data_3BTI # _model_server_result.job_id 7QO964_tS6_DUI2HnSf-mg _model_server_result.datetime_utc '2024-10-15 02:17:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":802}' # _entry.id 3BTI # _exptl.entry_id 3BTI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.361 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BERBERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BTI _cell.length_a 171.48 _cell.length_b 171.48 _cell.length_c 94.4 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA hexadecameric 16 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,L,M,N,O,P,Q,W,X 1 1 B,D,G,H,I,J,K,R,S,T,U,V 2 1 B,D,G,H,I,J,K,R,S,T,U,V 3 1,2,3,4 A,C,E,F,L,M,N,O,P,Q,W,X 3 5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 94.4 4 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 94.4 5 'crystal symmetry operation' 3_455 -y-1/2,x+1/2,z+1/2 0 -1 0 1 0 0 0 0 1 -85.74 85.74 47.2 6 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z+1/2 0 1 0 -1 0 0 0 0 1 85.74 -85.74 47.2 7 'crystal symmetry operation' 5_455 -x-1/2,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 -85.74 85.74 47.2 8 'crystal symmetry operation' 6_545 x+1/2,-y-1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 85.74 -85.74 47.2 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H18 N O4 1' _chem_comp.formula_weight 336.361 _chem_comp.id BER _chem_comp.mon_nstd_flag . _chem_comp.name BERBERINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BER sing 70 n y C1 N1 BER doub 71 n y C1 C3 BER sing 72 n y C2 C4 BER doub 73 n y C2 C5 BER sing 74 n y N1 C6 BER sing 75 n y N1 C7 BER sing 76 n n C3 C8 BER doub 77 n y C3 H31 BER sing 78 n n C4 C9 BER sing 79 n y C4 C10 BER sing 80 n n C5 C11 BER doub 81 n y C5 H51 BER sing 82 n n C6 C12 BER doub 83 n y C6 H61 BER sing 84 n n C7 C10 BER sing 85 n n C7 H71 BER sing 86 n n C7 H72 BER sing 87 n n C8 C12 BER sing 88 n y C8 C13 BER sing 89 n y C9 C14 BER doub 90 n y C9 H91 BER sing 91 n n C10 H101 BER sing 92 n n C10 H102 BER sing 93 n n C11 C14 BER sing 94 n y C11 O1 BER sing 95 n n C12 C15 BER sing 96 n y C13 C16 BER doub 97 n y C13 H131 BER sing 98 n n C14 O2 BER sing 99 n n O1 C17 BER sing 100 n n C15 C18 BER doub 101 n y C15 O3 BER sing 102 n n C16 C18 BER sing 103 n y C16 H161 BER sing 104 n n O2 C17 BER sing 105 n n C17 H171 BER sing 106 n n C17 H172 BER sing 107 n n C18 O4 BER sing 108 n n O3 C19 BER sing 109 n n O4 C20 BER sing 110 n n C19 H191 BER sing 111 n n C19 H192 BER sing 112 n n C19 H193 BER sing 113 n n C20 H201 BER sing 114 n n C20 H202 BER sing 115 n n C20 H203 BER sing 116 n n # _atom_sites.entry_id 3BTI _atom_sites.fract_transf_matrix[1][1] 0.005832 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 B 1 600 600 SO4 SO4 . F 2 SO4 B 1 1000 1000 SO4 SO4 . G 2 SO4 D 1 899 899 SO4 SO4 . H 2 SO4 D 1 999 999 SO4 SO4 . I 2 SO4 D 1 280 280 SO4 SO4 . J 2 SO4 D 1 779 779 SO4 SO4 . K 2 SO4 D 1 400 400 SO4 SO4 . L 2 SO4 A 1 599 599 SO4 SO4 . M 2 SO4 A 1 299 299 SO4 SO4 . N 2 SO4 A 1 699 699 SO4 SO4 . O 2 SO4 A 1 801 801 SO4 SO4 . P 2 SO4 A 1 279 279 SO4 SO4 . Q 3 BER A 1 802 101 BER BER . R 2 SO4 E 1 900 900 SO4 SO4 . S 2 SO4 E 1 249 249 SO4 SO4 . T 2 SO4 E 1 399 399 SO4 SO4 . U 2 SO4 E 1 799 799 SO4 SO4 . V 2 SO4 E 1 239 239 SO4 SO4 . W 4 HOH B 1 1001 3 HOH HOH . W 4 HOH B 2 1002 4 HOH HOH . X 4 HOH A 1 803 1 HOH HOH . X 4 HOH A 2 804 2 HOH HOH . X 4 HOH A 3 805 5 HOH HOH . X 4 HOH A 4 806 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BER . . . Q 3 -64.736 -44.621 2.697 1 112.74 ? C1 BER 802 A 1 HETATM 2 C C2 BER . . . Q 3 -66.149 -44.264 3.158 1 113.01 ? C2 BER 802 A 1 HETATM 3 N N1 BER . . . Q 3 -64.43 -44.54 1.297 1 112.94 ? N1 BER 802 A 1 HETATM 4 C C3 BER . . . Q 3 -63.7 -44.994 3.614 1 111.35 ? C3 BER 802 A 1 HETATM 5 C C4 BER . . . Q 3 -66.976 -43.472 2.251 1 113.39 ? C4 BER 802 A 1 HETATM 6 C C5 BER . . . Q 3 -66.683 -44.659 4.423 1 113.2 ? C5 BER 802 A 1 HETATM 7 C C6 BER . . . Q 3 -63.148 -44.838 0.819 1 111.57 ? C6 BER 802 A 1 HETATM 8 C C7 BER . . . Q 3 -65.49 -44.146 0.331 1 112.78 ? C7 BER 802 A 1 HETATM 9 C C8 BER . . . Q 3 -62.393 -45.299 3.116 1 110.18 ? C8 BER 802 A 1 HETATM 10 C C9 BER . . . Q 3 -68.291 -43.093 2.627 1 114.26 ? C9 BER 802 A 1 HETATM 11 C C10 BER . . . Q 3 -66.414 -43.045 0.894 1 113.26 ? C10 BER 802 A 1 HETATM 12 C C11 BER . . . Q 3 -68.021 -44.265 4.786 1 113.61 ? C11 BER 802 A 1 HETATM 13 C C12 BER . . . Q 3 -62.106 -45.184 1.706 1 110.12 ? C12 BER 802 A 1 HETATM 14 C C13 BER . . . Q 3 -61.349 -45.645 4.013 1 109.6 ? C13 BER 802 A 1 HETATM 15 C C14 BER . . . Q 3 -68.816 -43.486 3.891 1 114.38 ? C14 BER 802 A 1 HETATM 16 O O1 BER . . . Q 3 -68.763 -44.498 5.906 1 113.62 ? O1 BER 802 A 1 HETATM 17 C C15 BER . . . Q 3 -60.794 -45.497 1.178 1 109.28 ? C15 BER 802 A 1 HETATM 18 C C16 BER . . . Q 3 -60.044 -45.929 3.522 1 109.16 ? C16 BER 802 A 1 HETATM 19 O O2 BER . . . Q 3 -70.019 -43.256 4.479 1 114.78 ? O2 BER 802 A 1 HETATM 20 C C17 BER . . . Q 3 -69.843 -43.551 5.869 1 114.49 ? C17 BER 802 A 1 HETATM 21 C C18 BER . . . Q 3 -59.736 -45.83 2.109 1 109.17 ? C18 BER 802 A 1 HETATM 22 O O3 BER . . . Q 3 -60.588 -45.37 -0.211 1 108.35 ? O3 BER 802 A 1 HETATM 23 O O4 BER . . . Q 3 -58.458 -46.102 1.635 1 109.18 ? O4 BER 802 A 1 HETATM 24 C C19 BER . . . Q 3 -59.322 -45.608 -0.88 1 106.34 ? C19 BER 802 A 1 HETATM 25 C C20 BER . . . Q 3 -57.367 -46.46 2.511 1 110.23 ? C20 BER 802 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #