data_3BUZ # _model_server_result.job_id YhmCOfOU38yreLnblAY7ew _model_server_result.datetime_utc '2024-11-13 06:43:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3buz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":380}' # _entry.id 3BUZ # _exptl.entry_id 3BUZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BUZ _cell.length_a 57.014 _cell.length_b 126.344 _cell.length_c 147.127 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BUZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O1G ATP . B ATP 380 1_555 D CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc2 E O3G ATP . B ATP 380 1_555 D CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 E O2B ATP . B ATP 380 1_555 D CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 D CA CA . B CA 500 1_555 H O HOH . B HOH 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 D CA CA . B CA 500 1_555 H O HOH . B HOH 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 D CA CA . B CA 500 1_555 H O HOH . B HOH 931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc7 D CA CA . B CA 500 1_555 H O HOH . B HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3BUZ _atom_sites.fract_transf_matrix[1][1] 0.01754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TAD A 1 500 500 TAD TAD . D 4 CA B 1 500 500 CA CA . E 5 ATP B 1 380 380 ATP ATP . F 6 LAR B 1 901 901 LAR LAR . G 7 HOH A 1 501 2 HOH HOH . G 7 HOH A 2 502 3 HOH HOH . G 7 HOH A 3 503 4 HOH HOH . G 7 HOH A 4 504 5 HOH HOH . G 7 HOH A 5 505 9 HOH HOH . G 7 HOH A 6 506 11 HOH HOH . G 7 HOH A 7 507 13 HOH HOH . G 7 HOH A 8 508 14 HOH HOH . G 7 HOH A 9 509 15 HOH HOH . G 7 HOH A 10 510 16 HOH HOH . G 7 HOH A 11 511 18 HOH HOH . G 7 HOH A 12 512 19 HOH HOH . G 7 HOH A 13 513 20 HOH HOH . G 7 HOH A 14 514 22 HOH HOH . G 7 HOH A 15 515 23 HOH HOH . G 7 HOH A 16 516 24 HOH HOH . G 7 HOH A 17 517 27 HOH HOH . G 7 HOH A 18 518 28 HOH HOH . G 7 HOH A 19 519 29 HOH HOH . G 7 HOH A 20 520 31 HOH HOH . G 7 HOH A 21 521 32 HOH HOH . G 7 HOH A 22 522 34 HOH HOH . G 7 HOH A 23 523 35 HOH HOH . G 7 HOH A 24 524 42 HOH HOH . G 7 HOH A 25 525 43 HOH HOH . G 7 HOH A 26 526 45 HOH HOH . G 7 HOH A 27 527 46 HOH HOH . G 7 HOH A 28 528 48 HOH HOH . G 7 HOH A 29 529 52 HOH HOH . G 7 HOH A 30 530 53 HOH HOH . G 7 HOH A 31 531 54 HOH HOH . G 7 HOH A 32 532 55 HOH HOH . G 7 HOH A 33 533 56 HOH HOH . G 7 HOH A 34 534 57 HOH HOH . G 7 HOH A 35 535 58 HOH HOH . G 7 HOH A 36 536 59 HOH HOH . G 7 HOH A 37 537 60 HOH HOH . G 7 HOH A 38 538 61 HOH HOH . G 7 HOH A 39 539 62 HOH HOH . G 7 HOH A 40 540 63 HOH HOH . G 7 HOH A 41 541 77 HOH HOH . H 7 HOH B 1 902 1 HOH HOH . H 7 HOH B 2 903 6 HOH HOH . H 7 HOH B 3 904 7 HOH HOH . H 7 HOH B 4 905 8 HOH HOH . H 7 HOH B 5 906 10 HOH HOH . H 7 HOH B 6 907 12 HOH HOH . H 7 HOH B 7 908 17 HOH HOH . H 7 HOH B 8 909 21 HOH HOH . H 7 HOH B 9 910 25 HOH HOH . H 7 HOH B 10 911 26 HOH HOH . H 7 HOH B 11 912 30 HOH HOH . H 7 HOH B 12 913 33 HOH HOH . H 7 HOH B 13 914 36 HOH HOH . H 7 HOH B 14 915 37 HOH HOH . H 7 HOH B 15 916 38 HOH HOH . H 7 HOH B 16 917 39 HOH HOH . H 7 HOH B 17 918 40 HOH HOH . H 7 HOH B 18 919 41 HOH HOH . H 7 HOH B 19 920 44 HOH HOH . H 7 HOH B 20 921 47 HOH HOH . H 7 HOH B 21 922 49 HOH HOH . H 7 HOH B 22 923 50 HOH HOH . H 7 HOH B 23 924 51 HOH HOH . H 7 HOH B 24 925 64 HOH HOH . H 7 HOH B 25 926 65 HOH HOH . H 7 HOH B 26 927 66 HOH HOH . H 7 HOH B 27 928 67 HOH HOH . H 7 HOH B 28 929 68 HOH HOH . H 7 HOH B 29 930 69 HOH HOH . H 7 HOH B 30 931 70 HOH HOH . H 7 HOH B 31 932 71 HOH HOH . H 7 HOH B 32 933 72 HOH HOH . H 7 HOH B 33 934 73 HOH HOH . H 7 HOH B 34 935 74 HOH HOH . H 7 HOH B 35 936 75 HOH HOH . H 7 HOH B 36 937 76 HOH HOH . H 7 HOH B 37 938 78 HOH HOH . H 7 HOH B 38 939 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 5 27.265 31.614 -26.216 1 30.57 ? PG ATP 380 B 1 HETATM 2 O O1G ATP . . . E 5 27.476 32.618 -25.103 1 33.31 ? O1G ATP 380 B 1 HETATM 3 O O2G ATP . . . E 5 27.138 32.164 -27.607 1 28.67 ? O2G ATP 380 B 1 HETATM 4 O O3G ATP . . . E 5 28.174 30.427 -26.146 1 30.77 ? O3G ATP 380 B 1 HETATM 5 P PB ATP . . . E 5 25.772 29.587 -25.194 1 32.26 ? PB ATP 380 B 1 HETATM 6 O O1B ATP . . . E 5 24.359 29.363 -24.772 1 33.79 ? O1B ATP 380 B 1 HETATM 7 O O2B ATP . . . E 5 26.909 29.308 -24.248 1 29.77 ? O2B ATP 380 B 1 HETATM 8 O O3B ATP . . . E 5 25.827 31.051 -25.811 1 29.14 ? O3B ATP 380 B 1 HETATM 9 P PA ATP . . . E 5 26.106 27.025 -26.161 1 33.24 ? PA ATP 380 B 1 HETATM 10 O O1A ATP . . . E 5 27.584 26.669 -26.166 1 29.34 ? O1A ATP 380 B 1 HETATM 11 O O2A ATP . . . E 5 25.282 26.799 -24.921 1 30.45 ? O2A ATP 380 B 1 HETATM 12 O O3A ATP . . . E 5 25.994 28.606 -26.439 1 32.39 ? O3A ATP 380 B 1 HETATM 13 O O5' ATP . . . E 5 25.327 26.319 -27.398 1 30.16 ? O5' ATP 380 B 1 HETATM 14 C C5' ATP . . . E 5 24.009 26.739 -27.713 1 28.62 ? C5' ATP 380 B 1 HETATM 15 C C4' ATP . . . E 5 23.832 26.715 -29.217 1 30.33 ? C4' ATP 380 B 1 HETATM 16 O O4' ATP . . . E 5 24.249 25.429 -29.723 1 33.45 ? O4' ATP 380 B 1 HETATM 17 C C3' ATP . . . E 5 22.364 26.846 -29.631 1 29.25 ? C3' ATP 380 B 1 HETATM 18 O O3' ATP . . . E 5 22.296 27.796 -30.672 1 25.41 ? O3' ATP 380 B 1 HETATM 19 C C2' ATP . . . E 5 22.021 25.449 -30.126 1 30.62 ? C2' ATP 380 B 1 HETATM 20 O O2' ATP . . . E 5 21.003 25.302 -31.097 1 29.64 ? O2' ATP 380 B 1 HETATM 21 C C1' ATP . . . E 5 23.331 24.976 -30.723 1 29.75 ? C1' ATP 380 B 1 HETATM 22 N N9 ATP . . . E 5 23.338 23.514 -30.801 1 28.88 ? N9 ATP 380 B 1 HETATM 23 C C8 ATP . . . E 5 23.071 22.643 -29.814 1 28.76 ? C8 ATP 380 B 1 HETATM 24 N N7 ATP . . . E 5 23.188 21.369 -30.305 1 28.47 ? N7 ATP 380 B 1 HETATM 25 C C5 ATP . . . E 5 23.56 21.434 -31.598 1 26.88 ? C5 ATP 380 B 1 HETATM 26 C C6 ATP . . . E 5 23.876 20.513 -32.703 1 28.18 ? C6 ATP 380 B 1 HETATM 27 N N6 ATP . . . E 5 23.857 19.165 -32.636 1 26.66 ? N6 ATP 380 B 1 HETATM 28 N N1 ATP . . . E 5 24.204 21.086 -33.878 1 30.58 ? N1 ATP 380 B 1 HETATM 29 C C2 ATP . . . E 5 24.266 22.417 -34.073 1 29.33 ? C2 ATP 380 B 1 HETATM 30 N N3 ATP . . . E 5 23.979 23.291 -33.111 1 30.4 ? N3 ATP 380 B 1 HETATM 31 C C4 ATP . . . E 5 23.632 22.867 -31.896 1 27.82 ? C4 ATP 380 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #