data_3BV8 # _model_server_result.job_id j7ZbbNHEFyWRsNf5p2clnQ _model_server_result.datetime_utc '2025-03-22 09:49:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 3BV8 # _exptl.entry_id 3BV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BV8 _cell.length_a 76.503 _cell.length_b 76.503 _cell.length_c 93.862 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 76.503 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 38.2515 66.253541 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 38.2515 66.253541 46.931 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 76.503 0 46.931 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 46.931 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 74 A GLU 75 1_555 A N MSE 75 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 75 A MSE 76 1_555 A N ASP 76 A ASP 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A O PHE 19 A PHE 20 1_555 B NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 A OD1 ASN 79 A ASN 80 1_555 B NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 B NA NA . A NA 101 1_555 D O HOH . A HOH 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 B NA NA . A NA 101 1_555 D O HOH . A HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 B NA NA . A NA 101 1_555 D O HOH . A HOH 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BV8 _atom_sites.fract_transf_matrix[1][1] 0.013071 _atom_sites.fract_transf_matrix[1][2] 0.007547 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 101 101 NA NA . C 3 GOL A 1 102 102 GOL GOL . D 4 HOH A 1 103 1 HOH HOH . D 4 HOH A 2 104 2 HOH HOH . D 4 HOH A 3 105 3 HOH HOH . D 4 HOH A 4 106 4 HOH HOH . D 4 HOH A 5 107 5 HOH HOH . D 4 HOH A 6 108 6 HOH HOH . D 4 HOH A 7 109 7 HOH HOH . D 4 HOH A 8 110 8 HOH HOH . D 4 HOH A 9 111 9 HOH HOH . D 4 HOH A 10 112 10 HOH HOH . D 4 HOH A 11 113 11 HOH HOH . D 4 HOH A 12 114 12 HOH HOH . D 4 HOH A 13 115 13 HOH HOH . D 4 HOH A 14 116 14 HOH HOH . D 4 HOH A 15 117 15 HOH HOH . D 4 HOH A 16 118 16 HOH HOH . D 4 HOH A 17 119 17 HOH HOH . D 4 HOH A 18 120 18 HOH HOH . D 4 HOH A 19 121 19 HOH HOH . D 4 HOH A 20 122 20 HOH HOH . D 4 HOH A 21 123 21 HOH HOH . D 4 HOH A 22 124 22 HOH HOH . D 4 HOH A 23 125 23 HOH HOH . D 4 HOH A 24 126 24 HOH HOH . D 4 HOH A 25 127 25 HOH HOH . D 4 HOH A 26 128 26 HOH HOH . D 4 HOH A 27 129 27 HOH HOH . D 4 HOH A 28 130 28 HOH HOH . D 4 HOH A 29 131 29 HOH HOH . D 4 HOH A 30 132 30 HOH HOH . D 4 HOH A 31 133 31 HOH HOH . D 4 HOH A 32 134 32 HOH HOH . D 4 HOH A 33 135 33 HOH HOH . D 4 HOH A 34 136 34 HOH HOH . D 4 HOH A 35 137 35 HOH HOH . D 4 HOH A 36 138 36 HOH HOH . D 4 HOH A 37 139 37 HOH HOH . D 4 HOH A 38 140 38 HOH HOH . D 4 HOH A 39 141 39 HOH HOH . D 4 HOH A 40 142 40 HOH HOH . D 4 HOH A 41 143 41 HOH HOH . D 4 HOH A 42 144 42 HOH HOH . D 4 HOH A 43 145 43 HOH HOH . D 4 HOH A 44 146 44 HOH HOH . D 4 HOH A 45 147 45 HOH HOH . D 4 HOH A 46 148 46 HOH HOH . D 4 HOH A 47 149 47 HOH HOH . D 4 HOH A 48 150 48 HOH HOH . D 4 HOH A 49 151 49 HOH HOH . D 4 HOH A 50 152 50 HOH HOH . D 4 HOH A 51 153 51 HOH HOH . D 4 HOH A 52 154 52 HOH HOH . D 4 HOH A 53 155 53 HOH HOH . D 4 HOH A 54 156 54 HOH HOH . D 4 HOH A 55 157 55 HOH HOH . D 4 HOH A 56 158 56 HOH HOH . D 4 HOH A 57 159 57 HOH HOH . D 4 HOH A 58 160 58 HOH HOH . D 4 HOH A 59 161 59 HOH HOH . D 4 HOH A 60 162 60 HOH HOH . D 4 HOH A 61 163 61 HOH HOH . D 4 HOH A 62 164 62 HOH HOH . D 4 HOH A 63 165 63 HOH HOH . D 4 HOH A 64 166 64 HOH HOH . D 4 HOH A 65 167 65 HOH HOH . D 4 HOH A 66 168 66 HOH HOH . D 4 HOH A 67 169 67 HOH HOH . D 4 HOH A 68 170 68 HOH HOH . D 4 HOH A 69 171 69 HOH HOH . D 4 HOH A 70 172 70 HOH HOH . D 4 HOH A 71 173 71 HOH HOH . D 4 HOH A 72 174 72 HOH HOH . D 4 HOH A 73 175 73 HOH HOH . D 4 HOH A 74 176 74 HOH HOH . D 4 HOH A 75 177 75 HOH HOH . D 4 HOH A 76 178 76 HOH HOH . D 4 HOH A 77 179 77 HOH HOH . D 4 HOH A 78 180 78 HOH HOH . D 4 HOH A 79 181 79 HOH HOH . D 4 HOH A 80 182 80 HOH HOH . D 4 HOH A 81 183 81 HOH HOH . D 4 HOH A 82 184 82 HOH HOH . D 4 HOH A 83 185 83 HOH HOH . D 4 HOH A 84 186 84 HOH HOH . D 4 HOH A 85 187 85 HOH HOH . D 4 HOH A 86 188 86 HOH HOH . D 4 HOH A 87 189 87 HOH HOH . D 4 HOH A 88 190 88 HOH HOH . D 4 HOH A 89 191 89 HOH HOH . D 4 HOH A 90 192 90 HOH HOH . D 4 HOH A 91 193 91 HOH HOH . D 4 HOH A 92 194 92 HOH HOH . D 4 HOH A 93 195 93 HOH HOH . D 4 HOH A 94 196 94 HOH HOH . D 4 HOH A 95 197 95 HOH HOH . D 4 HOH A 96 198 96 HOH HOH . D 4 HOH A 97 199 97 HOH HOH . D 4 HOH A 98 200 98 HOH HOH . D 4 HOH A 99 201 99 HOH HOH . D 4 HOH A 100 202 100 HOH HOH . D 4 HOH A 101 203 101 HOH HOH . D 4 HOH A 102 204 102 HOH HOH . D 4 HOH A 103 205 103 HOH HOH . D 4 HOH A 104 206 104 HOH HOH . D 4 HOH A 105 207 105 HOH HOH . D 4 HOH A 106 208 106 HOH HOH . D 4 HOH A 107 209 107 HOH HOH . D 4 HOH A 108 210 108 HOH HOH . D 4 HOH A 109 211 109 HOH HOH . D 4 HOH A 110 212 110 HOH HOH . D 4 HOH A 111 213 111 HOH HOH . D 4 HOH A 112 214 112 HOH HOH . D 4 HOH A 113 215 113 HOH HOH . D 4 HOH A 114 216 114 HOH HOH . D 4 HOH A 115 217 115 HOH HOH . D 4 HOH A 116 218 116 HOH HOH . D 4 HOH A 117 219 117 HOH HOH . D 4 HOH A 118 220 118 HOH HOH . D 4 HOH A 119 221 119 HOH HOH . D 4 HOH A 120 222 120 HOH HOH . D 4 HOH A 121 223 121 HOH HOH . D 4 HOH A 122 224 122 HOH HOH . D 4 HOH A 123 225 123 HOH HOH . D 4 HOH A 124 226 124 HOH HOH . D 4 HOH A 125 227 125 HOH HOH . D 4 HOH A 126 228 126 HOH HOH . D 4 HOH A 127 229 127 HOH HOH . D 4 HOH A 128 230 128 HOH HOH . D 4 HOH A 129 231 129 HOH HOH . D 4 HOH A 130 232 130 HOH HOH . D 4 HOH A 131 233 131 HOH HOH . D 4 HOH A 132 234 132 HOH HOH . D 4 HOH A 133 235 133 HOH HOH . D 4 HOH A 134 236 134 HOH HOH . D 4 HOH A 135 237 135 HOH HOH . D 4 HOH A 136 238 136 HOH HOH . D 4 HOH A 137 239 137 HOH HOH . D 4 HOH A 138 240 138 HOH HOH . D 4 HOH A 139 241 139 HOH HOH . D 4 HOH A 140 242 140 HOH HOH . D 4 HOH A 141 243 141 HOH HOH . D 4 HOH A 142 244 142 HOH HOH . D 4 HOH A 143 245 143 HOH HOH . D 4 HOH A 144 246 144 HOH HOH . D 4 HOH A 145 247 145 HOH HOH . D 4 HOH A 146 248 146 HOH HOH . D 4 HOH A 147 249 147 HOH HOH . D 4 HOH A 148 250 148 HOH HOH . D 4 HOH A 149 251 149 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 49.481 _atom_site.Cartn_y 30.633 _atom_site.Cartn_z 25.135 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 20.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #