data_3BTX # _model_server_result.job_id kGcP4ywdJWa0kvmuCtmaDQ _model_server_result.datetime_utc '2024-11-24 15:01:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3btx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3BTX # _exptl.entry_id 3BTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BTX _cell.length_a 78.14 _cell.length_b 78.14 _cell.length_c 229.59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 121 A CYS 175 1_555 B S 2YR 7 B 2YR 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale2 B O3' DT 6 B DT 264 1_555 B P 2YR 7 B 2YR 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale3 B O3' 2YR 7 B 2YR 265 1_555 B P DA 8 B DA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? metalc ? metalc1 A OD1 ASP 119 A ASP 173 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc2 A OD2 ASP 119 A ASP 173 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc3 D MG MG . A MG 301 1_555 E O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 D MG MG . A MG 301 1_555 E O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? hydrog WATSON-CRICK hydrog1 B N1 DG 3 B DG 261 1_555 C N3 DC 12 C DC 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 3 B DG 261 1_555 C O2 DC 12 C DC 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 3 B DG 261 1_555 C N4 DC 12 C DC 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 4 B DT 262 1_555 C N1 DA 11 C DA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 4 B DT 262 1_555 C N6 DA 11 C DA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DA 5 B DA 263 1_555 C N3 DT 10 C DT 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 DA 5 B DA 263 1_555 C O4 DT 10 C DT 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DT 6 B DT 264 1_555 C N1 DA 9 C DA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 DT 6 B DT 264 1_555 C N6 DA 9 C DA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DA 8 B DA 266 1_555 C N3 DT 7 C DT 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N6 DA 8 B DA 266 1_555 C O4 DT 7 C DT 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DA MISPAIR' hydrog12 B N3 DA 8 B DA 266 1_555 C N6 DA 8 C DA 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DT 9 B DT 267 1_555 C N1 DA 6 C DA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O4 DT 9 B DT 267 1_555 C N6 DA 6 C DA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DT 10 B DT 268 1_555 C N1 DA 5 C DA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O4 DT 10 B DT 268 1_555 C N6 DA 5 C DA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 DG 11 B DG 269 1_555 C N3 DC 4 C DC 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 DG 11 B DG 269 1_555 C O2 DC 4 C DC 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 DG 11 B DG 269 1_555 C N4 DC 4 C DC 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N3 DC 12 B DC 270 1_555 C N1 DG 3 C DG 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N4 DC 12 B DC 270 1_555 C O6 DG 3 C DG 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O2 DC 12 B DC 270 1_555 C N2 DG 3 C DG 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N1 DG 13 B DG 271 1_555 C N3 DC 2 C DC 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N2 DG 13 B DG 271 1_555 C O2 DC 2 C DC 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O6 DG 13 B DG 271 1_555 C N4 DC 2 C DC 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BTX _atom_sites.fract_transf_matrix[1][1] 0.012798 _atom_sites.fract_transf_matrix[1][2] 0.007389 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 301 1 MG MG . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 4 HOH HOH . E 5 HOH A 4 404 5 HOH HOH . E 5 HOH A 5 405 6 HOH HOH . E 5 HOH A 6 406 7 HOH HOH . E 5 HOH A 7 407 8 HOH HOH . E 5 HOH A 8 408 9 HOH HOH . E 5 HOH A 9 409 10 HOH HOH . E 5 HOH A 10 410 12 HOH HOH . E 5 HOH A 11 411 13 HOH HOH . E 5 HOH A 12 412 14 HOH HOH . E 5 HOH A 13 413 15 HOH HOH . E 5 HOH A 14 414 18 HOH HOH . E 5 HOH A 15 415 19 HOH HOH . E 5 HOH A 16 416 20 HOH HOH . E 5 HOH A 17 417 22 HOH HOH . E 5 HOH A 18 418 23 HOH HOH . E 5 HOH A 19 419 24 HOH HOH . E 5 HOH A 20 420 25 HOH HOH . E 5 HOH A 21 421 26 HOH HOH . E 5 HOH A 22 422 27 HOH HOH . E 5 HOH A 23 423 28 HOH HOH . E 5 HOH A 24 424 29 HOH HOH . E 5 HOH A 25 425 30 HOH HOH . E 5 HOH A 26 426 31 HOH HOH . E 5 HOH A 27 427 32 HOH HOH . E 5 HOH A 28 428 33 HOH HOH . E 5 HOH A 29 429 35 HOH HOH . E 5 HOH A 30 430 36 HOH HOH . E 5 HOH A 31 431 37 HOH HOH . E 5 HOH A 32 432 38 HOH HOH . E 5 HOH A 33 433 39 HOH HOH . E 5 HOH A 34 434 42 HOH HOH . E 5 HOH A 35 435 43 HOH HOH . E 5 HOH A 36 436 45 HOH HOH . E 5 HOH A 37 437 47 HOH HOH . E 5 HOH A 38 438 48 HOH HOH . E 5 HOH A 39 439 49 HOH HOH . E 5 HOH A 40 440 50 HOH HOH . E 5 HOH A 41 441 52 HOH HOH . E 5 HOH A 42 442 53 HOH HOH . E 5 HOH A 43 443 54 HOH HOH . E 5 HOH A 44 444 55 HOH HOH . E 5 HOH A 45 445 56 HOH HOH . E 5 HOH A 46 446 59 HOH HOH . E 5 HOH A 47 447 62 HOH HOH . E 5 HOH A 48 448 63 HOH HOH . E 5 HOH A 49 449 64 HOH HOH . E 5 HOH A 50 450 65 HOH HOH . E 5 HOH A 51 451 67 HOH HOH . E 5 HOH A 52 452 69 HOH HOH . E 5 HOH A 53 453 70 HOH HOH . E 5 HOH A 54 454 71 HOH HOH . E 5 HOH A 55 455 72 HOH HOH . E 5 HOH A 56 456 73 HOH HOH . E 5 HOH A 57 457 74 HOH HOH . E 5 HOH A 58 458 75 HOH HOH . E 5 HOH A 59 459 76 HOH HOH . E 5 HOH A 60 460 77 HOH HOH . E 5 HOH A 61 461 78 HOH HOH . E 5 HOH A 62 462 79 HOH HOH . E 5 HOH A 63 463 81 HOH HOH . E 5 HOH A 64 464 82 HOH HOH . E 5 HOH A 65 465 83 HOH HOH . E 5 HOH A 66 466 84 HOH HOH . E 5 HOH A 67 467 85 HOH HOH . E 5 HOH A 68 468 86 HOH HOH . E 5 HOH A 69 469 87 HOH HOH . E 5 HOH A 70 470 88 HOH HOH . E 5 HOH A 71 471 89 HOH HOH . E 5 HOH A 72 472 90 HOH HOH . E 5 HOH A 73 473 92 HOH HOH . E 5 HOH A 74 474 93 HOH HOH . E 5 HOH A 75 475 95 HOH HOH . E 5 HOH A 76 476 96 HOH HOH . E 5 HOH A 77 477 97 HOH HOH . E 5 HOH A 78 478 98 HOH HOH . E 5 HOH A 79 479 99 HOH HOH . E 5 HOH A 80 480 100 HOH HOH . E 5 HOH A 81 481 101 HOH HOH . E 5 HOH A 82 482 102 HOH HOH . E 5 HOH A 83 483 103 HOH HOH . E 5 HOH A 84 484 104 HOH HOH . E 5 HOH A 85 485 105 HOH HOH . E 5 HOH A 86 486 106 HOH HOH . E 5 HOH A 87 487 107 HOH HOH . E 5 HOH A 88 488 108 HOH HOH . E 5 HOH A 89 489 109 HOH HOH . E 5 HOH A 90 490 113 HOH HOH . E 5 HOH A 91 491 117 HOH HOH . E 5 HOH A 92 492 118 HOH HOH . E 5 HOH A 93 493 119 HOH HOH . E 5 HOH A 94 494 120 HOH HOH . E 5 HOH A 95 495 121 HOH HOH . E 5 HOH A 96 496 122 HOH HOH . E 5 HOH A 97 497 123 HOH HOH . E 5 HOH A 98 498 124 HOH HOH . E 5 HOH A 99 499 125 HOH HOH . E 5 HOH A 100 500 126 HOH HOH . E 5 HOH A 101 501 127 HOH HOH . E 5 HOH A 102 502 128 HOH HOH . E 5 HOH A 103 503 129 HOH HOH . E 5 HOH A 104 504 130 HOH HOH . E 5 HOH A 105 505 131 HOH HOH . E 5 HOH A 106 506 132 HOH HOH . E 5 HOH A 107 507 136 HOH HOH . E 5 HOH A 108 508 137 HOH HOH . E 5 HOH A 109 509 138 HOH HOH . E 5 HOH A 110 510 139 HOH HOH . E 5 HOH A 111 511 140 HOH HOH . E 5 HOH A 112 512 141 HOH HOH . E 5 HOH A 113 513 142 HOH HOH . E 5 HOH A 114 514 143 HOH HOH . E 5 HOH A 115 515 144 HOH HOH . E 5 HOH A 116 516 145 HOH HOH . E 5 HOH A 117 517 147 HOH HOH . E 5 HOH A 118 518 148 HOH HOH . E 5 HOH A 119 519 149 HOH HOH . E 5 HOH A 120 520 150 HOH HOH . E 5 HOH A 121 521 151 HOH HOH . E 5 HOH A 122 522 152 HOH HOH . E 5 HOH A 123 523 156 HOH HOH . E 5 HOH A 124 524 157 HOH HOH . E 5 HOH A 125 525 158 HOH HOH . E 5 HOH A 126 526 159 HOH HOH . E 5 HOH A 127 527 160 HOH HOH . E 5 HOH A 128 528 163 HOH HOH . E 5 HOH A 129 529 164 HOH HOH . E 5 HOH A 130 530 165 HOH HOH . E 5 HOH A 131 531 166 HOH HOH . E 5 HOH A 132 532 167 HOH HOH . E 5 HOH A 133 533 168 HOH HOH . E 5 HOH A 134 534 169 HOH HOH . E 5 HOH A 135 535 170 HOH HOH . E 5 HOH A 136 536 171 HOH HOH . E 5 HOH A 137 537 172 HOH HOH . E 5 HOH A 138 538 173 HOH HOH . E 5 HOH A 139 539 174 HOH HOH . E 5 HOH A 140 540 175 HOH HOH . E 5 HOH A 141 541 176 HOH HOH . E 5 HOH A 142 542 177 HOH HOH . E 5 HOH A 143 543 181 HOH HOH . E 5 HOH A 144 544 187 HOH HOH . E 5 HOH A 145 545 188 HOH HOH . E 5 HOH A 146 546 192 HOH HOH . F 5 HOH B 1 301 16 HOH HOH . F 5 HOH B 2 302 17 HOH HOH . F 5 HOH B 3 303 21 HOH HOH . F 5 HOH B 4 304 34 HOH HOH . F 5 HOH B 5 305 51 HOH HOH . F 5 HOH B 6 306 58 HOH HOH . F 5 HOH B 7 307 60 HOH HOH . F 5 HOH B 8 308 66 HOH HOH . F 5 HOH B 9 309 68 HOH HOH . F 5 HOH B 10 310 91 HOH HOH . F 5 HOH B 11 311 110 HOH HOH . F 5 HOH B 12 312 111 HOH HOH . F 5 HOH B 13 313 112 HOH HOH . F 5 HOH B 14 314 114 HOH HOH . F 5 HOH B 15 315 134 HOH HOH . F 5 HOH B 16 316 155 HOH HOH . F 5 HOH B 17 317 180 HOH HOH . F 5 HOH B 18 318 185 HOH HOH . F 5 HOH B 19 319 186 HOH HOH . F 5 HOH B 20 320 189 HOH HOH . F 5 HOH B 21 321 190 HOH HOH . F 5 HOH B 22 322 191 HOH HOH . G 5 HOH C 1 301 3 HOH HOH . G 5 HOH C 2 302 11 HOH HOH . G 5 HOH C 3 303 40 HOH HOH . G 5 HOH C 4 304 41 HOH HOH . G 5 HOH C 5 305 44 HOH HOH . G 5 HOH C 6 306 46 HOH HOH . G 5 HOH C 7 307 57 HOH HOH . G 5 HOH C 8 308 61 HOH HOH . G 5 HOH C 9 309 80 HOH HOH . G 5 HOH C 10 310 94 HOH HOH . G 5 HOH C 11 311 115 HOH HOH . G 5 HOH C 12 312 116 HOH HOH . G 5 HOH C 13 313 133 HOH HOH . G 5 HOH C 14 314 135 HOH HOH . G 5 HOH C 15 315 146 HOH HOH . G 5 HOH C 16 316 153 HOH HOH . G 5 HOH C 17 317 154 HOH HOH . G 5 HOH C 18 318 161 HOH HOH . G 5 HOH C 19 319 162 HOH HOH . G 5 HOH C 20 320 178 HOH HOH . G 5 HOH C 21 321 179 HOH HOH . G 5 HOH C 22 322 182 HOH HOH . G 5 HOH C 23 323 183 HOH HOH . G 5 HOH C 24 324 184 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 106.354 _atom_site.Cartn_y -1.839 _atom_site.Cartn_z -197.548 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #