 n n 
C20 C21 DEQ sing 124 n n 
C20 H201 DEQ sing 125 n n 
C20 H202 DEQ sing 126 n n 
C21 C22 DEQ sing 127 n n 
C21 H211 DEQ sing 128 n n 
C21 H212 DEQ sing 129 n n 
C22 C23 DEQ sing 130 n n 
C22 H221 DEQ sing 131 n n 
C22 H222 DEQ sing 132 n n 
C23 C24 DEQ sing 133 n n 
C23 H231 DEQ sing 134 n n 
C23 H232 DEQ sing 135 n n 
C24 C25 DEQ sing 136 n n 
C24 H241 DEQ sing 137 n n 
C24 H242 DEQ sing 138 n n 
C25 C26 DEQ sing 139 n n 
C25 H251 DEQ sing 140 n n 
C25 H252 DEQ sing 141 n n 
C26 C27 DEQ sing 142 n n 
C26 H261 DEQ sing 143 n n 
C26 H262 DEQ sing 144 n n 
C27 C28 DEQ sing 145 n n 
C27 H271 DEQ sing 146 n n 
C27 H272 DEQ sing 147 n n 
C28 H281 DEQ sing 148 n n 
C28 H282 DEQ sing 149 n n 
C30 H301 DEQ sing 150 n n 
C30 H302 DEQ sing 151 n n 
C30 H303 DEQ sing 152 n n 
C29 H291 DEQ sing 153 n n 
C29 H292 DEQ sing 154 n n 
C29 H293 DEQ sing 155 n n 
N4 HN41 DEQ sing 156 n n 
N4 HN42 DEQ sing 157 n n 
N3 HN31 DEQ sing 158 n n 
N3 HN32 DEQ sing 159 n n 
#
_atom_sites.entry_id                     3BT9 
_atom_sites.fract_transf_matrix[1][1]    0.00584 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00584 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010616 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 B 1 499 499 SO4 SO4 . 
F 2 SO4 D 1 899 899 SO4 SO4 . 
G 2 SO4 D 1 269 269 SO4 SO4 . 
H 2 SO4 D 1 270 270 SO4 SO4 . 
I 2 SO4 D 1 999 999 SO4 SO4 . 
J 2 SO4 D 1 280 280 SO4 SO4 . 
K 2 SO4 A 1 599 599 SO4 SO4 . 
L 2 SO4 A 1 299 299 SO4 SO4 . 
M 2 SO4 A 1 699 699 SO4 SO4 . 
N 2 SO4 A 1 800 800 SO4 SO4 . 
O 2 SO4 A 1 801 801 SO4 SO4 . 
P 2 SO4 A 1 279 279 SO4 SO4 . 
Q 2 SO4 A 1 601 601 SO4 SO4 . 
R 2 SO4 A 1 602 602 SO4 SO4 . 
S 2 SO4 A 1 810 810 SO4 SO4 . 
T 3 DEQ A 1 201 201 DEQ DEQ . 
U 2 SO4 E 1 900 900 SO4 SO4 . 
V 2 SO4 E 1 249 249 SO4 SO4 . 
W 2 SO4 E 1 399 399 SO4 SO4 . 
X 2 SO4 E 1 799 799 SO4 SO4 . 
Y 2 SO4 E 1 239 239 SO4 SO4 . 
Z 4 HOH B 1 500 2 HOH TIP . 
Z 4 HOH B 2 501 10 HOH TIP . 
AA 4 HOH D 1 1000 11 HOH TIP . 
BA 4 HOH A 1 811 3 HOH TIP . 
BA 4 HOH A 2 812 4 HOH TIP . 
BA 4 HOH A 3 813 6 HOH TIP . 
BA 4 HOH A 4 814 7 HOH TIP . 
BA 4 HOH A 5 815 8 HOH TIP . 
BA 4 HOH A 6 816 9 HOH TIP . 
BA 4 HOH A 7 817 13 HOH TIP . 
BA 4 HOH A 8 818 14 HOH TIP . 
CA 4 HOH E 1 901 12 HOH TIP . 
CA 4 HOH E 2 902 15 HOH TIP . 
CA 4 HOH E 3 903 16 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DEQ . . . T 3 -71.479 -49.746 7.173 1 94.27 ? C1 DEQ 201 A 1 
HETATM 2 C C2 DEQ . . . T 3 -71.578 -51.021 6.523 1 93.91 ? C2 DEQ 201 A 1 
HETATM 3 C C3 DEQ . . . T 3 -72.747 -51.823 6.706 1 94.06 ? C3 DEQ 201 A 1 
HETATM 4 C C4 DEQ . . . T 3 -73.815 -51.351 7.534 1 94.76 ? C4 DEQ 201 A 1 
HETATM 5 C C5 DEQ . . . T 3 -72.533 -49.201 8.032 1 95.49 ? C5 DEQ 201 A 1 
HETATM 6 C C6 DEQ . . . T 3 -73.742 -50.057 8.205 1 95.8 ? C6 DEQ 201 A 1 
HETATM 7 C C7 DEQ . . . T 3 -74.834 -49.605 9.035 1 95.96 ? C7 DEQ 201 A 1 
HETATM 8 C C8 DEQ . . . T 3 -74.774 -48.345 9.693 1 96.31 ? C8 DEQ 201 A 1 
HETATM 9 C C9 DEQ . . . T 3 -73.695 -47.442 9.616 1 96.3 ? C9 DEQ 201 A 1 
HETATM 10 N N1 DEQ . . . T 3 -72.506 -47.806 8.789 1 96.57 ? N1 DEQ 201 A 1 
HETATM 11 C C10 DEQ . . . T 3 -62.447 -45.357 0.726 1 108.7 ? C10 DEQ 201 A 1 
HETATM 12 C C11 DEQ . . . T 3 -62.687 -45.019 2.164 1 108.41 ? C11 DEQ 201 A 1 
HETATM 13 N N2 DEQ . . . T 3 -61.438 -45.051 3.199 1 108.78 ? N2 DEQ 201 A 1 
HETATM 14 C C12 DEQ . . . T 3 -60.107 -45.448 2.465 1 109.62 ? C12 DEQ 201 A 1 
HETATM 15 C C13 DEQ . . . T 3 -60.037 -45.742 1.099 1 110.59 ? C13 DEQ 201 A 1 
HETATM 16 C C14 DEQ . . . T 3 -61.129 -45.718 0.239 1 110.02 ? C14 DEQ 201 A 1 
HETATM 17 C C15 DEQ . . . T 3 -63.553 -45.334 -0.202 1 107.67 ? C15 DEQ 201 A 1 
HETATM 18 C C16 DEQ . . . T 3 -64.883 -44.986 0.191 1 108.38 ? C16 DEQ 201 A 1 
HETATM 19 C C17 DEQ . . . T 3 -65.147 -44.651 1.548 1 108.25 ? C17 DEQ 201 A 1 
HETATM 20 C C18 DEQ . . . T 3 -64.08 -44.668 2.496 1 107.83 ? C18 DEQ 201 A 1 
HETATM 21 C C19 DEQ . . . T 3 -61.278 -45.08 4.805 1 109.36 ? C19 DEQ 201 A 1 
HETATM 22 C C20 DEQ . . . T 3 -62.707 -45.166 5.291 1 107.94 ? C20 DEQ 201 A 1 
HETATM 23 C C21 DEQ . . . T 3 -62.899 -45.199 6.806 1 107.48 ? C21 DEQ 201 A 1 
HETATM 24 C C22 DEQ . . . T 3 -64.38 -45.341 6.899 1 108.98 ? C22 DEQ 201 A 1 
HETATM 25 C C23 DEQ . . . T 3 -65.068 -45.384 8.244 1 108.38 ? C23 DEQ 201 A 1 
HETATM 26 C C24 DEQ . . . T 3 -66.533 -45.566 7.807 1 109.26 ? C24 DEQ 201 A 1 
HETATM 27 C C25 DEQ . . . T 3 -67.573 -45.616 8.893 1 108.62 ? C25 DEQ 201 A 1 
HETATM 28 C C26 DEQ . . . T 3 -68.972 -45.858 8.281 1 107.57 ? C26 DEQ 201 A 1 
HETATM 29 C C27 DEQ . . . T 3 -70.025 -46.952 7.996 1 104.18 ? C27 DEQ 201 A 1 
HETATM 30 C C28 DEQ . . . T 3 -71.344 -46.746 8.789 1 100.2 ? C28 DEQ 201 A 1 
HETATM 31 C C30 DEQ . . . T 3 -73.89 -46.144 10.435 1 96.13 ? C30 DEQ 201 A 1 
HETATM 32 C C29 DEQ . . . T 3 -58.753 -45.552 3.175 1 109.14 ? C29 DEQ 201 A 1 
HETATM 33 N N4 DEQ . . . T 3 -76.041 -50.355 9.268 1 96.03 ? N4 DEQ 201 A 1 
HETATM 34 N N3 DEQ . . . T 3 -60.698 -46.077 -1.102 1 110.48 ? N3 DEQ 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           34 
#