data_3BTI
#
_model_server_result.job_id            oY_YPkUN4KGVh8NMR5hSgg 
_model_server_result.datetime_utc      '2024-11-24 08:16:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bti 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":802}' 
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_entry.id    3BTI 
#
_exptl.entry_id    3BTI 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              336.361 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BERBERINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BTI 
_cell.length_a            171.48 
_cell.length_b            171.48 
_cell.length_c            94.4 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BTI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA hexadecameric 16 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,L,M,N,O,P,Q,W,X 1 1 
B,D,G,H,I,J,K,R,S,T,U,V 2 1 
B,D,G,H,I,J,K,R,S,T,U,V 3 1,2,3,4 
A,C,E,F,L,M,N,O,P,Q,W,X 3 5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 94.4 
4 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 94.4 
5 'crystal symmetry operation' 3_455 -y-1/2,x+1/2,z+1/2 0 -1 0 1 0 0 0 0 1 -85.74 85.74 47.2 
6 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z+1/2 0 1 0 -1 0 0 0 0 1 85.74 -85.74 47.2 
7 'crystal symmetry operation' 5_455 -x-1/2,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 -85.74 85.74 47.2 
8 'crystal symmetry operation' 6_545 x+1/2,-y-1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 85.74 -85.74 47.2 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             Q 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H18 N O4 1' 
_chem_comp.formula_weight    336.361 
_chem_comp.id                BER 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BERBERINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BER sing 70 n y 
C1 N1 BER doub 71 n y 
C1 C3 BER sing 72 n y 
C2 C4 BER doub 73 n y 
C2 C5 BER sing 74 n y 
N1 C6 BER sing 75 n y 
N1 C7 BER sing 76 n n 
C3 C8 BER doub 77 n y 
C3 H31 BER sing 78 n n 
C4 C9 BER sing 79 n y 
C4 C10 BER sing 80 n n 
C5 C11 BER doub 81 n y 
C5 H51 BER sing 82 n n 
C6 C12 BER doub 83 n y 
C6 H61 BER sing 84 n n 
C7 C10 BER sing 85 n n 
C7 H71 BER sing 86 n n 
C7 H72 BER sing 87 n n 
C8 C12 BER sing 88 n y 
C8 C13 BER sing 89 n y 
C9 C14 BER doub 90 n y 
C9 H91 BER sing 91 n n 
C10 H101 BER sing 92 n n 
C10 H102 BER sing 93 n n 
C11 C14 BER sing 94 n y 
C11 O1 BER sing 95 n n 
C12 C15 BER sing 96 n y 
C13 C16 BER doub 97 n y 
C13 H131 BER sing 98 n n 
C14 O2 BER sing 99 n n 
O1 C17 BER sing 100 n n 
C15 C18 BER doub 101 n y 
C15 O3 BER sing 102 n n 
C16 C18 BER sing 103 n y 
C16 H161 BER sing 104 n n 
O2 C17 BER sing 105 n n 
C17 H171 BER sing 106 n n 
C17 H172 BER sing 107 n n 
C18 O4 BER sing 108 n n 
O3 C19 BER sing 109 n n 
O4 C20 BER sing 110 n n 
C19 H191 BER sing 111 n n 
C19 H192 BER sing 112 n n 
C19 H193 BER sing 113 n n 
C20 H201 BER sing 114 n n 
C20 H202 BER sing 115 n n 
C20 H203 BER sing 116 n n 
#
_atom_sites.entry_id                     3BTI 
_atom_sites.fract_transf_matrix[1][1]    0.005832 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010593 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 B 1 600 600 SO4 SO4 . 
F 2 SO4 B 1 1000 1000 SO4 SO4 . 
G 2 SO4 D 1 899 899 SO4 SO4 . 
H 2 SO4 D 1 999 999 SO4 SO4 . 
I 2 SO4 D 1 280 280 SO4 SO4 . 
J 2 SO4 D 1 779 779 SO4 SO4 . 
K 2 SO4 D 1 400 400 SO4 SO4 . 
L 2 SO4 A 1 599 599 SO4 SO4 . 
M 2 SO4 A 1 299 299 SO4 SO4 . 
N 2 SO4 A 1 699 699 SO4 SO4 . 
O 2 SO4 A 1 801 801 SO4 SO4 . 
P 2 SO4 A 1 279 279 SO4 SO4 . 
Q 3 BER A 1 802 101 BER BER . 
R 2 SO4 E 1 900 900 SO4 SO4 . 
S 2 SO4 E 1 249 249 SO4 SO4 . 
T 2 SO4 E 1 399 399 SO4 SO4 . 
U 2 SO4 E 1 799 799 SO4 SO4 . 
V 2 SO4 E 1 239 239 SO4 SO4 . 
W 4 HOH B 1 1001 3 HOH HOH . 
W 4 HOH B 2 1002 4 HOH HOH . 
X 4 HOH A 1 803 1 HOH HOH . 
X 4 HOH A 2 804 2 HOH HOH . 
X 4 HOH A 3 805 5 HOH HOH . 
X 4 HOH A 4 806 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BER . . . Q 3 -64.736 -44.621 2.697 1 112.74 ? C1 BER 802 A 1 
HETATM 2 C C2 BER . . . Q 3 -66.149 -44.264 3.158 1 113.01 ? C2 BER 802 A 1 
HETATM 3 N N1 BER . . . Q 3 -64.43 -44.54 1.297 1 112.94 ? N1 BER 802 A 1 
HETATM 4 C C3 BER . . . Q 3 -63.7 -44.994 3.614 1 111.35 ? C3 BER 802 A 1 
HETATM 5 C C4 BER . . . Q 3 -66.976 -43.472 2.251 1 113.39 ? C4 BER 802 A 1 
HETATM 6 C C5 BER . . . Q 3 -66.683 -44.659 4.423 1 113.2 ? C5 BER 802 A 1 
HETATM 7 C C6 BER . . . Q 3 -63.148 -44.838 0.819 1 111.57 ? C6 BER 802 A 1 
HETATM 8 C C7 BER . . . Q 3 -65.49 -44.146 0.331 1 112.78 ? C7 BER 802 A 1 
HETATM 9 C C8 BER . . . Q 3 -62.393 -45.299 3.116 1 110.18 ? C8 BER 802 A 1 
HETATM 10 C C9 BER . . . Q 3 -68.291 -43.093 2.627 1 114.26 ? C9 BER 802 A 1 
HETATM 11 C C10 BER . . . Q 3 -66.414 -43.045 0.894 1 113.26 ? C10 BER 802 A 1 
HETATM 12 C C11 BER . . . Q 3 -68.021 -44.265 4.786 1 113.61 ? C11 BER 802 A 1 
HETATM 13 C C12 BER . . . Q 3 -62.106 -45.184 1.706 1 110.12 ? C12 BER 802 A 1 
HETATM 14 C C13 BER . . . Q 3 -61.349 -45.645 4.013 1 109.6 ? C13 BER 802 A 1 
HETATM 15 C C14 BER . . . Q 3 -68.816 -43.486 3.891 1 114.38 ? C14 BER 802 A 1 
HETATM 16 O O1 BER . . . Q 3 -68.763 -44.498 5.906 1 113.62 ? O1 BER 802 A 1 
HETATM 17 C C15 BER . . . Q 3 -60.794 -45.497 1.178 1 109.28 ? C15 BER 802 A 1 
HETATM 18 C C16 BER . . . Q 3 -60.044 -45.929 3.522 1 109.16 ? C16 BER 802 A 1 
HETATM 19 O O2 BER . . . Q 3 -70.019 -43.256 4.479 1 114.78 ? O2 BER 802 A 1 
HETATM 20 C C17 BER . . . Q 3 -69.843 -43.551 5.869 1 114.49 ? C17 BER 802 A 1 
HETATM 21 C C18 BER . . . Q 3 -59.736 -45.83 2.109 1 109.17 ? C18 BER 802 A 1 
HETATM 22 O O3 BER . . . Q 3 -60.588 -45.37 -0.211 1 108.35 ? O3 BER 802 A 1 
HETATM 23 O O4 BER . . . Q 3 -58.458 -46.102 1.635 1 109.18 ? O4 BER 802 A 1 
HETATM 24 C C19 BER . . . Q 3 -59.322 -45.608 -0.88 1 106.34 ? C19 BER 802 A 1 
HETATM 25 C C20 BER . . . Q 3 -57.367 -46.46 2.511 1 110.23 ? C20 BER 802 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#