data_3BTY # _model_server_result.job_id sQClOmNK1_FCNf7Lok_Kiw _model_server_result.datetime_utc '2024-11-24 17:44:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":14}' # _entry.id 3BTY # _exptl.entry_id 3BTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.161 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description propane-1-thiol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BTY _cell.length_a 77.915 _cell.length_b 77.915 _cell.length_c 226.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DT 6 B DT 6 1_555 A P MA7 7 B MA7 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale2 A O3' MA7 7 B MA7 7 1_555 A P DA 8 B DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? covale ? covale3 A N4 DC 9 B DC 9 1_555 D CA XL3 . B XL3 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale4 D SG XL3 . B XL3 14 1_555 C SG CYS 114 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? hydrog WATSON-CRICK hydrog1 A N1 DG 3 B DG 3 1_555 B N3 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 3 B DG 3 1_555 B O2 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 3 B DG 3 1_555 B N4 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 4 B DT 4 1_555 B N1 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 4 B DT 4 1_555 B N6 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog6 A N6 DA 5 B DA 5 1_555 B O4 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 5 B DA 5 1_555 B N3 DT 10 C DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 5 B DA 5 1_555 B O4 DT 10 C DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog9 A N3 DT 6 B DT 6 1_555 B O4 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog10 A O2 DT 6 B DT 6 1_555 B N3 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 8 B DA 8 1_555 B N3 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 8 B DA 8 1_555 B O4 DT 7 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 9 B DC 9 1_555 B N1 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 9 B DC 9 1_555 B O6 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 9 B DC 9 1_555 B N2 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 10 B DT 10 1_555 B N1 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 10 B DT 10 1_555 B N6 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 11 B DG 11 1_555 B N3 DC 4 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 11 B DG 11 1_555 B O2 DC 4 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 11 B DG 11 1_555 B N4 DC 4 C DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 12 B DC 12 1_555 B N1 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 12 B DC 12 1_555 B O6 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 12 B DC 12 1_555 B N2 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 13 B DG 13 1_555 B N3 DC 2 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 13 B DG 13 1_555 B O2 DC 2 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 13 B DG 13 1_555 B N4 DC 2 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 S' _chem_comp.formula_weight 76.161 _chem_comp.id XL3 _chem_comp.mon_nstd_flag . _chem_comp.name propane-1-thiol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA CB XL3 sing 567 n n CA HA XL3 sing 568 n n CA HAA XL3 sing 569 n n CA HAB XL3 sing 570 n n CC CB XL3 sing 571 n n CB HB XL3 sing 572 n n CB HBA XL3 sing 573 n n SG CC XL3 sing 574 n n CC HC XL3 sing 575 n n CC HCA XL3 sing 576 n n SG HSG XL3 sing 577 n n # _atom_sites.entry_id 3BTY _atom_sites.fract_transf_matrix[1][1] 0.012834 _atom_sites.fract_transf_matrix[1][2] 0.00741 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 XL3 B 1 14 1 XL3 XL3 . E 5 HOH B 1 46 46 HOH HOH . E 5 HOH B 2 47 47 HOH HOH . E 5 HOH B 3 66 66 HOH HOH . E 5 HOH B 4 69 69 HOH HOH . E 5 HOH B 5 74 74 HOH HOH . E 5 HOH B 6 102 102 HOH HOH . E 5 HOH B 7 103 103 HOH HOH . E 5 HOH B 8 108 108 HOH HOH . E 5 HOH B 9 109 109 HOH HOH . E 5 HOH B 10 119 119 HOH HOH . E 5 HOH B 11 122 122 HOH HOH . F 5 HOH C 1 18 18 HOH HOH . F 5 HOH C 2 48 48 HOH HOH . F 5 HOH C 3 49 49 HOH HOH . F 5 HOH C 4 50 50 HOH HOH . F 5 HOH C 5 53 53 HOH HOH . F 5 HOH C 6 71 71 HOH HOH . F 5 HOH C 7 72 72 HOH HOH . F 5 HOH C 8 80 80 HOH HOH . F 5 HOH C 9 83 83 HOH HOH . F 5 HOH C 10 105 105 HOH HOH . F 5 HOH C 11 118 118 HOH HOH . F 5 HOH C 12 121 121 HOH HOH . G 5 HOH A 1 259 1 HOH HOH . G 5 HOH A 2 260 2 HOH HOH . G 5 HOH A 3 261 3 HOH HOH . G 5 HOH A 4 262 4 HOH HOH . G 5 HOH A 5 263 5 HOH HOH . G 5 HOH A 6 264 6 HOH HOH . G 5 HOH A 7 265 7 HOH HOH . G 5 HOH A 8 266 8 HOH HOH . G 5 HOH A 9 267 9 HOH HOH . G 5 HOH A 10 268 10 HOH HOH . G 5 HOH A 11 269 11 HOH HOH . G 5 HOH A 12 270 12 HOH HOH . G 5 HOH A 13 271 13 HOH HOH . G 5 HOH A 14 272 14 HOH HOH . G 5 HOH A 15 273 15 HOH HOH . G 5 HOH A 16 274 16 HOH HOH . G 5 HOH A 17 275 17 HOH HOH . G 5 HOH A 18 276 19 HOH HOH . G 5 HOH A 19 277 20 HOH HOH . G 5 HOH A 20 278 21 HOH HOH . G 5 HOH A 21 279 22 HOH HOH . G 5 HOH A 22 280 23 HOH HOH . G 5 HOH A 23 281 24 HOH HOH . G 5 HOH A 24 282 25 HOH HOH . G 5 HOH A 25 283 26 HOH HOH . G 5 HOH A 26 284 27 HOH HOH . G 5 HOH A 27 285 28 HOH HOH . G 5 HOH A 28 286 29 HOH HOH . G 5 HOH A 29 287 30 HOH HOH . G 5 HOH A 30 288 31 HOH HOH . G 5 HOH A 31 289 32 HOH HOH . G 5 HOH A 32 290 33 HOH HOH . G 5 HOH A 33 291 34 HOH HOH . G 5 HOH A 34 292 35 HOH HOH . G 5 HOH A 35 293 36 HOH HOH . G 5 HOH A 36 294 37 HOH HOH . G 5 HOH A 37 295 38 HOH HOH . G 5 HOH A 38 296 39 HOH HOH . G 5 HOH A 39 297 40 HOH HOH . G 5 HOH A 40 298 41 HOH HOH . G 5 HOH A 41 299 42 HOH HOH . G 5 HOH A 42 300 43 HOH HOH . G 5 HOH A 43 301 44 HOH HOH . G 5 HOH A 44 302 45 HOH HOH . G 5 HOH A 45 303 51 HOH HOH . G 5 HOH A 46 304 52 HOH HOH . G 5 HOH A 47 305 54 HOH HOH . G 5 HOH A 48 306 55 HOH HOH . G 5 HOH A 49 307 56 HOH HOH . G 5 HOH A 50 308 57 HOH HOH . G 5 HOH A 51 309 58 HOH HOH . G 5 HOH A 52 310 59 HOH HOH . G 5 HOH A 53 311 60 HOH HOH . G 5 HOH A 54 312 61 HOH HOH . G 5 HOH A 55 313 62 HOH HOH . G 5 HOH A 56 314 63 HOH HOH . G 5 HOH A 57 315 64 HOH HOH . G 5 HOH A 58 316 65 HOH HOH . G 5 HOH A 59 317 67 HOH HOH . G 5 HOH A 60 318 68 HOH HOH . G 5 HOH A 61 319 70 HOH HOH . G 5 HOH A 62 320 73 HOH HOH . G 5 HOH A 63 321 75 HOH HOH . G 5 HOH A 64 322 76 HOH HOH . G 5 HOH A 65 323 77 HOH HOH . G 5 HOH A 66 324 78 HOH HOH . G 5 HOH A 67 325 79 HOH HOH . G 5 HOH A 68 326 81 HOH HOH . G 5 HOH A 69 327 82 HOH HOH . G 5 HOH A 70 328 84 HOH HOH . G 5 HOH A 71 329 85 HOH HOH . G 5 HOH A 72 330 86 HOH HOH . G 5 HOH A 73 331 87 HOH HOH . G 5 HOH A 74 332 88 HOH HOH . G 5 HOH A 75 333 89 HOH HOH . G 5 HOH A 76 334 90 HOH HOH . G 5 HOH A 77 335 91 HOH HOH . G 5 HOH A 78 336 92 HOH HOH . G 5 HOH A 79 337 93 HOH HOH . G 5 HOH A 80 338 94 HOH HOH . G 5 HOH A 81 339 95 HOH HOH . G 5 HOH A 82 340 96 HOH HOH . G 5 HOH A 83 341 97 HOH HOH . G 5 HOH A 84 342 98 HOH HOH . G 5 HOH A 85 343 99 HOH HOH . G 5 HOH A 86 344 100 HOH HOH . G 5 HOH A 87 345 101 HOH HOH . G 5 HOH A 88 346 104 HOH HOH . G 5 HOH A 89 347 106 HOH HOH . G 5 HOH A 90 348 107 HOH HOH . G 5 HOH A 91 349 110 HOH HOH . G 5 HOH A 92 350 111 HOH HOH . G 5 HOH A 93 351 112 HOH HOH . G 5 HOH A 94 352 113 HOH HOH . G 5 HOH A 95 353 114 HOH HOH . G 5 HOH A 96 354 115 HOH HOH . G 5 HOH A 97 355 116 HOH HOH . G 5 HOH A 98 356 117 HOH HOH . G 5 HOH A 99 357 120 HOH HOH . G 5 HOH A 100 358 123 HOH HOH . G 5 HOH A 101 359 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA XL3 . . . D 4 6.729 -14.562 -1.139 1 50.39 ? CA XL3 14 B 1 HETATM 2 C CB XL3 . . . D 4 7.566 -15.794 -0.816 1 50.22 ? CB XL3 14 B 1 HETATM 3 C CC XL3 . . . D 4 8.836 -15.847 -1.654 1 50.23 ? CC XL3 14 B 1 HETATM 4 S SG XL3 . . . D 4 8.999 -17.43 -2.553 1 49.24 ? SG XL3 14 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #