data_3BUZ # _model_server_result.job_id r-Y5ICsTmjh5FnVUuTsCSw _model_server_result.datetime_utc '2024-11-28 22:45:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3buz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 3BUZ # _exptl.entry_id 3BUZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.55 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LATRUNCULIN A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BUZ _cell.length_a 57.014 _cell.length_b 126.344 _cell.length_c 147.127 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BUZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O1G ATP . B ATP 380 1_555 D CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc2 E O3G ATP . B ATP 380 1_555 D CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 E O2B ATP . B ATP 380 1_555 D CA CA . B CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 D CA CA . B CA 500 1_555 H O HOH . B HOH 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 D CA CA . B CA 500 1_555 H O HOH . B HOH 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 D CA CA . B CA 500 1_555 H O HOH . B HOH 931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc7 D CA CA . B CA 500 1_555 H O HOH . B HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C22 H31 N O5 S' _chem_comp.formula_weight 421.55 _chem_comp.id LAR _chem_comp.mon_nstd_flag . _chem_comp.name 'LATRUNCULIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C19 LAR sing 222 n n S1 C20 LAR sing 223 n n N1 C18 LAR sing 224 n n N1 C20 LAR sing 225 n n N1 HN1 LAR sing 226 n n O1 C1 LAR doub 227 n n O2 C1 LAR sing 228 n n O2 C15 LAR sing 229 n n O3 C13 LAR sing 230 n n O3 C17 LAR sing 231 n n O4 C17 LAR sing 232 n n O4 HO4 LAR sing 233 n n O5 C20 LAR doub 234 n n C1 C2 LAR sing 235 n n C2 C3 LAR doub 236 z n C2 H21 LAR sing 237 n n C3 C4 LAR sing 238 n n C3 C21 LAR sing 239 n n C4 C5 LAR sing 240 n n C4 H41 LAR sing 241 n n C4 H42 LAR sing 242 n n C5 C6 LAR sing 243 n n C5 H51 LAR sing 244 n n C5 H52 LAR sing 245 n n C6 C7 LAR doub 246 e n C6 H61 LAR sing 247 n n C7 C8 LAR sing 248 n n C7 H71 LAR sing 249 n n C8 C9 LAR doub 250 z n C8 H81 LAR sing 251 n n C9 C10 LAR sing 252 n n C9 H91 LAR sing 253 n n C10 C11 LAR sing 254 n n C10 C22 LAR sing 255 n n C10 H101 LAR sing 256 n n C11 C12 LAR sing 257 n n C11 H111 LAR sing 258 n n C11 H112 LAR sing 259 n n C12 C13 LAR sing 260 n n C12 H121 LAR sing 261 n n C12 H122 LAR sing 262 n n C13 C14 LAR sing 263 n n C13 H131 LAR sing 264 n n C14 C15 LAR sing 265 n n C14 H141 LAR sing 266 n n C14 H142 LAR sing 267 n n C15 C16 LAR sing 268 n n C15 H151 LAR sing 269 n n C16 C17 LAR sing 270 n n C16 H161 LAR sing 271 n n C16 H162 LAR sing 272 n n C17 C18 LAR sing 273 n n C18 C19 LAR sing 274 n n C18 H181 LAR sing 275 n n C19 H191 LAR sing 276 n n C19 H192 LAR sing 277 n n C21 H211 LAR sing 278 n n C21 H212 LAR sing 279 n n C21 H213 LAR sing 280 n n C22 H221 LAR sing 281 n n C22 H222 LAR sing 282 n n C22 H223 LAR sing 283 n n # _atom_sites.entry_id 3BUZ _atom_sites.fract_transf_matrix[1][1] 0.01754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TAD A 1 500 500 TAD TAD . D 4 CA B 1 500 500 CA CA . E 5 ATP B 1 380 380 ATP ATP . F 6 LAR B 1 901 901 LAR LAR . G 7 HOH A 1 501 2 HOH HOH . G 7 HOH A 2 502 3 HOH HOH . G 7 HOH A 3 503 4 HOH HOH . G 7 HOH A 4 504 5 HOH HOH . G 7 HOH A 5 505 9 HOH HOH . G 7 HOH A 6 506 11 HOH HOH . G 7 HOH A 7 507 13 HOH HOH . G 7 HOH A 8 508 14 HOH HOH . G 7 HOH A 9 509 15 HOH HOH . G 7 HOH A 10 510 16 HOH HOH . G 7 HOH A 11 511 18 HOH HOH . G 7 HOH A 12 512 19 HOH HOH . G 7 HOH A 13 513 20 HOH HOH . G 7 HOH A 14 514 22 HOH HOH . G 7 HOH A 15 515 23 HOH HOH . G 7 HOH A 16 516 24 HOH HOH . G 7 HOH A 17 517 27 HOH HOH . G 7 HOH A 18 518 28 HOH HOH . G 7 HOH A 19 519 29 HOH HOH . G 7 HOH A 20 520 31 HOH HOH . G 7 HOH A 21 521 32 HOH HOH . G 7 HOH A 22 522 34 HOH HOH . G 7 HOH A 23 523 35 HOH HOH . G 7 HOH A 24 524 42 HOH HOH . G 7 HOH A 25 525 43 HOH HOH . G 7 HOH A 26 526 45 HOH HOH . G 7 HOH A 27 527 46 HOH HOH . G 7 HOH A 28 528 48 HOH HOH . G 7 HOH A 29 529 52 HOH HOH . G 7 HOH A 30 530 53 HOH HOH . G 7 HOH A 31 531 54 HOH HOH . G 7 HOH A 32 532 55 HOH HOH . G 7 HOH A 33 533 56 HOH HOH . G 7 HOH A 34 534 57 HOH HOH . G 7 HOH A 35 535 58 HOH HOH . G 7 HOH A 36 536 59 HOH HOH . G 7 HOH A 37 537 60 HOH HOH . G 7 HOH A 38 538 61 HOH HOH . G 7 HOH A 39 539 62 HOH HOH . G 7 HOH A 40 540 63 HOH HOH . G 7 HOH A 41 541 77 HOH HOH . H 7 HOH B 1 902 1 HOH HOH . H 7 HOH B 2 903 6 HOH HOH . H 7 HOH B 3 904 7 HOH HOH . H 7 HOH B 4 905 8 HOH HOH . H 7 HOH B 5 906 10 HOH HOH . H 7 HOH B 6 907 12 HOH HOH . H 7 HOH B 7 908 17 HOH HOH . H 7 HOH B 8 909 21 HOH HOH . H 7 HOH B 9 910 25 HOH HOH . H 7 HOH B 10 911 26 HOH HOH . H 7 HOH B 11 912 30 HOH HOH . H 7 HOH B 12 913 33 HOH HOH . H 7 HOH B 13 914 36 HOH HOH . H 7 HOH B 14 915 37 HOH HOH . H 7 HOH B 15 916 38 HOH HOH . H 7 HOH B 16 917 39 HOH HOH . H 7 HOH B 17 918 40 HOH HOH . H 7 HOH B 18 919 41 HOH HOH . H 7 HOH B 19 920 44 HOH HOH . H 7 HOH B 20 921 47 HOH HOH . H 7 HOH B 21 922 49 HOH HOH . H 7 HOH B 22 923 50 HOH HOH . H 7 HOH B 23 924 51 HOH HOH . H 7 HOH B 24 925 64 HOH HOH . H 7 HOH B 25 926 65 HOH HOH . H 7 HOH B 26 927 66 HOH HOH . H 7 HOH B 27 928 67 HOH HOH . H 7 HOH B 28 929 68 HOH HOH . H 7 HOH B 29 930 69 HOH HOH . H 7 HOH B 30 931 70 HOH HOH . H 7 HOH B 31 932 71 HOH HOH . H 7 HOH B 32 933 72 HOH HOH . H 7 HOH B 33 934 73 HOH HOH . H 7 HOH B 34 935 74 HOH HOH . H 7 HOH B 35 936 75 HOH HOH . H 7 HOH B 36 937 76 HOH HOH . H 7 HOH B 37 938 78 HOH HOH . H 7 HOH B 38 939 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 LAR . . . F 6 17.144 30.906 -31 1 106.86 ? S1 LAR 901 B 1 HETATM 2 N N1 LAR . . . F 6 18.701 29.282 -30.045 1 106.63 ? N1 LAR 901 B 1 HETATM 3 O O1 LAR . . . F 6 16.81 23.489 -26.87 1 109.11 ? O1 LAR 901 B 1 HETATM 4 O O2 LAR . . . F 6 18.048 25.389 -26.445 1 108.18 ? O2 LAR 901 B 1 HETATM 5 O O3 LAR . . . F 6 16.991 29.365 -26.723 1 108.28 ? O3 LAR 901 B 1 HETATM 6 O O4 LAR . . . F 6 16.177 28.653 -28.787 1 108.76 ? O4 LAR 901 B 1 HETATM 7 O O5 LAR . . . F 6 18.27 29.028 -32.269 1 102.94 ? O5 LAR 901 B 1 HETATM 8 C C1 LAR . . . F 6 17.214 24.241 -25.995 1 109.7 ? C1 LAR 901 B 1 HETATM 9 C C2 LAR . . . F 6 16.938 23.856 -24.571 1 111.19 ? C2 LAR 901 B 1 HETATM 10 C C3 LAR . . . F 6 15.935 23.036 -24.103 1 113.06 ? C3 LAR 901 B 1 HETATM 11 C C4 LAR . . . F 6 14.889 22.387 -25.035 1 113.21 ? C4 LAR 901 B 1 HETATM 12 C C5 LAR . . . F 6 13.397 22.495 -24.641 1 112.42 ? C5 LAR 901 B 1 HETATM 13 C C6 LAR . . . F 6 12.716 23.692 -25.288 1 111.39 ? C6 LAR 901 B 1 HETATM 14 C C7 LAR . . . F 6 13.12 24.91 -24.906 1 110.28 ? C7 LAR 901 B 1 HETATM 15 C C8 LAR . . . F 6 12.598 26.188 -25.396 1 108.93 ? C8 LAR 901 B 1 HETATM 16 C C9 LAR . . . F 6 12.923 27.28 -24.695 1 108.02 ? C9 LAR 901 B 1 HETATM 17 C C10 LAR . . . F 6 12.486 28.693 -25.047 1 107.75 ? C10 LAR 901 B 1 HETATM 18 C C11 LAR . . . F 6 13.514 29.427 -25.912 1 107.47 ? C11 LAR 901 B 1 HETATM 19 C C12 LAR . . . F 6 14.945 29.353 -25.362 1 108.48 ? C12 LAR 901 B 1 HETATM 20 C C13 LAR . . . F 6 15.856 28.582 -26.331 1 108.58 ? C13 LAR 901 B 1 HETATM 21 C C14 LAR . . . F 6 16.298 27.17 -25.876 1 107.86 ? C14 LAR 901 B 1 HETATM 22 C C15 LAR . . . F 6 17.71 26.807 -26.371 1 107.3 ? C15 LAR 901 B 1 HETATM 23 C C16 LAR . . . F 6 18.049 27.494 -27.714 1 107.95 ? C16 LAR 901 B 1 HETATM 24 C C17 LAR . . . F 6 17.363 28.852 -27.995 1 108.19 ? C17 LAR 901 B 1 HETATM 25 C C18 LAR . . . F 6 18.193 29.877 -28.791 1 107.44 ? C18 LAR 901 B 1 HETATM 26 C C19 LAR . . . F 6 17.331 31.066 -29.25 1 106.62 ? C19 LAR 901 B 1 HETATM 27 C C20 LAR . . . F 6 18.125 29.6 -31.2 1 105.62 ? C20 LAR 901 B 1 HETATM 28 C C21 LAR . . . F 6 15.888 22.75 -22.611 1 112.44 ? C21 LAR 901 B 1 HETATM 29 C C22 LAR . . . F 6 12.257 29.484 -23.762 1 107.96 ? C22 LAR 901 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #